Heatmap: Cluster_58 (HCCA)

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Gene	strain_5001420,control,fromUrine	strain_5001420,fromUrine	ch1034,13h_old_biofilm,biofilm_dispersed	ch1034,13h_old_biofilm,sessile	ch1034,7h_old_biofilm,sessile	ch1034,Log,planktonic	ch1034,Stationary,planktonic	control,fromNasalSwab,fromSwine	dmc1097	dmc1097,control,fromBlood	dmc1097,fromBlood	ekp16,fromSputum	eugenol,fromNasalSwab,fromSwine	fromBlood	fromHospitalPatients	fromRectalSwab	fromUrine	je01	k26,mero_susceptible,fromHospitalPatients	k56,mero_resistant,fromHospitalPatients	kctc2242	kp4,FeLimited,fromRespiratoryTract	kpr1,+CTX	kpr1,+gent	kpr1,+mero	kpr1,+TMP/SMX	kpr1,control	kpr2,+CTX	kpr2,+gent	kpr2,+mero	kpr2,+TMP/SMX	kpr2,control	kps1,+CTX	kps1,+gent	kps1,+mero	kps1,+TMP/SMX	kps1,control	kps2,+CTX	kps2,+gent	kps2,+mero	kps2,+TMP/SMX	kps2,control	mrsn 1319	ms6671	njst258-1,FeLimited,fromUrine	njst258-1,fromUrine	rb011,+mero,mero_resistant	rb011,control,mero_resistant	rb012,+gent,gent_resistant	rb012,control,gent_resistant	rb013,+cip,cip_resistant	rb013,control,cip_resistant	rb039,+cip,cip_resistant	rb039,+mero,mero_susceptible	rb039,control,cip_resistant	rb039,control,mero_susceptible	rb040,+cip,cip_susceptible	rb040,+gent,gent_susceptible	rb040,control,cip_susceptible	rb040,control,gent_susceptible	rb041,+cip,cip_susceptible	rb041,control,cip_susceptible	rb121,+gent,gent_susceptible	rb121,+mero,mero_susceptible	rb121,control,gent_susceptible	rb121,control,mero_susceptible	rb122,+gent,gent_resistant	rb122,control,gent_resistant	rb257,+mero,mero_resistant	rb257,control,mero_resistant	uhkpc05,FeLimited,fromBlood	uhkpc05,fromBlood	uhkpc07	uhkpc07,control,fromUrine	uhkpc07,fromUrine	uhkpc18	uhkpc18,control,fromUrine	uhkpc18,fromUrine	uhkpc33	uhkpc33,control,fromUrine	uhkpc33,fromUrine	uhkpc48	uhkpc48,FeLimited,fromUrine	uhkpc67	uhkpc67,control,fromBlood	uhkpc67,fromBlood	vakpc297	vakpc297,FeLimited,fromUrine
AGT22728 (N559_0941)	11.81	11.8	8.47	11.83	8.21	5.04	15.5	6.81	1.09	12.03	13.75	4.39	9.92	7.87	20.23	6.8	10.08	0.0	18.68	10.42	22.15	2.22	4.26	4.76	21.5	4.22	7.51	5.82	5.22	7.88	3.36	4.76	8.29	7.66	6.95	13.02	5.25	6.87	5.76	5.95	9.22	5.77	8.68	2.48	3.0	5.0	18.78	15.41	5.22	4.78	2.23	3.04	2.96	9.14	2.72	3.99	4.68	9.21	2.41	5.88	2.65	3.19	7.66	11.34	6.6	8.07	4.76	4.22	7.99	8.21	6.95	1.14	0.07	7.74	8.0	1.71	5.02	4.5	5.69	12.4	13.79	46.78	73.34	3.24	3.36	4.46	1.21	2.64
AGT22729 (FimH)	47.27	43.06	12.36	12.01	11.44	4.19	12.56	18.94	0.52	35.4	52.79	7.45	20.19	12.46	32.06	10.13	9.69	0.22	13.86	12.69	25.81	3.33	4.53	4.59	22.11	4.57	8.58	6.32	6.2	7.44	4.95	6.52	10.4	8.81	5.48	15.56	7.66	10.43	5.08	7.7	17.61	7.08	9.0	8.0	3.07	4.6	19.89	18.79	6.2	6.95	2.71	3.22	3.35	9.16	4.54	5.04	6.08	9.13	3.23	5.52	5.1	5.25	8.81	10.95	9.99	10.98	4.59	4.63	7.9	8.85	20.31	0.71	3.95	30.69	27.7	2.13	3.9	4.27	3.92	50.98	46.33	137.69	330.17	2.36	3.59	4.79	0.38	2.64
AGT22730 (N559_0943)	35.45	32.49	16.72	10.21	10.44	4.04	10.7	21.16	3.84	33.49	40.68	6.72	20.29	26.67	29.81	7.7	13.06	0.06	4.43	3.64	15.95	3.98	2.1	1.69	16.3	2.69	4.89	3.52	2.33	1.63	1.29	2.62	11.88	5.84	4.0	10.46	7.86	6.82	4.0	8.64	14.06	6.37	4.45	8.6	1.45	4.14	15.08	12.11	2.33	3.8	0.25	1.02	1.5	7.97	1.61	2.57	3.58	6.6	1.5	5.07	2.06	1.85	5.84	9.85	13.42	10.98	1.69	2.59	2.49	2.17	19.71	0.97	3.35	20.07	19.01	2.46	3.03	3.92	4.85	44.96	38.65	387.79	396.93	2.8	2.38	2.8	2.21	1.89
AGT22731 (FimF)	33.77	31.48	14.03	6.54	7.5	2.45	4.62	21.09	0.0	27.78	33.7	2.91	21.26	8.62	21.44	1.12	2.73	0.0	2.28	2.11	15.67	2.1	0.68	0.44	5.99	1.31	1.73	2.09	2.2	1.83	1.3	1.09	8.72	5.11	2.3	3.56	4.61	3.22	2.46	4.08	4.76	3.25	2.63	6.76	0.77	1.49	5.88	4.65	2.2	1.3	0.48	0.31	1.0	3.77	0.64	1.26	1.86	4.29	0.45	3.17	1.21	1.0	5.11	4.04	7.5	5.07	0.44	0.6	3.33	0.57	15.38	0.84	0.22	17.31	19.04	0.61	1.14	1.29	0.0	30.44	30.31	42.96	264.96	1.1	1.98	1.71	0.0	0.91
AGT22732 (FimD)	17.8	15.5	20.78	11.18	11.0	5.62	10.53	15.53	2.99	15.73	18.18	2.54	18.02	12.4	17.08	4.01	9.29	0.07	6.01	4.61	13.4	1.17	2.75	2.49	12.49	3.16	5.18	5.2	4.55	4.32	2.54	4.11	10.28	10.74	4.07	10.12	5.95	5.77	3.75	7.13	11.22	5.04	3.69	7.12	0.94	2.73	11.69	11.43	4.55	4.53	1.33	1.8	2.01	5.72	1.9	3.53	2.96	6.1	1.28	3.31	3.48	2.42	10.74	10.84	8.94	7.37	2.49	2.56	4.27	3.83	7.82	0.83	0.46	8.99	9.18	0.54	1.43	1.61	0.92	15.44	19.09	185.06	121.87	1.27	1.32	1.36	0.86	1.01
AGT22733 (FimC)	39.08	42.04	65.73	27.24	31.55	17.08	10.91	53.49	12.21	38.38	54.92	4.73	61.71	38.51	36.56	8.99	25.18	0.66	1.23	1.04	28.55	3.07	1.17	1.01	11.72	4.27	3.94	5.13	5.05	2.85	1.51	2.78	32.25	16.72	5.98	10.46	13.19	9.26	4.17	20.41	14.77	10.88	11.63	33.64	0.18	3.87	15.5	11.39	5.05	3.21	0.14	0.8	2.45	14.36	2.17	4.56	3.09	7.28	1.68	8.34	3.74	2.4	16.72	21.84	23.78	16.06	1.01	1.25	3.11	2.42	21.85	2.9	1.28	23.23	24.85	3.07	0.92	1.52	1.21	42.19	51.11	1358.2	436.82	3.16	1.45	1.46	0.98	0.88
AGT22734 (N559_0947)	84.74	70.89	63.82	26.54	37.47	16.39	12.78	67.19	12.67	73.18	81.32	7.51	76.87	63.64	56.6	9.17	39.82	0.44	0.94	0.8	22.51	2.58	0.64	0.46	9.29	6.42	3.39	8.23	7.13	1.41	0.38	4.68	46.51	40.37	8.3	13.96	23.89	14.21	8.73	31.5	23.34	14.59	20.94	19.6	0.27	3.3	12.17	12.01	7.13	7.84	0.0	0.83	1.38	19.72	1.64	5.14	2.14	9.22	2.63	11.67	4.54	2.68	40.37	24.87	44.44	21.98	0.46	0.19	1.57	4.0	36.77	5.1	2.62	48.65	44.9	3.58	1.14	1.69	7.41	77.81	86.79	4323.44	602.63	3.02	2.1	1.8	8.05	1.58
AGT22735 (N559_0948)	620.52	601.39	588.94	490.99	795.54	142.72	166.23	1012.16	34.6	437.11	594.5	87.44	901.16	1094.65	935.13	99.85	397.19	2.78	2.37	4.5	16.17	24.89	3.51	2.91	70.12	103.39	39.97	74.83	51.53	4.38	4.87	35.82	882.17	342.4	108.61	241.93	421.72	191.28	97.16	494.21	342.06	366.76	251.29	1380.8	2.08	5.59	274.51	305.99	51.53	55.17	1.25	0.88	16.5	214.09	18.44	130.83	37.37	79.27	27.61	213.55	55.37	50.22	342.4	348.54	691.89	614.0	2.91	1.51	59.32	84.67	286.34	14.62	4.01	354.96	336.96	0.58	6.43	5.74	5.56	686.04	743.33	2627.5	4895.22	3.33	13.34	10.44	4.92	5.53

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)