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View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | BHI | Basal Medium | CD196,BHI | CD196,Basal Medium | CD196,Log,BHI | ClnR mutant | LB-CD16 | Log,BHI | LuxS KO | ND-CD12 | ND-CD13 | ND-CD17 | R20291 | R20291,BHI | R20291,Basal Medium | R20291,Heme+ | R20291,Log | R20291,Log,BHI | Strain 630 | Strain 630,BHI | Strain 630,Basal Medium | Strain 630,Faecal water+ | Strain 630,HPUra+ | Strain 630,Lag | Strain 630,Log | Strain 630,Log,BHI | Strain 630,Sporulating | TW11 | UK1 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CCL17149 (BN171_1330010) | - | - | - | - | - | 1.49 | - | - | - | - | - | - | - | - | - | - | - | - | 0.17 | 2.79 | 0.73 | 0.68 | 0.34 | 0.94 | 1.91 | 1.65 | -0.38 | 2.02 | - |
CCL17150 (BN171_1330011) | -1.9 | 0.29 | -1.27 | -1.34 | -1.42 | 1.36 | -0.51 | -0.94 | -0.93 | -1.87 | -2.4 | -0.62 | -0.88 | -2.2 | -0.68 | 0.2 | -0.28 | -1.58 | -0.03 | 1.16 | 0.55 | -0.58 | 0.08 | 0.93 | 1.29 | -0.09 | 0.4 | 1.95 | -1.62 |
CCL17342 (fbp) | -0.15 | 0.15 | -0.64 | -0.15 | -1.41 | 0.07 | 0.02 | -1.68 | 0.13 | -0.89 | -0.53 | -1.27 | -0.44 | -0.77 | 0.74 | -0.26 | -0.87 | -1.37 | 0.22 | 1.0 | 1.93 | -0.24 | 0.12 | 0.86 | 0.76 | -0.1 | -0.62 | -1.03 | -0.48 |
CCL17431 (BN171_1500007) | - | - | - | - | - | -1.96 | - | - | - | - | - | - | -11.93 | - | - | - | -7.25 | - | 0.9 | -0.02 | 0.28 | -0.35 | 0.88 | 2.73 | 2.84 | -2.39 | -0.83 | 2.91 | - |
CCL17661 (BN171_1660002) | - | - | - | - | -10.68 | 1.05 | - | - | - | - | - | - | - | - | - | - | - | - | 1.36 | 0.34 | 0.95 | 0.05 | 1.83 | 2.66 | 2.02 | -0.35 | 1.11 | 1.7 | - |
CCL17881 (BN171_1920008) | -2.18 | 0.2 | -2.23 | -0.74 | -0.87 | -0.03 | 0.45 | -0.44 | -2.13 | 0.14 | -0.29 | -0.29 | -0.85 | -2.22 | 0.41 | -0.34 | -1.07 | -0.27 | 0.13 | 0.79 | 0.81 | -0.78 | -1.08 | 1.6 | 1.47 | 0.97 | -0.31 | -0.16 | -0.12 |
CCL17959 (BN171_1970028) | - | - | - | - | - | 2.25 | - | - | - | - | - | - | - | - | - | - | - | - | 1.06 | 0.17 | -1.52 | 0.06 | 1.61 | 1.92 | 2.2 | -0.16 | -0.7 | 2.75 | - |
CCL17960 (BN171_1970029) | - | - | - | - | - | 1.68 | - | - | - | - | - | - | - | - | - | - | - | - | 0.95 | 2.01 | 0.16 | -0.36 | 0.91 | 2.05 | 2.25 | 1.82 | -0.51 | 1.55 | - |
CCL17962 (BN171_1970031) | - | - | - | - | - | 1.95 | - | - | - | - | - | - | - | - | - | - | - | - | 0.72 | 1.46 | -0.72 | -1.22 | 0.92 | 1.91 | 1.88 | 1.5 | -0.35 | 2.76 | - |
CCL17963 (BN171_1980001) | - | - | - | - | - | -1.99 | - | - | - | - | - | - | - | - | - | - | - | - | 0.23 | 1.67 | 2.0 | - | 0.64 | 3.26 | 2.64 | -1.32 | 1.4 | - | - |
CCL18049 (BN171_2070001) | -2.25 | -1.81 | -2.47 | -1.47 | -2.83 | -0.72 | -1.51 | -2.6 | -1.82 | -1.43 | -2.05 | -2.35 | -2.04 | -2.49 | -1.57 | -2.04 | -2.37 | -2.33 | 0.76 | 1.53 | 2.46 | -0.06 | -0.39 | 1.62 | 0.58 | -0.38 | 2.43 | 0.52 | -2.05 |
CCL18145 (BN171_2130002) | -2.78 | -5.46 | -2.22 | -3.38 | -3.69 | 0.38 | -0.3 | -6.27 | -0.53 | -0.17 | -0.14 | 0.08 | 0.13 | -3.04 | -4.54 | -0.06 | 0.53 | -3.65 | 0.87 | -0.03 | 0.12 | -0.33 | 1.57 | 1.45 | 1.81 | -2.11 | 0.65 | 1.36 | -0.36 |
CCL18150 (BN171_2130007) | -0.21 | -1.51 | -1.21 | -0.65 | -2.42 | -0.06 | -0.2 | -1.86 | -0.8 | -0.12 | -0.36 | 0.62 | 0.18 | -1.56 | -2.08 | 0.96 | -0.92 | -2.01 | -0.09 | 0.62 | 1.02 | -0.07 | -0.04 | 0.36 | 0.52 | -0.21 | 0.45 | 1.97 | -0.16 |
CCL18152 (BN171_2130009) | -2.57 | -5.16 | -2.91 | -5.15 | -2.64 | 1.99 | -1.13 | -3.83 | - | -1.43 | -0.54 | -1.12 | -0.21 | -1.46 | -5.98 | -4.0 | -0.13 | -2.27 | 0.51 | 1.9 | -0.12 | -1.07 | 1.13 | 1.26 | 1.65 | 0.78 | -0.73 | 1.49 | -0.69 |
CCL18224 (BN171_2170011) | -1.11 | -0.21 | -1.16 | -0.59 | -1.23 | 0.24 | 0.44 | -1.74 | -0.77 | 0.85 | 0.57 | 0.56 | -0.19 | -2.69 | -1.64 | -0.14 | -0.45 | -2.21 | 0.65 | -0.1 | 0.86 | -0.63 | 0.8 | 1.49 | 0.79 | -0.81 | 0.19 | -0.02 | -0.33 |
CCL18333 (BN171_2220020) | - | - | - | - | - | -1.67 | - | - | - | - | - | - | - | - | - | - | - | - | 0.97 | 0.5 | 0.77 | 3.26 | 0.74 | 2.46 | 1.42 | -0.39 | 1.77 | - | - |
CCL18334 (BN171_2220021) | - | - | - | - | - | -0.41 | - | - | - | - | - | - | - | - | - | - | - | - | -0.38 | 1.68 | 2.67 | 3.39 | -1.77 | 0.79 | 0.88 | 1.28 | 0.2 | - | - |
CCL18335 (effD) | - | - | - | - | - | -2.89 | - | - | - | - | - | - | - | - | - | - | - | - | -0.3 | 1.25 | 1.94 | 4.14 | -1.63 | -1.92 | -0.41 | 1.25 | -1.17 | - | - |
CCL18336 (effR) | - | - | - | - | -9.24 | -2.25 | - | - | - | - | - | - | - | - | - | - | - | - | -0.55 | 2.23 | 1.68 | 3.74 | -0.46 | -0.19 | -0.41 | 1.47 | 0.76 | - | - |
CCL18337 (BN171_2220024) | - | - | - | - | -10.64 | -5.22 | - | - | - | - | - | - | - | - | - | - | - | - | -0.68 | 1.0 | 1.1 | 4.46 | -3.46 | -2.2 | -2.64 | 0.75 | -3.44 | - | - |
CCL18339 (BN171_2220026) | - | - | - | - | -9.05 | -4.89 | - | - | - | - | - | - | - | - | - | - | - | - | -1.0 | 1.93 | 1.57 | 4.19 | -4.06 | -2.86 | -3.19 | 1.59 | -4.16 | - | - |
CCL18340 (BN171_2220027) | - | - | - | - | -8.97 | -4.59 | - | - | - | - | - | - | - | - | - | - | - | - | -0.83 | 1.05 | 0.78 | 4.48 | -3.58 | -2.07 | -2.44 | 0.69 | -3.31 | - | - |
CCL18375 (BN171_2250001) | - | - | - | - | - | -0.53 | - | - | - | - | - | - | - | - | - | - | - | - | 0.97 | 1.22 | -0.59 | 1.47 | 1.42 | 2.54 | 3.3 | 0.21 | 0.07 | - | - |
CCL18613 (BN171_2470007) | - | - | - | - | - | -1.26 | - | - | - | - | - | - | - | - | - | - | - | - | 1.17 | 1.65 | 2.85 | 1.09 | 1.12 | 0.11 | 1.4 | 1.54 | 0.29 | 1.94 | - |
CCL18616 (BN171_2470010) | - | - | - | - | - | 0.47 | - | - | - | - | - | - | - | - | - | - | - | - | 0.96 | 0.99 | 0.18 | 2.59 | 1.63 | 1.76 | 1.71 | 0.45 | 1.68 | 1.15 | - |
CCL18617 (BN171_2470011) | - | - | - | - | - | -0.43 | - | - | - | - | - | - | - | - | - | - | - | - | 0.76 | 0.7 | 0.53 | 2.4 | 1.21 | 2.52 | 1.6 | 0.2 | 2.04 | 0.91 | - |
CCL18623 (BN171_2470017) | - | - | - | - | - | 0.48 | - | - | - | - | - | - | - | - | - | - | - | - | 1.01 | 2.56 | 2.42 | 0.95 | 1.02 | 1.71 | 1.29 | 1.77 | 0.33 | - | - |
CCL18691 (BN171_2500001) | - | - | - | - | -4.73 | -0.44 | - | - | - | - | - | - | - | - | - | - | - | - | 1.06 | 2.33 | 1.95 | 0.06 | 0.53 | 0.97 | 1.55 | 2.57 | -0.46 | 1.69 | - |
CCL18692 (BN171_2500002) | - | - | - | - | - | 1.91 | - | - | - | - | - | - | - | - | - | - | - | - | 0.54 | 2.59 | 1.4 | - | 0.37 | 1.98 | 2.21 | 1.43 | 0.41 | 0.32 | - |
CCL18766 (BN171_2610006) | -2.02 | -2.94 | - | -2.06 | - | -1.9 | - | -1.67 | - | - | - | - | -0.51 | - | -1.76 | - | 0.18 | - | - | -2.91 | -1.58 | - | - | 2.42 | 3.3 | - | 1.15 | 2.96 | - |
CCL18870 (cbiM) | -3.86 | -5.03 | -2.23 | -5.21 | -1.38 | -0.87 | 0.13 | -3.04 | 0.89 | 0.44 | 0.18 | 0.24 | 0.21 | -4.61 | -5.21 | 0.1 | -0.83 | -3.07 | 1.62 | -2.32 | -4.74 | 1.51 | 1.6 | 1.99 | 0.76 | -2.16 | 0.3 | 0.16 | -0.76 |
CCL18871 (cbiN) | -4.85 | -5.52 | -3.28 | -6.39 | -2.8 | -1.39 | -2.52 | -3.75 | 0.81 | -1.67 | -1.92 | -2.21 | 0.01 | -5.86 | -5.93 | -0.51 | -0.65 | -4.28 | 1.71 | -2.36 | -4.87 | 2.6 | 1.5 | 2.21 | 1.13 | -2.04 | 1.08 | 0.61 | -5.27 |
CCL18951 (BN171_2770002) | - | - | - | - | -11.26 | 0.32 | - | - | - | - | - | - | - | - | - | - | - | - | 0.63 | 2.0 | 1.21 | 0.6 | 1.59 | 1.65 | 2.18 | 1.78 | -0.01 | 1.69 | - |
CCL18995 (BN171_280010) | -1.83 | -0.8 | -1.8 | -0.44 | -1.78 | -1.1 | -0.13 | -2.15 | 1.09 | 0.28 | 0.41 | 0.12 | 0.2 | -2.52 | -0.45 | 0.2 | -0.01 | -1.51 | 1.88 | -1.12 | 0.54 | -1.93 | 0.75 | 1.26 | 0.32 | -1.8 | 0.33 | -0.36 | 0.48 |
CCL18996 (BN171_280011) | -1.65 | -0.5 | -1.48 | -0.21 | -1.56 | -0.94 | -1.03 | -1.93 | 1.71 | -0.62 | 0.01 | -0.39 | -0.21 | -1.71 | -0.3 | -0.11 | -0.15 | -1.32 | 1.8 | -0.52 | 0.88 | -3.18 | 0.59 | 1.4 | 0.45 | -1.93 | 0.38 | -0.13 | 0.17 |
CCL19131 (BN171_2870061) | -3.02 | -5.76 | -2.95 | -4.07 | -2.31 | 1.71 | -4.27 | -4.55 | -6.22 | -3.05 | -2.31 | -2.36 | -1.99 | -2.07 | -3.55 | -1.83 | -1.29 | -2.34 | 0.74 | 1.53 | -0.55 | -1.37 | 1.05 | 0.42 | 2.81 | 1.77 | -2.22 | 1.72 | -2.82 |
CCL19145 (BN171_290001) | - | - | - | - | -10.31 | -0.01 | - | - | - | - | - | - | - | - | - | - | - | - | 1.74 | 0.52 | 0.72 | 2.96 | 1.42 | 2.45 | 1.48 | 0.15 | -0.02 | -0.37 | - |
CCL19195 (BN171_2940003) | -0.85 | -0.5 | -1.21 | -0.1 | -1.45 | -1.4 | 0.25 | -0.98 | -0.98 | 0.5 | 0.08 | 0.55 | 0.11 | -0.87 | -0.57 | 0.65 | -0.53 | -0.72 | -0.41 | -1.56 | -0.65 | -0.37 | 0.28 | 1.08 | 1.34 | -2.31 | 0.79 | 1.73 | -0.55 |
CCL19325 (BN171_3040001) | -1.2 | -2.54 | -0.69 | -0.81 | -1.19 | -0.3 | 0.22 | -2.73 | 0.21 | -0.1 | -0.16 | -0.76 | 0.25 | -1.22 | -1.55 | 0.64 | -0.67 | -1.54 | 0.37 | 0.25 | -0.4 | -0.8 | 1.22 | 0.88 | 0.68 | -0.5 | 1.16 | 1.8 | -0.84 |
CCL19634 (BN171_3340001) | - | - | - | - | - | 2.7 | - | - | - | - | - | - | 0.5 | - | - | - | 0.0 | - | -0.61 | - | - | - | - | 1.74 | 2.85 | - | 0.48 | 2.91 | - |
CCL19753 (BN171_3450007) | 0.24 | -1.92 | 0.34 | -0.19 | -0.28 | -1.33 | -2.63 | -0.9 | 2.05 | -2.31 | -2.66 | -2.01 | -0.48 | 0.54 | -1.24 | -0.25 | -0.13 | -0.95 | 1.65 | 0.68 | 1.14 | - | 1.65 | -0.24 | -0.38 | 0.01 | -3.27 | -0.53 | -1.33 |
CCL19813 (BN171_3500004) | -7.62 | -7.4 | -6.85 | -6.2 | -6.71 | -2.78 | -1.47 | -8.28 | -9.1 | -1.65 | -2.17 | -2.36 | 0.1 | -7.53 | -6.3 | -6.34 | -8.85 | -7.1 | 2.7 | -2.9 | -1.77 | 2.1 | 2.01 | 2.39 | 0.97 | -3.07 | 1.96 | -4.5 | -3.71 |
CCL19832 (BN171_3520018) | -1.2 | -2.25 | 1.04 | 0.96 | 0.94 | 0.64 | -2.34 | -2.29 | 1.22 | -2.83 | -2.63 | -3.0 | -1.06 | -1.95 | -2.23 | -0.65 | -1.98 | -1.66 | 1.45 | 1.29 | 1.06 | -0.52 | 0.46 | 1.14 | 0.94 | 0.78 | -3.22 | -2.36 | -4.18 |
CCL19833 (BN171_3520019) | -2.82 | -6.42 | 0.79 | 0.44 | 0.43 | 1.14 | 0.36 | -4.35 | 1.98 | -0.51 | -0.2 | -1.01 | 0.28 | -1.99 | -3.71 | 0.2 | -1.8 | -3.4 | 1.74 | -0.14 | -0.08 | - | 0.99 | -0.54 | 0.1 | -1.69 | -2.88 | 0.98 | -1.12 |
CCL19898 (BN171_3590019) | -1.41 | -1.51 | -1.22 | -0.35 | -0.53 | 0.29 | -1.45 | -1.64 | -3.02 | -0.02 | -0.79 | -0.65 | -0.68 | -2.48 | -1.03 | -0.18 | -1.0 | -0.81 | 0.75 | 0.96 | 0.09 | 1.56 | 0.31 | 1.69 | 1.24 | 0.68 | 0.9 | -0.85 | -1.31 |
CCL19899 (BN171_3590020) | -1.43 | -2.37 | -1.32 | -0.65 | -0.65 | 0.95 | -1.02 | -2.07 | -2.73 | -0.03 | -0.49 | -0.74 | -0.6 | -1.87 | -1.62 | 0.37 | -1.33 | -1.07 | 0.88 | 0.72 | -0.39 | 0.24 | 0.28 | 1.98 | 1.65 | 0.23 | 1.09 | -0.75 | -0.75 |
CCL20167 (rpmH) | - | - | - | - | - | 3.61 | - | - | - | - | - | - | -1.15 | - | - | - | -0.01 | - | 0.3 | - | - | - | - | -1.11 | -0.06 | - | -2.19 | 3.64 | - |
CCL20406 (BN171_4320002) | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | -2.44 | 2.87 | 2.27 | 3.67 | - | - | - | 1.97 | - | - | - |
CCL20485 (BN171_550007) | - | - | - | - | - | 0.29 | - | - | - | - | - | - | - | - | - | - | - | - | -3.01 | 0.02 | - | - | - | 2.69 | 2.01 | - | 2.89 | 3.12 | - |
CCL20489 (BN171_570002) | - | - | - | - | - | 0.5 | - | - | - | - | - | - | - | - | - | - | - | - | 0.8 | 2.99 | 2.06 | -0.43 | 1.38 | 0.97 | 1.93 | 2.06 | -1.02 | - | - |
CCL20539 (BN171_600004) | -0.71 | -1.62 | -0.98 | -1.12 | -0.99 | -0.42 | -0.67 | -1.32 | 0.91 | 0.44 | -0.03 | 0.19 | 0.24 | -1.1 | -0.71 | 0.32 | 0.68 | -0.52 | 0.92 | -1.07 | -0.37 | 1.4 | 0.84 | 0.86 | 0.59 | -1.72 | -0.25 | -0.44 | -0.17 |
CCL20554 (BN171_670002) | - | - | - | -0.87 | - | -1.13 | - | - | - | - | - | - | - | - | - | - | -1.21 | - | - | - | -0.82 | - | - | 3.22 | 3.54 | 0.27 | 1.79 | 0.43 | - |
CCL20649 (cdd) | 0.25 | -2.4 | -0.22 | -1.74 | -1.37 | -1.42 | -0.31 | -0.89 | 1.2 | -1.23 | -1.14 | -0.25 | 0.09 | -0.6 | -2.56 | 0.72 | -1.43 | -1.33 | 1.0 | -1.63 | -0.34 | 0.71 | 1.42 | 1.63 | 0.7 | -1.54 | 1.18 | -0.03 | -1.77 |
CCL20682 (rpmI) | -1.59 | -2.44 | -1.41 | -1.36 | -0.15 | 0.8 | -0.42 | 0.37 | -3.31 | -0.5 | -0.12 | 0.04 | -0.95 | -0.54 | -1.43 | -6.15 | -0.5 | 0.11 | 0.14 | 0.76 | -0.35 | -1.18 | 0.58 | 0.34 | 1.05 | 1.74 | -1.35 | 1.59 | 0.4 |
CCL20690 (BN171_930001) | 0.03 | -0.19 | -0.15 | -0.27 | -0.53 | 0.01 | -0.04 | -0.92 | -0.22 | -0.36 | -1.0 | -0.49 | 0.0 | -0.17 | -0.71 | -0.06 | -1.18 | -0.57 | 0.41 | 0.86 | 0.42 | -2.15 | 0.46 | 0.78 | 0.4 | -0.03 | 1.01 | 1.15 | -1.32 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.