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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | strain_5001420,control,fromUrine | strain_5001420,fromUrine | ch1034,13h_old_biofilm,biofilm_dispersed | ch1034,13h_old_biofilm,sessile | ch1034,7h_old_biofilm,sessile | ch1034,Log,planktonic | ch1034,Stationary,planktonic | control,fromNasalSwab,fromSwine | dmc1097 | dmc1097,control,fromBlood | dmc1097,fromBlood | ekp16,fromSputum | eugenol,fromNasalSwab,fromSwine | fromBlood | fromHospitalPatients | fromRectalSwab | fromUrine | je01 | k26,mero_susceptible,fromHospitalPatients | k56,mero_resistant,fromHospitalPatients | kctc2242 | kp4,FeLimited,fromRespiratoryTract | kpr1,+CTX | kpr1,+gent | kpr1,+mero | kpr1,+TMP/SMX | kpr1,control | kpr2,+CTX | kpr2,+gent | kpr2,+mero | kpr2,+TMP/SMX | kpr2,control | kps1,+CTX | kps1,+gent | kps1,+mero | kps1,+TMP/SMX | kps1,control | kps2,+CTX | kps2,+gent | kps2,+mero | kps2,+TMP/SMX | kps2,control | mrsn 1319 | ms6671 | njst258-1,FeLimited,fromUrine | njst258-1,fromUrine | rb011,+mero,mero_resistant | rb011,control,mero_resistant | rb012,+gent,gent_resistant | rb012,control,gent_resistant | rb013,+cip,cip_resistant | rb013,control,cip_resistant | rb039,+cip,cip_resistant | rb039,+mero,mero_susceptible | rb039,control,cip_resistant | rb039,control,mero_susceptible | rb040,+cip,cip_susceptible | rb040,+gent,gent_susceptible | rb040,control,cip_susceptible | rb040,control,gent_susceptible | rb041,+cip,cip_susceptible | rb041,control,cip_susceptible | rb121,+gent,gent_susceptible | rb121,+mero,mero_susceptible | rb121,control,gent_susceptible | rb121,control,mero_susceptible | rb122,+gent,gent_resistant | rb122,control,gent_resistant | rb257,+mero,mero_resistant | rb257,control,mero_resistant | uhkpc05,FeLimited,fromBlood | uhkpc05,fromBlood | uhkpc07 | uhkpc07,control,fromUrine | uhkpc07,fromUrine | uhkpc18 | uhkpc18,control,fromUrine | uhkpc18,fromUrine | uhkpc33 | uhkpc33,control,fromUrine | uhkpc33,fromUrine | uhkpc48 | uhkpc48,FeLimited,fromUrine | uhkpc67 | uhkpc67,control,fromBlood | uhkpc67,fromBlood | vakpc297 | vakpc297,FeLimited,fromUrine |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AGT22789 (N559_1003) | -2.09 | -2.49 | 0.76 | 1.11 | -0.31 | -1.13 | 0.72 | -0.15 | -2.21 | -3.07 | -2.3 | 1.46 | 0.14 | -0.44 | 1.61 | -0.6 | 0.09 | -5.06 | 0.82 | 0.17 | 2.3 | -0.89 | 0.01 | 0.23 | -0.48 | 0.37 | 0.11 | -0.43 | -0.68 | -0.7 | -1.35 | -0.41 | -0.11 | 0.68 | 0.83 | -1.74 | -0.04 | -0.22 | 1.64 | -0.85 | -0.8 | 0.22 | -0.03 | 1.62 | -3.18 | -0.71 | -0.43 | -0.79 | -0.68 | 0.01 | -0.8 | -0.54 | 0.41 | 0.85 | 0.52 | -0.27 | 1.08 | 2.03 | 0.42 | 1.11 | -0.52 | -0.99 | 0.68 | 0.34 | 0.63 | -0.18 | 0.23 | 0.64 | -1.02 | -0.18 | -2.04 | -1.17 | -0.24 | -2.06 | -2.16 | -0.16 | -3.32 | -1.94 | -1.02 | -2.69 | -3.04 | -0.12 | -2.31 | -1.95 | -3.36 | -1.51 | -0.64 | -2.48 |
AGT22792 (N559_1006) | -0.18 | -0.88 | 0.1 | 0.52 | -0.58 | -0.97 | -0.01 | 1.02 | -2.6 | 0.02 | -0.4 | 0.37 | 0.81 | -0.73 | 1.44 | 0.15 | 0.06 | -3.09 | 0.75 | -0.08 | 1.52 | -1.68 | 0.37 | 0.01 | 0.19 | -0.48 | 0.2 | 0.3 | -0.24 | -0.2 | 0.28 | -0.14 | -0.13 | -0.07 | 0.48 | -1.68 | -0.2 | -0.2 | 0.79 | -0.38 | -0.27 | -0.05 | 0.06 | 0.3 | -0.33 | -0.91 | -0.04 | 0.21 | -0.24 | 0.33 | -1.0 | -0.57 | 0.63 | 0.61 | 0.33 | 0.17 | 0.84 | 1.46 | -0.55 | 0.54 | -0.78 | -0.24 | -0.07 | 0.84 | -0.27 | -0.02 | 0.01 | -0.16 | -0.52 | 0.36 | -0.88 | -0.74 | -1.01 | -0.19 | -0.58 | - | -0.07 | -0.46 | - | -0.14 | -0.02 | 0.48 | -1.03 | 0.65 | -0.21 | -0.24 | -1.45 | -2.28 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.