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Heatmap: Cluster_10 (HCCA)

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(Showing raw values)

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Gene
BHI
Basal Medium
CD196,BHI
CD196,Basal Medium
CD196,Log,BHI
ClnR mutant
LB-CD16
Log,BHI
LuxS KO
ND-CD12
ND-CD13
ND-CD17
R20291
R20291,BHI
R20291,Basal Medium
R20291,Heme+
R20291,Log
R20291,Log,BHI
Strain 630
Strain 630,BHI
Strain 630,Basal Medium
Strain 630,Faecal water+
Strain 630,HPUra+
Strain 630,Lag
Strain 630,Log
Strain 630,Log,BHI
Strain 630,Sporulating
TW11
UK1
CCL16967 (BN171_1030017)
 0.1 0.81 0.22 1.16 0.1 0.14 0.09 0.17 0.46 0.26 0.51 0.0 2.04 0.11 0.97 2.07 0.64 0.17 0.68 0.11 0.75 0.55 0.12 0.09 0.12 0.0 0.52 0.0 1.17
CCL16968 (BN171_1030018)
 0.62 1.01 0.32 0.8 0.36 0.23 1.04 0.33 0.55 0.3 0.45 0.6 2.22 0.23 0.84 2.03 0.98 0.35 0.94 0.23 0.78 1.26 1.21 0.53 0.55 0.18 1.32 0.0 0.48
CCL16969 (BN171_1030019)
 1.29 1.83 1.15 2.51 2.18 1.13 1.16 1.39 1.09 1.53 1.79 1.81 3.73 0.99 2.18 4.09 2.37 1.95 2.04 1.42 1.62 3.84 4.03 1.28 1.32 1.08 2.89 0.0 1.65
CCL17119 (BN171_1280003)
 0.04 0.04 0.12 0.19 0.12 0.0 0.34 0.02 0.02 0.2 0.21 0.18 0.91 0.12 0.36 0.1 0.19 0.31 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.03 0.0
CCL17152 (BN171_1330013)
 43.11 97.14 91.81 234.28 86.2 17.45 7.07 34.74 44.16 5.95 4.71 6.69 173.03 31.51 66.65 103.77 19.79 34.17 14.68 25.0 75.73 45.25 26.35 7.37 17.27 19.51 9.03 72.01 2.29
CCL17153 (nagA)
 38.04 86.93 70.13 263.33 108.07 22.24 11.48 26.86 14.9 9.38 6.46 8.04 97.01 35.92 64.74 88.23 18.73 32.61 15.32 24.32 65.86 42.38 19.31 8.64 18.42 20.82 14.96 63.82 4.6
CCL17154 (nagB)
 22.79 40.88 53.08 165.22 48.75 39.95 24.38 14.02 13.38 17.42 14.48 15.62 138.54 23.21 29.88 201.03 23.43 18.97 22.58 22.45 65.89 39.16 30.7 32.78 59.24 17.42 39.29 101.93 9.3
CCL17163 (BN171_1330024)
 0.0 0.03 0.1 0.05 0.04 0.46 0.25 0.0 0.39 0.13 0.13 0.09 1.15 0.1 0.0 0.87 0.28 0.0 0.29 0.16 0.09 0.0 0.19 0.1 0.19 0.0 0.19 0.64 0.0
CCL17164 (BN171_1330025)
 0.44 0.25 0.14 0.46 0.08 0.35 0.28 0.09 0.37 0.14 0.24 0.39 1.69 0.44 0.13 1.83 0.32 0.25 0.55 0.49 0.45 0.6 0.99 0.5 0.51 0.04 0.78 1.35 0.43
CCL17267 (BN171_1420010)
 0.11 0.07 0.07 0.43 0.19 0.7 1.0 0.09 0.66 0.75 0.76 0.65 2.84 0.03 0.04 2.23 0.59 0.04 0.76 0.08 0.1 0.19 1.38 0.86 0.43 0.0 1.72 1.91 1.04
CCL17455 (BN171_1500031)
 4.05 0.78 6.12 8.89 10.57 11.44 76.69 0.57 9.81 144.18 127.63 137.04 81.45 11.93 2.52 38.08 24.88 5.43 33.35 4.27 2.91 5.14 104.38 20.81 20.29 1.83 3.35 141.87 90.31
CCL17589 (yycF)
 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.01 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
CCL17656 (BN171_1640046)
 22.8 21.14 22.15 19.93 12.01 5.95 536.89 32.2 20.57 781.13 772.72 981.23 97.88 2.3 11.07 19.65 177.84 14.23 186.83 3.62 4.44 3.78 565.01 329.43 43.88 2.62 29.92 806.52 871.57
CCL17795 (kdpA)
 0.64 0.33 0.83 2.8 1.13 0.6 0.79 0.23 0.25 0.31 0.44 0.19 21.66 0.39 0.79 5.98 0.49 0.5 2.55 0.73 1.43 1.87 1.69 0.93 1.19 0.48 1.02 4.26 0.21
CCL17796 (kdpB)
 1.93 0.94 2.01 4.57 2.25 1.41 1.07 0.85 0.55 0.86 0.78 0.84 25.73 1.52 1.12 7.95 1.21 1.46 2.58 2.42 1.69 3.49 1.95 1.7 1.24 1.61 1.58 4.46 0.5
CCL17797 (kdpC)
 6.72 1.57 5.38 6.22 3.19 5.09 3.52 3.17 1.86 0.31 2.61 2.04 38.65 5.74 1.46 10.2 2.74 3.72 3.92 6.11 2.99 2.45 4.58 4.4 3.0 4.1 3.54 7.31 1.68
CCL17831 (vanG)
 1.27 0.41 1.43 2.04 1.51 1.48 1.56 0.18 1.68 2.39 1.84 1.79 8.73 0.79 0.58 2.75 1.14 0.78 1.86 1.17 0.79 1.8 1.81 1.41 3.89 0.64 0.59 0.0 1.25
CCL17832 (vanY)
 2.16 1.49 1.99 3.74 1.7 1.62 3.46 0.65 1.63 5.2 3.07 3.61 9.55 1.06 0.96 3.76 1.56 1.34 2.44 1.88 1.34 1.73 2.74 1.69 3.88 1.65 0.4 0.0 1.85
CCL18028 (BN171_2030014)
 0.93 1.43 0.89 2.08 0.79 1.25 1.77 0.59 1.55 1.02 2.09 2.46 2.46 0.37 0.83 2.03 0.97 0.61 1.69 0.71 0.84 1.01 3.6 2.92 1.41 0.43 2.69 4.81 1.93
CCL18029 (BN171_2030015)
 1.45 3.13 2.07 3.8 2.58 3.0 11.1 1.55 3.82 7.65 4.05 5.2 7.65 2.86 3.18 5.6 4.2 2.17 4.03 2.73 2.87 2.08 5.73 9.87 3.84 1.09 9.13 9.24 3.82
CCL18305 (BN171_2210005)
 8.58 1.06 17.99 16.36 8.43 5.74 16.98 1.27 34.8 26.76 19.36 19.96 34.56 7.55 2.74 25.08 11.08 4.99 6.29 4.0 3.46 3.23 12.99 20.66 22.59 1.55 6.4 0.0 17.58
CCL18477 (trxB)
 229.13 301.21 314.14 299.17 219.29 55.74 688.99 203.9 147.86 549.02 674.23 826.37 256.84 59.11 229.83 85.9 295.66 184.7 281.27 77.8 65.23 95.08 840.86 431.17 47.87 35.06 151.52 638.22 858.93
CCL18554 (BN171_2420021)
 6.21 2.23 4.23 8.99 4.38 2.99 6.66 1.55 0.9 2.96 4.19 2.93 8.35 6.93 2.39 6.31 1.65 3.09 2.27 4.98 2.4 3.51 4.43 1.61 2.1 1.3 5.3 1.94 2.9
CCL18635 (BN171_2480010)
 3.98 6.99 20.4 50.22 15.47 2.87 1.62 1.82 5.22 1.73 3.62 3.57 16.73 6.83 11.04 4.39 1.56 5.23 3.53 4.32 6.86 8.05 2.74 1.5 2.24 2.11 1.58 8.45 2.54
CCL18636 (BN171_2480011)
 8.75 9.25 26.76 82.83 22.91 2.66 10.37 2.0 3.45 3.97 10.46 9.65 25.91 19.51 15.79 4.16 4.23 9.5 9.09 6.95 20.2 12.03 2.92 2.37 3.97 1.68 10.02 143.96 8.47
CCL18637 (BN171_2480012)
 10.44 26.67 33.5 151.48 43.84 1.54 11.95 4.19 1.51 5.41 8.42 6.04 45.93 24.01 45.14 2.93 4.04 23.02 20.01 7.98 27.88 21.75 1.49 3.44 7.62 3.0 27.95 178.02 4.95
CCL18638 (nanA)
 4.97 13.39 15.58 71.89 19.1 1.65 10.17 2.45 1.57 11.18 9.08 5.85 34.93 13.96 20.81 2.51 3.24 11.9 10.68 3.27 12.3 13.56 0.85 1.89 5.57 1.27 13.94 98.46 9.9
CCL18639 (nanE)
 11.29 26.24 39.67 126.14 39.7 2.91 4.22 6.28 2.44 4.36 3.62 1.85 33.41 31.52 48.06 4.21 3.16 26.82 11.14 5.61 20.12 18.57 0.95 1.43 3.77 2.78 4.86 44.08 3.9
CCL18674 (BN171_2480049)
 2.91 1.64 3.19 3.14 2.55 1.38 3.15 2.47 0.76 1.8 3.34 1.75 2.98 2.34 1.6 4.79 2.1 2.35 2.28 2.57 1.06 2.13 4.43 2.42 1.72 1.21 3.12 5.09 0.91
CCL18802 (BN171_2640001)
 9.72 7.87 12.49 13.11 16.78 10.94 2.69 8.24 3.68 7.69 7.76 9.17 23.08 9.75 6.76 8.68 8.7 9.59 7.82 9.56 4.58 38.3 4.88 15.53 14.32 8.82 1.5 15.99 3.65
CCL18906 (BN171_2720006)
 2.61 1.37 3.8 4.39 3.38 5.67 9.09 1.61 4.72 9.29 8.2 8.54 7.45 2.52 1.51 7.42 5.58 3.23 6.86 3.76 2.54 0.97 13.66 7.41 4.34 1.64 5.53 18.51 6.9
CCL18907 (BN171_2720007)
 1.81 1.89 2.32 2.84 1.81 3.76 2.36 1.64 2.45 3.46 2.26 3.31 4.41 1.85 1.34 4.34 2.62 2.49 3.59 2.45 1.64 1.87 5.29 1.16 1.59 1.71 2.7 10.41 2.37
CCL18908 (BN171_2720008)
 3.11 2.73 2.35 5.37 3.43 17.64 17.31 7.11 7.24 4.69 7.6 7.43 15.2 4.07 4.06 8.16 13.18 15.03 23.12 5.26 4.33 14.99 28.94 7.6 8.69 5.04 41.32 81.0 11.65
CCL18909 (BN171_2720009)
 7.09 11.68 8.73 15.27 9.2 40.5 35.76 17.99 10.95 6.73 11.66 16.56 16.98 12.75 11.73 8.47 20.1 36.12 34.92 13.28 8.81 19.26 35.09 12.29 11.41 18.2 37.86 55.79 23.25
CCL18910 (BN171_2720010)
 1.81 3.46 1.63 4.91 1.61 11.67 7.38 4.12 3.31 4.15 8.8 14.08 8.03 3.09 2.27 3.55 6.72 7.55 12.23 4.18 1.87 7.06 14.68 3.87 3.11 2.8 14.1 20.15 10.77
CCL18911 (BN171_2720011)
 0.85 0.99 1.25 2.3 1.15 5.35 12.24 0.75 3.68 7.66 8.26 11.67 6.9 2.23 1.16 1.26 3.18 2.35 7.84 3.22 1.22 0.96 12.24 6.53 2.32 1.13 10.72 18.65 9.94
CCL18912 (BN171_2720012)
 0.76 1.03 1.55 1.87 0.96 2.28 5.1 1.28 0.58 5.79 4.95 5.41 3.8 1.12 0.76 1.8 1.84 1.91 3.27 1.51 0.75 0.74 8.58 3.13 1.01 0.83 2.7 9.18 5.38
CCL19237 (BN171_300003)
 0.04 0.04 0.07 0.31 0.21 0.09 0.0 0.13 0.0 0.0 0.0 0.1 0.16 0.03 0.19 0.0 0.07 0.14 0.15 0.0 0.0 0.88 0.16 0.15 0.1 0.1 0.38 0.0 0.0
CCL19446 (BN171_3150009)
 69.44 110.24 69.62 95.65 59.64 11.26 102.33 71.81 20.1 114.46 175.69 208.48 69.89 17.05 71.62 25.53 34.51 64.17 73.01 25.88 26.4 4.88 126.31 130.15 22.48 16.38 36.49 158.4 215.43
CCL19468 (trxA)
 7.24 10.29 4.04 8.68 2.93 3.45 680.17 6.14 48.59 558.39 1215.84 1375.27 180.03 3.42 4.22 56.21 123.98 6.28 502.1 7.15 9.21 12.84 1438.05 110.92 26.73 2.75 54.89 904.31 1953.96
CCL19562 (bglG)
 0.81 0.21 3.1 1.81 3.37 7.1 9.52 0.86 2.09 16.79 14.31 15.7 30.07 22.16 1.72 14.34 2.63 15.56 20.07 12.28 1.71 7.21 6.94 5.79 10.83 4.34 1.54 8.51 13.78
CCL19605 (BN171_3290018)
 0.0 0.0 1.74 0.87 0.75 0.0 0.0 0.19 0.0 0.0 0.0 0.0 5.52 0.19 0.29 0.0 1.17 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
CCL19606 (BN171_3290019)
 1.08 1.7 1.92 4.09 1.32 0.0 2.14 1.21 0.16 2.27 1.1 0.91 2.38 0.76 1.4 0.35 0.73 0.97 0.02 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.84
CCL19607 (BN171_3290020)
 0.0 0.0 0.0 0.07 0.09 0.0 0.08 0.03 0.0 0.0 0.09 0.32 0.53 0.09 0.0 0.1 0.13 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
CCL19743 (phoU)
 7.75 1.87 11.32 3.4 3.33 2.69 7.39 2.85 2.4 1.92 3.59 5.05 19.19 34.41 1.98 5.31 3.85 2.41 24.32 36.02 2.26 5.88 29.78 4.32 1.68 3.09 4.59 14.88 2.93
CCL19744 (pstB)
 8.03 3.25 9.5 3.51 2.56 0.89 4.07 2.9 3.58 2.55 5.09 2.56 19.74 22.89 2.9 3.35 3.71 3.24 19.61 27.1 1.65 3.71 22.17 4.31 1.2 2.18 4.95 10.0 2.9
CCL19745 (pstA)
 4.8 0.9 8.21 2.26 1.45 0.43 1.98 1.06 2.55 3.18 1.3 0.87 13.55 18.06 0.89 3.33 1.83 1.44 9.55 20.75 1.62 2.9 11.22 2.64 1.36 1.19 4.4 10.19 1.8
CCL19834 (BN171_3530001)
 6.08 2.69 4.46 9.91 4.8 4.5 1.69 1.94 0.69 2.3 3.42 3.57 15.15 3.33 3.13 14.86 3.03 3.5 6.59 2.68 2.03 2.42 4.77 3.4 9.94 2.38 1.51 17.13 0.94
CCL19835 (BN171_3530002)
 8.13 4.8 6.49 16.02 8.85 2.8 2.45 1.95 1.33 2.43 2.14 1.18 13.42 2.43 4.83 13.05 2.66 4.52 7.21 2.06 2.27 3.76 4.1 4.71 12.66 2.26 0.37 17.72 4.04
CCL20199 (BN171_3780005)
 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.38 2.44 0.0
CCL20221 (BN171_3800001)
 0.0 0.0 2.45 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 27.13 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 17.53 0.73 0.0 3.06 5.66 0.0
CCL20222 (BN171_3800002)
 0.0 0.0 0.0 0.0 0.0 15.61 0.0 0.0 0.0 0.0 0.0 0.0 37.54 0.0 0.0 0.0 0.0 0.0 0.6 0.0 0.0 0.0 0.0 5.03 0.0 0.0 2.06 0.87 0.0
CCL20223 (BN171_3800003)
 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 14.17 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 9.03 0.0 0.0 0.64 3.6 0.0
CCL20224 (BN171_3800004)
 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 34.89 0.0 0.0 0.0 0.72 0.0 0.0 0.0 0.0 0.0 0.0 64.68 1.71 0.0 1.64 1.09 0.0
CCL20233 (BN171_3840001)
 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.62 0.0 0.0 0.0 0.37 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
CCL20237 (BN171_3860004)
 2.93 9.05 5.71 17.25 11.29 12.63 5.17 2.45 0.0 0.0 10.72 15.37 31.21 20.03 60.34 0.0 12.93 35.07 1.93 21.47 3.74 0.0 0.0 2.57 3.43 11.28 2.64 0.0 0.0
CCL20245 (BN171_3890001)
 0.07 0.15 0.0 0.1 0.0 0.0 0.0 0.13 0.0 0.0 0.0 0.0 0.49 0.0 0.47 0.79 0.01 0.17 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
CCL20271 (REP)
 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.16 0.0 0.0 0.0 0.01 0.0 0.03 0.03 0.0 0.0 0.02 0.0 0.0 0.0 0.0 0.0 0.0
CCL20318 (BN171_4140001)
 0.0 0.19 0.0 0.28 0.0 0.13 2.31 0.0 0.0 0.69 2.09 2.04 3.23 0.1 0.0 0.0 0.55 0.2 0.08 0.0 0.0 0.0 0.0 0.04 0.06 0.0 0.15 0.0 0.0
CCL20364 (BN171_4240003)
 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.72 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
CCL20423 (BN171_4410001)
 0.45 0.79 1.02 2.62 0.17 0.0 0.0 0.33 0.0 0.0 0.0 0.0 1.7 0.76 0.76 2.76 0.4 0.55 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
CCL20477 (BN171_540002)
 16.55 8.17 16.03 30.41 24.05 3.2 22.92 7.31 5.52 21.54 20.78 24.45 37.78 19.45 9.59 41.09 21.69 27.98 26.46 4.42 5.77 5.72 33.91 3.18 10.49 7.62 2.35 65.92 17.44
CCL20478 (BN171_540003)
 4.27 1.02 13.31 16.88 10.53 1.78 16.48 1.13 6.32 22.52 13.16 17.03 34.12 9.26 1.93 24.6 17.3 5.49 17.38 2.17 2.16 0.25 35.52 2.2 6.44 0.52 0.6 64.59 21.84
CCL20627 (BN171_770004)
 0.0 0.0 0.0 0.0 0.0 1.35 0.0 0.0 0.0 0.0 0.0 0.0 2.51 0.0 0.0 0.0 1.17 0.0 1.55 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.18 0.0 0.0
CCL20660 (BN171_870001)
 59.87 14.29 41.53 26.3 62.36 58.3 12.89 60.67 9.36 21.52 22.49 16.19 60.34 61.71 19.27 85.89 36.64 67.78 55.51 67.13 19.21 7.69 63.78 77.24 113.45 57.29 5.93 67.31 27.58
CCL20662 (BN171_870003)
 5.18 0.87 7.28 6.06 9.27 15.65 37.34 1.96 3.73 38.28 41.56 33.81 32.42 7.22 2.47 29.31 12.16 6.54 17.6 6.38 2.57 5.69 20.12 6.7 21.41 3.48 12.0 34.4 22.06
CCL20663 (BN171_870004)
 5.08 4.97 5.74 7.62 2.96 3.24 8.23 1.57 4.1 5.72 3.6 6.18 18.06 5.14 7.44 6.84 4.98 2.34 10.39 4.17 10.35 1.48 11.51 4.56 5.32 2.2 8.94 7.6 3.88
CCL20664 (BN171_870005)
 2.39 2.58 2.21 3.08 2.08 4.19 4.46 1.27 1.54 3.87 2.21 1.99 10.65 3.16 3.5 4.01 2.09 1.25 4.32 1.84 5.75 0.0 3.98 1.71 2.24 0.82 1.45 2.89 1.82
CCL20665 (BN171_880001)
 1.38 1.06 1.53 3.36 1.95 0.0 1.43 0.82 0.88 1.91 0.32 1.58 2.36 1.02 2.22 2.22 1.16 1.05 0.02 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.61
CCL20666 (BN171_880002)
 1.68 1.27 1.11 2.16 1.2 0.0 1.96 0.96 1.11 1.52 0.8 0.71 2.15 1.1 1.74 2.51 0.94 0.86 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)