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View as: (view raw or row-normalized)
View using InCHLib : here ( Experimental feature, still under development)
(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)
| Gene | strain_5001420,control,fromUrine | strain_5001420,fromUrine | ch1034,13h_old_biofilm,biofilm_dispersed | ch1034,13h_old_biofilm,sessile | ch1034,7h_old_biofilm,sessile | ch1034,Log,planktonic | ch1034,Stationary,planktonic | control,fromNasalSwab,fromSwine | dmc1097 | dmc1097,control,fromBlood | dmc1097,fromBlood | ekp16,fromSputum | eugenol,fromNasalSwab,fromSwine | fromBlood | fromHospitalPatients | fromRectalSwab | fromUrine | je01 | k26,mero_susceptible,fromHospitalPatients | k56,mero_resistant,fromHospitalPatients | kctc2242 | kp4,FeLimited,fromRespiratoryTract | kpr1,+CTX | kpr1,+gent | kpr1,+mero | kpr1,+TMP/SMX | kpr1,control | kpr2,+CTX | kpr2,+gent | kpr2,+mero | kpr2,+TMP/SMX | kpr2,control | kps1,+CTX | kps1,+gent | kps1,+mero | kps1,+TMP/SMX | kps1,control | kps2,+CTX | kps2,+gent | kps2,+mero | kps2,+TMP/SMX | kps2,control | mrsn 1319 | ms6671 | njst258-1,FeLimited,fromUrine | njst258-1,fromUrine | rb011,+mero,mero_resistant | rb011,control,mero_resistant | rb012,+gent,gent_resistant | rb012,control,gent_resistant | rb013,+cip,cip_resistant | rb013,control,cip_resistant | rb039,+cip,cip_resistant | rb039,+mero,mero_susceptible | rb039,control,cip_resistant | rb039,control,mero_susceptible | rb040,+cip,cip_susceptible | rb040,+gent,gent_susceptible | rb040,control,cip_susceptible | rb040,control,gent_susceptible | rb041,+cip,cip_susceptible | rb041,control,cip_susceptible | rb121,+gent,gent_susceptible | rb121,+mero,mero_susceptible | rb121,control,gent_susceptible | rb121,control,mero_susceptible | rb122,+gent,gent_resistant | rb122,control,gent_resistant | rb257,+mero,mero_resistant | rb257,control,mero_resistant | uhkpc05,FeLimited,fromBlood | uhkpc05,fromBlood | uhkpc07 | uhkpc07,control,fromUrine | uhkpc07,fromUrine | uhkpc18 | uhkpc18,control,fromUrine | uhkpc18,fromUrine | uhkpc33 | uhkpc33,control,fromUrine | uhkpc33,fromUrine | uhkpc48 | uhkpc48,FeLimited,fromUrine | uhkpc67 | uhkpc67,control,fromBlood | uhkpc67,fromBlood | vakpc297 | vakpc297,FeLimited,fromUrine |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AGT24553 (N559_2884) | -1.64 | -1.31 | -2.13 | -1.54 | -1.36 | -3.11 | -2.21 | -0.09 | -2.91 | -1.62 | -1.29 | -1.28 | -0.42 | -2.81 | 0.77 | -2.53 | -2.72 | - | -0.37 | 1.14 | 1.02 | -4.15 | -1.08 | -0.67 | -0.09 | 0.35 | -0.34 | -0.01 | 0.62 | 0.91 | -0.2 | 0.19 | -1.19 | 1.7 | -0.66 | 1.98 | 0.24 | -0.97 | 2.16 | 0.54 | 1.17 | 0.35 | -1.92 | -1.42 | -3.33 | -2.99 | -0.25 | -0.31 | 0.62 | 0.58 | 0.94 | 0.97 | 0.24 | -1.17 | 0.21 | -1.26 | 1.48 | 2.41 | 1.11 | 0.21 | 1.63 | 1.75 | 1.7 | -0.07 | 0.39 | -0.06 | -0.67 | -0.78 | 0.6 | 0.56 | -3.1 | -2.62 | -3.64 | -1.56 | -1.16 | -3.89 | -1.26 | -0.83 | -2.62 | -1.49 | -0.96 | -4.52 | -3.53 | -1.75 | -1.59 | -1.21 | -3.05 | -3.14 |
AGT24554 (N559_2885) | -1.07 | -1.05 | -1.86 | -1.29 | -0.94 | -2.86 | -0.38 | 0.09 | -3.19 | -0.84 | -0.86 | -1.57 | 0.44 | -2.0 | 0.71 | -0.87 | -2.13 | -7.09 | 0.44 | 2.52 | 1.32 | -4.94 | -1.3 | -0.9 | 1.05 | 0.2 | 0.01 | -0.07 | 0.18 | 0.73 | -1.17 | 0.0 | -1.63 | 0.44 | -0.56 | 2.0 | -0.19 | -0.76 | 0.29 | 0.31 | 2.27 | 0.05 | -0.25 | -0.55 | -3.6 | -3.48 | 0.84 | 0.76 | 0.18 | 0.11 | 0.76 | 0.77 | 0.58 | -0.84 | 0.43 | -1.13 | 0.81 | 0.54 | 0.96 | 0.02 | 2.04 | 1.73 | 0.44 | -0.26 | -0.19 | -0.23 | -0.9 | -1.04 | 0.59 | 0.59 | -3.66 | -2.41 | -2.26 | -1.07 | -1.02 | -2.71 | -0.82 | -0.64 | -2.25 | -1.02 | -0.58 | -2.87 | -3.2 | -2.3 | -1.06 | -0.93 | -2.07 | -3.2 |
Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.