Heatmap: Cluster_30 (HCCA)

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Gene	10403S,Log	10403S,WT	10403S,LMRG 00730 deleted	10403S,delta sigB,Log	10403S,WT,Log	10403S,virR deleted,Log	10403S,WT,Bile	10403S,WT,ctrl	10403S,delta sigB,Bile	10403S,delta sigB,ctrl	10403S	ATCC 19115,Lactic acid(1h)	ATCC 19115,ctrl	WT	EGD	ATCC 19115,linalool	EDGe,37C(20min)	EDGe,20C(20min)	EDGe,20C(3h)	EDGe,Light	EDGe,Dark	EGD,MQ Water(0h)	EGD,MW Water(10min)	EGD,0.1875% L.plantarum(10min)	EGD,MQ Water(1h)	EGD,0.1875% L.plantarum(1h)	EGD,0.1875% L.plantarum+1mg/ml Pro-K(1h)	EGD,MQ Water(at 0h)	EGD,MQ Water(at 3h)	EGD,Ampicillin 0.03g/ml(at 3h)	EGD,Tetracycline 0.035g/ml(at 3h)	EGD,Gentamicin 0.3g/ml(at 3h)	EGD,Co-trimoxazole 0.2g/ml(at 3h)	EGDe	EGD,WT	37C,Late-Log	EGD,delta Lmo1408	EGD,delta Lmo0422	EGD,delta Lmo0599	EGDe,Lincomycin 0.25g/ml	EGDe,Chloramphenicol 0.4g/ml	EGDe,Erythromycin 0.03125g/ml	EGDe,Kanamycin 0.5g/ml	EGDe,Ofloxacin 2g/ml	EGDe,Ampicillin 1g/ml	EGDe,Bacitracin 8g/ml	EGDe,ctrl	EGDe,Lincomycin 0.5g/ml	EGDe,WT	EGDe,delta lftR	EGDe,37C,Late-Log	EGDe,WT,Light	EGDe,WT,Dark	EGDe,Light	EGDe,Dark	FFH,30C	FFH,10C	H1,37C,Late-Log	H2,37C,Late-Log	H3,37C,Late-Log	H5,37C,Late-Log	H6,37C,Late-Log	H7,37C,Late-Log	H8,37C,Late-Log	H10,37C,Late-Log	H11,37C,Late-Log	H17,37C,Late-Log	H19,37C,Late-Log	H27,37C,Late-Log	H28,37C,Late-Log	H31,37C,Late-Log	H32,37C,Late-Log	568	H7858,Log	H7858,WT,Bile	H7858,WT,ctrl	H7858,delta sigB,Bile	H7858,delta sigB,ctrl	LL195,ctrl	LL195,acid	Lm1,4C,Late-Stationary	Lm1,4C,Late-Log	Lm1,4C,Log	Lm1,WT,4C,Log	Lm1,4C,Lag	Lm1,20C,Late-Stationary	Lm1,20C,Late-Log	Lm1,20C,Log	Lm1,WT,20C,Log	Lm1,20C,Lag	LO28,37C,Late-Log	N12-0605,ctrl	N12-0605,acid	N13-0047,ctrl	N13-0047,acid	N13-1507,ctrl	N13-1507,acid	rli47,Log	WT,Log	Scott A,37C,Late-Log
AKI48673 (L2625_00741)	29.6	49.29	35.64	45.88	26.65	23.04	73.1	73.31	60.91	70.5	67.43	1485.19	203.35	134.04	96.97	181.89	118.38	87.47	91.94	85.57	78.26	76.85	87.66	89.51	90.57	83.47	71.14	100.09	134.24	108.14	94.18	162.45	135.89	37.87	126.11	124.89	111.26	87.2	127.39	85.02	61.41	74.47	64.62	55.72	66.22	81.11	78.65	109.32	114.24	10918.48	98.35	85.2	99.13	87.45	69.95	138.57	120.55	135.23	372.28	347.84	304.78	437.06	374.28	111.39	564.39	135.09	223.85	281.44	247.85	279.99	185.41	233.19	72.77	165.51	287.75	162.69	282.17	219.56	109.94	102.33	378.83	105.92	91.87	55.49	33.82	99.12	193.0	63.32	67.65	29.08	101.94	85.72	54.3	81.94	118.57	74.48	146.34	36.95	32.8	125.69
AKI48927 (drrA)	22.8	17.05	19.43	23.56	11.54	10.89	25.57	29.72	25.44	25.03	22.04	10.21	6.24	17.11	11.53	1.44	5.35	5.74	5.22	10.76	9.17	9.98	14.45	14.15	10.74	13.08	13.05	14.83	13.78	15.35	17.36	16.91	13.11	6.38	7.73	10.59	8.82	7.12	8.77	9.71	6.2	4.8	2.85	5.56	7.49	10.75	7.28	9.29	12.18	7315.36	16.1	9.6	13.83	12.68	10.07	5.65	7.15	21.16	14.58	23.08	22.55	9.63	8.41	17.46	27.01	12.12	16.68	9.08	16.92	6.96	23.12	22.74	5.41	2.53	3.03	1.85	1.39	1.67	7.86	11.76	49.42	28.68	29.9	23.43	12.69	23.08	21.58	15.65	17.17	8.27	30.25	6.75	8.02	4.99	16.31	6.15	17.91	5.91	5.35	7.23
AKI48928 (L2625_01009)	12.18	15.68	18.94	14.23	5.54	5.41	9.11	14.36	10.72	9.61	10.21	26.35	7.45	7.71	12.66	4.04	5.01	4.39	4.49	8.1	9.01	6.12	9.45	9.72	7.74	5.86	8.5	11.52	8.47	11.75	10.7	10.61	9.16	8.02	6.82	10.56	5.47	3.8	7.24	6.49	7.52	4.55	9.17	5.27	6.56	7.32	5.48	6.92	9.69	3825.37	9.84	7.49	10.92	10.0	9.6	5.36	5.44	27.93	11.45	22.41	24.77	10.33	6.82	8.93	20.62	19.41	21.99	14.52	10.23	5.46	21.73	29.07	4.63	3.14	3.26	3.42	1.94	2.29	6.47	8.79	33.9	21.56	24.15	20.01	15.55	14.46	15.65	13.92	16.3	9.81	12.4	7.07	8.39	4.6	10.78	5.55	10.45	4.77	5.43	6.48
AKI48929 (L2625_01010)	34.18	70.4	84.67	49.62	144.02	145.99	33.6	59.1	38.25	39.22	32.64	6.63	5.05	69.82	124.85	3.25	83.27	108.82	91.81	223.07	204.41	102.0	123.71	104.06	106.85	87.61	108.93	101.25	85.46	98.31	111.82	84.58	86.69	173.67	116.82	104.76	91.29	91.41	93.84	106.45	109.06	103.27	107.18	106.44	108.46	84.82	110.46	99.12	120.0	630.07	202.51	161.59	219.76	220.96	197.77	89.32	121.12	103.43	28.09	27.23	28.1	38.13	46.91	122.06	40.56	105.15	137.5	36.46	26.55	33.86	106.68	147.14	109.55	27.38	44.55	37.35	46.64	43.16	98.38	64.94	81.24	163.38	232.5	220.59	122.37	56.0	68.0	144.27	187.35	144.65	125.72	87.42	80.2	100.66	77.68	109.03	35.32	113.19	106.0	54.99

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)