Heatmap: Cluster_3 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
0.02% arabinose,A1552
0.5mM indole,N16961
37C,C6706
arabinose-,A1552
E-exponential,5uM AI-2,C6706
E-exponential,5uM CAI-1,C6706
E-exponential,5uM DPO,C6706
E-exponential,Water,C6706
empty Tn
E-stationary,0.2% L-arabinose,C6706
LB(2% NaCl),30C,N16961
LB,C7258
Log,0.2% L-arabinose,C6706
Methanol,N16961
O395
Polymyxin,C6706
Polymyxin,VC1639
riboflavin-,N16961
riboflavin+,N16961
TnqstR
TntfoY
TntoX-strep
Water,Rich,N16961
KNA48019 (VCV51_030116)
0.11 -0.31 -1.69 -1.0 -0.43 -0.62 -0.35 -0.58 0.1 -0.27 0.79 0.58 -0.21 -0.3 0.26 0.61 0.87 -0.56 -0.36 -0.07 0.38 0.4 0.12
KNA49512 (VCV51_030313)
-1.15 -1.6 -2.08 -1.65 1.04 0.69 0.97 0.93 -1.06 -0.87 0.39 0.4 -0.83 -1.43 1.08 0.33 0.33 0.64 0.07 -0.97 -0.92 -0.77 -0.53
KNA49513 (VCV51_030314)
-3.12 -3.81 -4.79 -3.39 0.43 -0.13 0.24 -0.19 -2.98 -1.06 1.22 2.45 -1.35 -3.72 2.97 -1.8 -1.25 -2.23 -2.23 -2.94 -2.94 -2.86 -2.85
KNA49655 (VCV51_030211)
-1.19 -1.5 -1.2 -1.32 0.16 -0.48 0.34 0.32 -1.14 -0.63 1.7 0.7 -1.08 -1.23 0.92 -0.46 0.04 0.95 1.02 -0.97 -1.13 -0.71 -0.06
KNA49656 (VCV51_030212)
-3.08 -3.11 -3.68 -3.6 1.91 0.67 1.6 2.02 -2.93 -2.49 2.58 0.06 -3.01 -3.06 -0.43 -1.81 -1.7 -1.77 -1.75 -2.61 -2.78 -2.61 -2.3
KNA52473 (VCV51_030135)
-1.66 -1.3 -2.87 -2.2 1.22 0.19 0.84 1.3 -1.15 -1.23 1.52 -0.78 -1.35 -1.29 1.13 -0.24 -0.04 0.99 -0.19 -0.88 -0.92 -0.77 -0.91
KNA52474 (VCV51_030136)
-3.98 -2.33 -5.15 -4.27 2.01 0.46 0.89 2.22 -2.62 -4.04 1.83 -1.52 -4.3 -2.29 1.95 -2.98 -3.07 0.3 -1.62 -2.22 -2.72 -2.08 -4.05
KNA52475 (VCV51_030137)
-2.24 -1.95 -2.79 -2.75 0.88 -0.35 0.19 0.88 -2.1 -1.44 1.95 -0.56 -1.89 -1.84 2.57 -1.15 -0.77 0.99 -0.15 -2.23 -2.17 -1.74 -1.59
KNA52476 (VCV51_030138)
-2.85 -2.09 -3.19 -3.1 1.5 0.29 0.88 1.61 -2.5 -1.55 1.72 -0.86 -1.9 -2.04 2.16 -0.97 -0.94 0.59 -0.48 -2.31 -2.3 -1.88 -2.53
KNA52477 (VCV51_030139)
-1.34 -2.25 -1.93 -1.95 1.02 -0.21 0.45 1.06 -1.7 -0.99 0.94 0.02 -1.35 -2.13 2.39 -0.26 -0.06 0.58 0.19 -1.72 -1.65 -1.55 -0.91
KNA52731 (VCV51_031545)
-0.89 -2.65 1.28 -0.91 -0.65 -1.62 -1.57 -0.76 -1.03 -1.46 -3.84 2.56 -1.56 -2.85 2.52 -1.64 -1.57 -0.55 -0.65 -1.38 -1.35 -1.49 0.39
KNA53592 (VCV51_030070)
-1.12 -2.41 -1.8 -0.64 0.78 0.41 0.81 0.69 0.1 -1.86 0.35 0.14 -2.12 -2.31 2.19 -0.36 -0.39 -0.45 -0.99 -0.33 -0.93 -0.34 0.49
KNA54650 (VCV51_033221)
-0.68 1.25 -2.75 -1.7 -3.06 -2.84 -2.88 -3.4 0.62 -0.39 1.0 0.36 -0.19 0.92 0.45 -1.03 -1.4 -1.71 -1.51 -0.06 1.87 1.1 0.08
KNA54892 (VCV51_033127)
-1.4 0.94 -0.78 -1.48 0.11 -0.17 -0.13 -0.04 -0.41 -0.95 0.8 0.2 -0.56 1.12 0.29 0.06 0.36 0.44 0.41 -0.46 -0.75 -0.49 -0.64
KNA54960 (VCV51_031748)
-0.12 0.21 -0.86 -0.44 0.11 -0.28 -0.28 -0.07 -1.57 -0.24 1.4 -0.88 0.32 -0.0 1.36 -1.32 -0.84 0.44 0.31 -0.8 -1.58 -1.22 0.92
KNA55028 (VCV51_031712)
-0.63 0.4 -1.01 -1.22 0.1 0.03 0.07 0.05 -0.09 -0.54 0.29 0.15 -0.55 0.36 0.06 0.24 -0.03 0.52 0.59 -0.19 0.0 -0.13 0.09
KNA55047 (VCV51_033196)
-0.01 0.45 -1.49 -0.13 0.26 0.26 0.39 0.27 -1.11 -0.75 1.08 -0.76 0.01 0.46 -0.11 0.16 -0.22 0.32 0.12 -0.88 -0.27 -1.23 0.35
KNA55641 (VCV51_030958)
0.59 0.04 -3.0 0.1 -0.71 -0.72 -0.44 -0.87 0.36 -0.72 0.83 0.37 0.16 -0.0 0.31 0.53 0.66 -0.08 -0.26 0.13 -0.75 0.19 -0.31
KNA55656 (VCV51_033019)
-1.86 -0.7 -2.86 -2.77 -1.17 -1.05 -1.39 -1.15 -1.01 0.03 2.7 2.56 1.31 -0.48 0.15 -1.55 -1.78 -5.12 -4.7 -1.77 -2.77 -2.15 -1.07
KNA55701 (VCV51_033028)
0.16 -0.5 -1.48 -0.08 -0.42 -0.75 -0.51 -0.44 0.37 -0.31 -0.23 0.53 -0.77 -0.67 1.45 -0.41 -0.69 0.24 0.39 0.12 0.12 0.2 0.63
KNA56005 (VCV51_033003)
-0.91 -0.44 -1.27 -1.26 -0.04 0.2 0.28 0.03 -0.76 0.29 0.53 1.33 -0.24 -0.93 2.19 -0.12 -0.8 -1.05 -1.05 -0.93 -1.02 -0.64 -0.45
KNA56300 (VCV51_030620)
-1.08 1.68 -2.62 -0.72 -3.05 -2.69 -2.7 -3.55 -0.98 0.03 2.93 1.11 -1.0 1.56 -4.12 -0.8 -0.73 -2.33 -2.23 -1.24 -1.65 -1.34 -1.13
KNA56301 (VCV51_030621)
-2.0 2.13 -2.56 -1.76 -3.29 -3.03 -2.96 -3.56 -2.1 -1.09 2.94 1.16 -2.0 2.02 -3.23 -1.0 -0.84 -1.83 -1.86 -2.43 -2.74 -2.48 -1.68
KNA56884 (VCV51_030519)
-0.56 -1.18 -1.54 -0.93 1.39 0.58 1.3 0.77 -0.57 -0.95 -0.05 -0.04 -1.16 -1.34 -0.21 -0.0 0.13 0.48 0.49 -0.51 -0.5 -0.27 -0.38
KNA56891 (VCV51_030526)
-0.24 -2.81 -0.75 -0.6 0.99 0.55 0.77 0.64 -1.07 -0.52 -1.38 -0.45 -1.04 -2.84 -0.68 0.53 0.77 1.28 0.99 -1.09 -1.1 -0.82 0.52
KNA57842 (VCV51_032812)
-0.35 -0.02 -1.49 -0.89 -0.57 -0.83 -0.75 -0.65 -0.17 -0.74 0.45 1.79 -1.02 0.38 -1.69 -0.02 -0.22 0.9 0.98 -0.39 -0.26 -0.13 0.3
KNA57843 (VCV51_032813)
-0.85 0.16 -1.95 -1.22 -0.22 -0.62 -0.82 0.03 0.12 -1.38 0.8 1.88 -2.0 0.73 -2.6 0.1 -0.3 0.61 0.52 -0.09 -0.0 -0.1 -0.22
KNA57844 (VCV51_032814)
-2.22 -0.26 -3.05 -2.96 1.2 0.48 -0.18 1.46 -1.11 -1.87 1.19 2.14 -2.35 0.48 - -0.62 -1.24 -0.08 -0.16 -1.31 -1.01 -1.1 0.1
KNA57845 (VCV51_032815)
-2.41 -1.0 -3.28 -3.11 0.82 0.11 -0.64 1.12 -1.94 -1.85 1.58 2.79 -2.64 -0.42 - -0.1 -0.74 -0.61 -0.68 -2.1 -2.08 -1.99 0.62
KNA57850 (VCV51_032774)
-0.53 -1.48 -1.13 -0.94 -2.53 -2.65 -2.68 -2.87 0.62 -0.74 2.33 0.94 -0.7 -0.18 0.02 1.07 -0.16 -1.99 -2.04 0.33 -0.04 0.61 0.59
KNA57851 (VCV51_032775)
-0.54 -1.25 -1.45 -0.98 -2.46 -2.45 -2.29 -2.57 0.01 -0.82 2.62 1.09 -0.64 -0.21 0.18 1.12 -0.14 -1.22 -1.19 -0.13 -0.29 0.05 0.09
KNA57852 (VCV51_032776)
-0.15 -1.35 -0.61 -0.41 -1.12 -1.13 -1.07 -1.2 0.18 -0.69 1.83 0.72 -0.68 -0.44 -0.52 1.24 0.43 -0.88 -0.77 0.19 0.1 0.18 0.31
KNA58561 (VCV51_032728)
0.64 -1.74 -0.61 -0.24 -0.63 -0.74 -0.86 -0.7 0.44 -0.45 1.43 0.14 -0.74 -1.55 -0.28 0.22 -0.07 -0.46 -0.26 0.12 0.33 1.15 0.41
KNA58617 (VCV51_031094)
- 2.01 - 1.39 - - - - 0.04 - 2.38 2.82 - 0.39 - - - - -0.47 -0.02 - - -
KNA59814 (VCV51_032497)
-1.75 -0.75 -3.27 -2.2 0.36 0.17 0.49 -0.02 -1.47 0.5 -0.01 0.52 0.42 -0.8 2.54 -0.17 0.36 -1.26 -1.02 -1.4 -1.63 -1.68 -0.1
KNA59826 (VCV51_032503)
2.22 - -0.42 1.19 1.15 0.79 0.72 1.33 - -2.46 2.1 - -2.32 - -0.25 - - -0.17 -0.34 - - - -
KNA60692 (VCV51_032131)
0.18 -0.53 -2.26 -0.02 0.01 0.08 0.18 -0.1 -0.11 0.59 0.86 0.08 -0.12 -0.34 0.62 -1.14 -0.81 0.53 0.2 0.04 -0.02 0.15 -0.82
KNA60719 (VCV51_032158)
-0.38 -1.45 -1.06 -0.21 -0.01 -0.16 0.14 -0.29 0.33 -0.99 1.12 0.22 -0.8 -1.51 1.6 -0.96 -0.11 -0.09 -0.05 0.32 0.28 0.23 -0.61
KNA60720 (VCV51_032159)
-1.1 -2.21 -2.21 -1.31 0.0 -0.86 -0.08 -0.22 -1.17 -0.42 2.38 1.35 -0.47 -2.2 1.56 -0.96 -0.37 0.2 0.29 -0.97 -1.3 -1.05 -1.21
KNA60721 (VCV51_032160)
-1.06 -1.8 -1.96 -1.55 0.41 -0.47 0.14 0.09 -0.87 -0.7 2.18 1.15 -0.79 -1.61 1.31 -0.71 -0.12 0.06 0.08 -0.6 -0.93 -0.74 -0.49
KNA60722 (VCV51_032161)
-0.72 -2.62 -1.74 -0.8 0.33 -0.45 0.09 0.04 -0.61 -0.99 2.33 1.26 -1.37 -2.25 1.59 -1.46 -0.85 -0.34 -0.39 -0.69 -0.88 -0.58 -0.36
KNA60835 (VCV51_032025)
-0.31 -2.6 -1.7 -0.45 1.7 1.17 1.36 1.48 0.7 -1.46 -1.56 -0.81 -1.72 -2.43 -0.59 -1.03 -0.22 -1.04 -1.94 0.13 -0.07 0.32 -0.56
KNA60900 (VCV51_031874)
0.01 - 0.79 - 0.75 0.52 1.77 1.04 - -0.86 2.39 - 0.46 - 0.68 - - 0.73 0.11 -2.39 - -12.2 -
KNA60951 (VCV51_031926)
-0.74 -0.65 -1.63 -0.87 1.21 0.38 1.09 1.27 -0.2 -0.76 0.61 -0.3 -1.46 -0.6 1.06 -0.96 -0.45 -0.75 -0.8 -0.2 -0.05 -0.15 -0.56
KNA60978 (VCV51_031953)
-0.64 -2.52 -2.51 -0.86 -1.85 -1.59 -1.66 -2.16 -0.34 0.2 1.97 -0.63 -0.94 -2.73 2.98 -1.96 -1.44 -1.72 -1.54 -0.33 -0.01 -0.17 0.4
KNA60980 (VCV51_031955)
-1.37 -0.85 -2.56 -1.88 -1.54 -1.55 -1.41 -1.71 -0.77 -0.8 2.32 -0.54 -1.57 -0.8 2.57 -1.14 -0.82 0.56 0.71 -0.88 -0.87 -0.66 -0.45
KNA60981 (VCV51_031956)
-0.77 -1.47 -0.07 -1.01 -0.96 -0.72 -0.72 -1.27 -0.86 1.1 1.48 0.22 0.2 -1.53 2.06 -0.69 -0.39 -0.38 -0.37 -0.82 -0.77 -0.51 0.46
KNA60992 (NapF)
0.22 -2.64 -2.3 0.16 -2.12 -1.27 -1.22 -1.77 1.39 -1.78 0.88 0.84 -2.25 -2.46 1.82 -2.53 -2.9 -1.68 -1.62 0.54 1.71 1.34 -1.49
KNA60993 (VCV51_031968)
0.35 -1.06 -2.82 -0.18 -1.68 -1.48 -1.37 -1.72 1.7 -1.9 0.68 0.77 -2.08 -0.88 0.76 -1.53 -1.63 -1.12 -1.19 0.77 1.72 1.5 -2.6
KNA60994 (VCV51_031969)
0.16 -3.08 -2.33 0.03 -1.62 -0.61 -0.87 -1.21 0.88 -1.19 2.31 1.35 -1.86 -3.16 1.16 -0.89 -1.72 -1.47 -1.36 -0.08 0.95 0.46 -1.62
KNA60995 (VCV51_031970)
0.08 -2.48 -2.24 0.23 -1.41 -0.61 -0.77 -0.97 0.43 -1.46 2.71 0.98 -1.66 -2.55 0.98 -1.57 -1.46 -1.24 -1.17 -0.06 0.69 0.28 -2.16
KNA60996 (VCV51_031971)
0.38 -3.45 -1.57 0.8 -1.34 -0.52 -0.76 -1.16 0.45 -1.38 2.2 0.73 -1.93 -3.63 1.24 -0.55 -0.54 -1.21 -1.01 0.15 0.48 0.1 -0.31
KNA61016 (VCV51_031991)
-0.58 - - 0.49 1.89 0.75 -0.08 0.75 - 1.25 2.76 - - - 1.92 - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.