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Heatmap: Cluster_13 (HCCA)

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(Showing raw values)

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Gene
BHI
Basal Medium
CD196,BHI
CD196,Basal Medium
CD196,Log,BHI
ClnR mutant
LB-CD16
Log,BHI
LuxS KO
ND-CD12
ND-CD13
ND-CD17
R20291
R20291,BHI
R20291,Basal Medium
R20291,Heme+
R20291,Log
R20291,Log,BHI
Strain 630
Strain 630,BHI
Strain 630,Basal Medium
Strain 630,Faecal water+
Strain 630,HPUra+
Strain 630,Lag
Strain 630,Log
Strain 630,Log,BHI
Strain 630,Sporulating
TW11
UK1
CCL16971 (BN171_1030021)
 0.24 0.31 0.08 0.41 0.31 0.38 0.29 0.24 0.39 0.16 0.58 0.27 1.46 0.2 0.5 2.99 0.76 0.31 2.09 0.14 0.55 0.42 2.08 0.59 0.49 0.17 1.32 1.77 0.36
CCL16972 (BN171_1030022)
 0.33 0.49 0.24 0.48 0.4 0.48 1.47 0.38 0.39 0.86 1.26 0.62 2.5 0.18 0.58 3.76 1.16 0.64 2.91 0.47 0.47 2.22 1.31 0.73 0.84 0.51 2.98 2.39 1.49
CCL16973 (BN171_1030023)
 0.71 1.42 0.47 1.18 0.98 0.94 2.73 1.09 0.6 0.86 0.76 0.49 2.6 0.15 0.93 4.14 1.58 0.87 3.38 0.46 0.87 5.26 1.59 0.92 0.95 0.66 3.95 2.47 0.98
CCL16974 (etfB)
 0.96 1.16 0.58 0.82 0.94 1.3 1.02 0.77 0.33 1.14 0.37 1.53 3.05 0.3 1.25 3.22 1.5 0.86 4.43 0.76 1.46 4.81 2.46 1.05 1.08 0.6 4.11 3.37 1.2
CCL16975 (etfA)
 5.41 4.27 3.82 6.49 4.71 1.96 4.48 3.83 1.48 3.3 2.62 2.45 4.77 2.81 3.85 6.91 3.38 4.56 7.25 4.04 3.61 8.0 7.58 2.64 2.15 2.65 6.55 6.86 1.87
CCL17030 (BN171_1090011)
 0.63 0.53 0.61 1.5 0.68 0.63 0.96 0.33 2.64 1.19 1.15 0.45 2.38 0.62 0.82 2.52 0.61 0.97 2.31 0.55 1.43 3.37 1.69 0.68 0.59 0.28 1.47 3.17 0.37
CCL18434 (BN171_2320011)
 1.44 2.87 1.27 3.38 2.14 0.99 67.09 1.71 1.5 4.65 2.65 3.68 5.24 0.86 2.26 4.15 2.07 1.66 2.76 1.22 2.56 19.44 2.2 1.27 1.06 1.42 3.79 4.48 3.6
CCL18435 (BN171_2320012)
 1.65 3.56 2.15 4.32 2.68 2.17 81.22 2.56 1.25 9.88 5.55 6.88 7.36 0.92 3.79 4.14 3.02 2.89 4.71 2.16 3.78 26.89 3.56 2.21 2.3 1.79 2.49 4.66 4.21
CCL18436 (pyrD)
 2.87 5.64 2.59 6.58 4.93 4.47 148.6 5.86 1.35 13.71 9.69 9.71 22.5 2.19 7.03 17.03 9.99 6.69 7.81 5.74 5.77 67.6 4.89 2.52 9.77 6.11 5.23 9.69 9.67
CCL18437 (BN171_2320014)
 2.26 3.58 2.23 4.6 4.16 6.13 138.92 3.43 1.28 11.56 7.89 9.06 22.27 1.46 5.28 11.89 7.36 4.95 7.61 3.84 4.29 45.34 5.03 2.25 9.43 4.34 5.6 8.35 8.08
CCL18438 (BN171_2320015)
 1.91 2.75 1.66 4.27 2.98 5.2 187.74 2.83 1.56 12.72 11.5 12.14 24.39 1.61 4.31 11.45 6.58 4.09 6.87 3.18 4.62 39.29 4.93 3.44 9.23 2.94 6.44 7.21 13.33
CCL18439 (BN171_2320016)
 7.9 9.47 7.65 9.63 10.62 13.44 288.2 11.04 4.78 20.48 17.47 23.29 38.86 6.25 10.96 16.67 17.9 11.8 16.45 13.59 11.99 57.7 12.76 8.02 11.56 11.26 20.51 14.86 24.79
CCL18440 (BN171_2320017)
 10.49 11.22 12.69 18.1 18.96 13.91 284.9 14.93 2.86 22.9 21.84 25.56 60.32 10.15 15.11 22.46 21.58 16.13 31.28 19.96 12.0 100.25 20.49 9.87 18.5 19.18 72.81 27.65 30.74
CCL18502 (BN171_240007)
 122.27 142.12 135.84 136.01 84.11 70.7 525.66 105.76 66.14 213.27 221.31 275.13 351.42 130.65 148.59 297.35 197.37 127.12 379.75 119.3 172.12 400.74 194.17 216.38 216.89 47.11 504.33 255.51 214.27
CCL18988 (adhE)
 1.93 11.76 3.14 6.24 2.6 1.88 440.0 2.01 3.32 21.74 3.55 8.83 3.6 0.8 4.22 4.66 2.46 2.15 9.18 1.53 15.42 6.49 5.9 3.8 3.72 1.09 8.52 6.68 2.26
CCL19027 (BN171_2810002)
 2.2 2.26 2.24 4.74 2.2 0.9 48.01 0.99 2.31 2.53 1.79 1.06 4.23 1.76 2.53 2.87 4.06 1.14 1.7 1.89 3.88 1.13 2.21 1.75 0.92 0.52 5.7 12.52 0.81
CCL19028 (BN171_2810003)
 3.03 6.47 7.52 9.52 3.41 5.71 279.49 2.66 8.48 3.96 4.88 8.5 12.76 5.55 4.44 10.88 21.22 2.66 5.61 7.73 11.8 5.21 6.43 8.39 6.24 1.94 14.31 58.76 2.79
CCL19029 (BN171_2810004)
 2.15 3.38 2.15 4.21 2.39 0.87 100.62 0.99 2.41 1.96 2.24 2.12 4.65 0.96 2.77 4.28 14.56 1.62 2.44 1.27 7.67 4.52 7.31 3.74 1.5 0.89 7.65 3.99 1.69
CCL19030 (BN171_2810005)
 1.7 2.11 1.85 3.26 1.97 0.8 55.1 1.27 2.26 3.03 2.73 3.9 4.85 1.13 1.95 4.16 12.46 1.44 1.94 1.33 4.94 1.73 4.27 1.69 1.55 1.02 1.79 5.68 3.51
CCL19304 (BN171_3020016)
 0.94 1.38 0.83 2.76 0.92 0.26 16.08 0.66 0.89 4.23 2.71 1.4 1.98 0.62 1.8 2.31 0.94 0.71 1.23 0.56 2.24 1.53 1.42 0.61 0.55 0.4 0.98 3.39 1.21
CCL19305 (garR)
 0.79 2.37 0.84 3.83 0.75 0.12 25.46 0.26 0.68 1.36 1.65 0.55 1.56 0.8 4.08 1.5 0.24 0.92 0.58 0.36 2.3 0.28 0.57 0.07 0.14 0.12 1.43 2.96 0.74
CCL19535 (BN171_3220004)
 1.45 2.96 1.91 2.55 2.37 1.58 7.13 3.02 0.63 2.9 2.95 5.19 3.06 1.68 2.48 2.54 1.15 2.93 5.18 4.52 1.76 1.0 3.14 3.34 0.66 2.29 0.31 3.94 2.43
CCL19554 (BN171_3260005)
 6.59 8.74 5.42 6.73 5.18 6.67 8.59 6.4 4.97 5.09 2.47 4.12 6.17 3.65 5.71 7.42 3.74 5.97 7.39 7.44 8.79 6.45 3.61 3.88 3.85 6.52 6.81 4.98 0.2
CCL19760 (BN171_3460004)
 0.37 3.56 1.06 15.0 1.63 0.04 15.12 0.13 0.13 6.22 2.93 6.42 1.93 0.42 1.91 0.53 0.67 1.12 3.42 0.17 1.91 0.0 0.56 0.19 0.1 0.07 0.42 2.41 0.46
CCL19911 (ord)
 1.35 3.41 1.7 2.41 1.14 0.63 9.59 1.05 0.65 4.98 1.11 3.63 3.24 0.74 2.58 3.47 0.92 0.65 4.43 0.79 1.43 3.74 1.31 0.24 0.28 0.47 0.7 3.33 0.47
CCL19912 (ortA)
 0.94 2.24 0.89 2.46 0.71 0.55 18.21 0.0 0.27 10.89 3.74 3.68 3.49 0.16 1.12 2.88 0.44 1.24 2.3 1.05 1.2 0.0 0.8 0.5 0.41 0.15 1.81 4.3 0.93
CCL19913 (ortB)
 0.79 2.69 1.03 2.23 0.78 0.6 19.56 0.49 0.85 8.07 1.43 5.74 2.86 0.54 1.77 2.84 0.69 0.52 2.7 0.8 1.78 4.73 1.18 0.52 0.4 0.43 2.3 2.83 1.33
CCL19914 (oraS)
 0.89 7.47 0.88 4.85 1.75 0.38 21.8 0.41 0.0 5.43 0.0 8.65 2.86 0.28 2.73 2.03 0.97 0.78 2.5 0.35 1.12 1.08 0.99 0.28 0.09 0.56 3.09 2.39 2.33
CCL19915 (oraE)
 0.68 1.74 0.48 1.73 0.54 0.43 17.61 0.75 0.58 5.55 1.85 4.76 2.66 0.26 1.35 2.97 0.84 0.77 4.4 0.38 1.2 4.24 5.24 1.43 0.8 0.54 2.42 3.23 1.99
CCL19916 (BN171_360010)
 0.19 1.06 0.2 1.34 0.22 0.63 10.41 0.24 0.38 3.86 1.0 3.46 2.26 0.21 0.71 2.26 0.38 0.16 3.45 0.52 1.19 2.76 5.77 1.34 0.63 0.41 2.33 2.94 1.02
CCL19917 (orr)
 0.2 0.76 0.2 0.82 0.44 0.79 5.56 0.17 0.18 2.7 0.57 2.66 1.42 0.14 0.61 1.89 0.21 0.11 3.71 0.68 0.97 2.54 7.57 0.84 0.68 0.4 1.24 2.77 0.47
CCL19918 (BN171_360012)
 0.83 1.74 0.74 1.48 0.71 0.79 6.01 0.54 0.41 3.16 0.72 1.6 2.52 0.59 0.94 3.38 0.85 1.03 5.51 1.27 1.62 4.76 10.4 2.62 1.86 0.91 3.22 4.37 0.75
CCL20094 (BN171_3690038)
 5.73 3.66 4.35 3.82 7.19 4.75 63.82 7.22 2.7 13.93 7.12 12.12 6.79 5.27 4.28 9.98 5.7 6.6 10.39 4.6 3.94 10.56 8.85 4.01 5.55 4.04 6.06 9.04 6.38
CCL20095 (dapA)
 3.56 1.89 2.85 3.03 3.19 2.73 41.77 3.57 0.77 8.93 4.38 10.2 5.35 1.42 2.44 8.16 2.79 2.58 6.27 2.36 1.67 2.84 5.66 1.84 3.76 1.55 0.85 1.4 3.32
CCL20096 (BN171_3690040)
 1.65 0.93 0.8 0.57 0.97 1.89 51.45 0.67 0.35 7.49 3.92 5.57 3.34 0.47 0.87 5.45 1.62 1.38 4.92 0.9 1.59 0.95 3.55 1.74 3.78 1.07 0.63 2.82 1.28
CCL20097 (BN171_3690041)
 1.29 0.72 1.33 0.89 0.96 1.18 29.05 0.99 1.08 5.91 2.16 4.88 4.42 0.72 0.96 6.7 1.74 1.33 4.68 0.99 1.26 2.58 3.84 2.06 3.78 1.12 0.69 4.4 1.15
CCL20098 (BN171_3690042)
 2.75 0.39 3.28 2.65 2.62 4.32 36.66 0.34 1.21 4.84 5.92 1.49 4.72 1.92 1.48 6.23 3.14 2.79 8.25 4.89 2.84 2.15 5.29 2.05 4.03 2.77 0.54 7.16 5.76
CCL20099 (BN171_3690043)
 1.1 0.55 1.28 0.72 1.3 2.84 26.8 0.56 0.8 3.98 2.22 2.84 3.31 0.99 0.67 5.13 1.24 0.97 5.14 1.59 1.16 1.21 3.31 1.39 2.32 0.95 0.47 3.73 1.3
CCL20241 (BN171_3870002)
 3.96 4.11 3.98 6.33 4.43 9.9 86.02 4.47 0.99 6.04 4.02 5.39 43.49 1.85 4.97 17.53 12.88 4.52 24.99 7.37 3.92 41.21 10.91 4.22 10.38 4.67 57.9 15.07 10.79
CCL20255 (BN171_390009)
 0.22 0.81 0.55 1.53 1.27 0.22 9.75 0.19 0.17 0.14 0.12 0.37 1.66 0.34 0.76 3.45 0.66 0.36 2.33 0.62 1.8 0.89 0.54 0.06 0.06 0.54 1.68 3.95 0.0
CCL20256 (BN171_390010)
 7.7 8.33 12.91 13.69 10.19 15.4 18.77 5.85 3.31 7.49 3.84 3.07 7.86 2.86 4.98 12.25 4.17 6.25 13.41 9.63 6.49 1.37 9.76 2.54 5.67 8.72 7.0 7.89 2.94
CCL20257 (BN171_390011)
 4.0 3.78 4.95 7.07 7.66 7.73 23.93 2.66 0.66 5.32 3.22 1.84 5.07 1.86 3.61 9.49 2.55 4.12 10.19 7.54 5.34 3.12 7.93 2.22 4.03 7.92 5.26 6.41 1.86
CCL20258 (BN171_390012)
 4.32 6.17 6.2 11.4 6.85 10.3 39.44 3.1 0.94 5.87 7.66 5.57 7.93 2.46 5.36 12.54 3.53 4.5 12.31 7.32 11.19 4.94 8.5 5.59 6.56 4.78 11.38 6.08 4.57
CCL20259 (BN171_390013)
 4.13 8.29 5.45 12.12 6.18 8.66 38.37 4.46 0.7 12.29 6.44 6.81 6.74 2.21 7.18 13.11 3.82 4.93 15.4 8.78 19.76 7.75 9.37 8.79 8.59 7.92 19.05 10.05 3.84
CCL20511 (BN171_60002)
 0.52 1.95 0.48 2.04 0.53 0.25 2.45 0.62 0.44 3.2 3.31 2.65 2.17 0.36 2.39 3.08 0.92 0.69 2.81 0.4 1.18 1.52 2.57 0.61 0.34 0.36 0.94 4.27 1.98
CCL20519 (BN171_60010)
 1.17 5.91 0.58 4.61 0.63 0.64 5.1 1.49 0.58 4.27 0.44 2.35 2.05 0.55 5.96 3.55 0.75 1.2 4.96 1.42 7.59 0.72 1.68 0.69 0.98 0.61 2.06 3.02 5.01
CCL20521 (BN171_60012)
 0.64 2.8 0.61 3.1 0.62 0.38 5.32 0.43 0.48 2.62 1.63 3.76 2.43 0.53 2.24 3.86 0.7 0.71 4.53 0.58 8.55 1.66 1.87 1.26 0.93 0.4 2.27 3.29 1.69
CCL20522 (BN171_60013)
 0.0 0.0 0.0 0.14 0.0 0.25 1.31 0.0 0.0 1.4 0.19 1.02 0.69 0.0 0.0 1.1 0.09 0.0 1.09 0.07 0.0 0.0 0.56 0.04 0.04 0.0 0.06 0.76 0.75
CCL20523 (BN171_60014)
 1.14 3.77 0.72 3.85 0.54 0.48 11.54 0.71 0.73 5.03 0.37 6.66 2.11 0.6 1.56 2.96 0.73 0.91 4.1 1.15 8.48 1.9 1.49 1.26 1.3 0.79 2.54 4.26 1.36
CCL20625 (BN171_770002)
 0.7 0.91 0.48 1.34 0.58 0.58 2.55 0.48 0.32 4.69 1.62 2.45 1.77 0.39 1.26 2.94 0.71 0.75 2.49 0.71 1.03 2.34 2.52 0.75 0.75 0.47 1.85 2.53 2.1
CCL20742 (BN171_970001)
 32.3 4.58 22.8 4.11 5.9 73.79 1216.99 4.21 3.13 32.29 2.29 16.15 5.41 28.24 4.11 2.43 1.46 5.2 42.44 120.58 14.69 0.64 2.51 2.84 6.54 5.62 9.44 3.86 1.03
CCL20743 (glpK)
 0.93 1.53 1.18 2.49 0.91 7.09 844.46 0.48 0.44 10.91 1.79 4.88 1.65 1.24 2.66 2.2 0.61 1.24 4.87 2.03 1.88 2.09 1.61 0.76 0.73 0.46 1.02 3.62 1.54
CCL20744 (BN171_970003)
 1.92 3.79 2.7 6.72 3.09 2.92 770.86 1.41 1.66 11.8 1.61 4.72 2.92 1.41 5.32 3.42 1.8 2.27 3.39 2.64 3.61 3.75 1.55 1.35 1.71 1.66 1.96 3.07 0.89

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)