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Heatmap: Cluster_16 (HCCA)

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(Showing raw values)

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Gene
BHI
Basal Medium
CD196,BHI
CD196,Basal Medium
CD196,Log,BHI
ClnR mutant
LB-CD16
Log,BHI
LuxS KO
ND-CD12
ND-CD13
ND-CD17
R20291
R20291,BHI
R20291,Basal Medium
R20291,Heme+
R20291,Log
R20291,Log,BHI
Strain 630
Strain 630,BHI
Strain 630,Basal Medium
Strain 630,Faecal water+
Strain 630,HPUra+
Strain 630,Lag
Strain 630,Log
Strain 630,Log,BHI
Strain 630,Sporulating
TW11
UK1
CCL16953 (spoIVB)
 3.16 1.63 4.02 4.13 3.05 2.09 119.33 1.08 54.25 90.41 76.46 78.57 72.52 1.34 1.58 4.73 24.4 3.66 136.11 0.75 1.71 8.03 91.61 59.4 5.34 0.43 133.87 22.12 58.14
CCL16954 (BN171_1030004)
 29.24 23.45 42.02 40.16 30.72 14.95 159.03 23.55 83.72 36.53 65.21 80.26 99.08 21.51 20.36 29.54 46.31 29.93 193.94 24.03 17.17 106.47 122.92 58.03 22.15 9.28 80.28 39.11 83.36
CCL17792 (BN171_1800015)
 0.39 6.45 0.51 5.19 0.43 0.6 9.06 0.74 17.75 9.43 6.22 5.05 5.12 0.38 5.09 3.54 1.65 0.81 8.32 0.58 7.32 6.73 0.6 1.65 1.28 0.28 2.44 0.0 5.72
CCL17793 (BN171_1800016)
 0.71 14.12 1.14 11.06 0.8 2.93 11.82 1.79 22.07 11.71 9.59 9.04 4.27 0.8 8.73 3.86 3.81 1.29 12.1 1.15 11.93 9.25 1.97 2.24 1.84 1.1 4.32 0.08 5.5
CCL17874 (BN171_1920001)
 0.2 0.17 0.47 1.48 0.73 0.62 2.49 0.07 1.5 2.51 2.23 1.39 2.69 0.12 0.18 2.42 3.01 0.35 3.58 0.45 0.69 0.12 1.68 1.8 1.45 0.42 0.43 0.15 1.24
CCL17875 (BN171_1920002)
 1.48 1.84 2.46 6.35 3.81 1.94 5.64 1.02 2.7 3.21 3.92 3.52 3.85 1.48 2.08 2.87 6.0 1.73 6.33 2.96 3.4 3.88 3.05 2.31 1.84 1.9 1.11 2.73 4.46
CCL17876 (BN171_1920003)
 0.27 0.09 0.86 1.27 0.86 0.97 3.26 0.08 1.55 5.04 2.89 2.83 3.27 0.22 0.25 1.71 2.73 0.27 2.76 0.42 0.81 0.17 1.62 1.04 0.89 0.23 2.01 1.58 2.5
CCL18291 (BN171_220043)
 13.94 14.33 14.63 19.59 8.63 9.55 17.85 9.87 20.19 21.01 24.46 19.19 18.52 16.22 15.32 11.53 12.98 12.1 28.36 14.4 14.27 5.12 19.54 9.21 8.28 4.87 4.85 29.5 17.69
CCL18459 (BN171_2360001)
 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.22 1.68 0.0 0.0 3.54 0.0 0.0 0.0 0.0 0.0 0.0 1.19 3.83 0.0 14.13 15.93 0.0
CCL18504 (rbsR)
 4.28 4.04 11.87 18.7 8.96 4.59 17.99 5.74 60.73 15.03 20.01 17.54 13.9 7.74 10.63 8.73 20.41 9.86 25.32 6.99 10.8 16.52 5.45 3.76 4.92 5.07 15.51 43.83 17.6
CCL18505 (rbsK)
 1.7 1.62 5.7 7.11 6.08 10.71 8.86 2.27 12.72 15.46 15.07 18.31 5.67 2.3 5.32 6.57 8.37 4.48 27.79 4.58 3.93 24.84 3.57 2.58 3.31 3.61 8.72 20.72 13.77
CCL18506 (rbsB)
 1.41 3.43 2.69 3.46 2.17 5.12 36.74 1.69 11.83 29.09 19.69 27.04 8.62 1.41 5.85 6.15 7.58 5.01 31.96 3.58 5.88 52.11 3.3 2.97 2.91 2.15 23.5 23.03 18.91
CCL18507 (rbsA)
 0.25 1.42 0.61 1.43 0.3 0.78 27.82 0.26 2.56 24.15 12.78 17.32 5.64 0.53 2.53 3.49 4.55 1.45 20.37 0.48 2.99 24.8 0.87 0.78 1.06 0.43 17.58 13.3 12.8
CCL18508 (rbsC)
 0.85 4.33 1.25 3.52 1.46 0.39 23.34 1.65 2.48 19.54 10.68 16.14 5.15 0.69 6.99 4.4 4.31 3.54 20.75 0.64 5.06 48.58 3.52 1.04 0.79 0.92 14.24 15.29 9.86
CCL18509 (argE)
 0.67 2.75 0.89 3.38 1.26 0.73 29.0 0.86 1.48 20.63 13.04 16.49 5.33 0.53 4.23 3.7 5.55 2.1 20.72 0.59 4.82 39.39 3.37 1.05 0.76 0.57 18.35 18.03 7.32
CCL18510 (BN171_240015)
 3.05 8.73 3.2 8.98 4.5 2.33 31.09 4.4 2.99 22.46 18.03 25.62 8.64 1.73 9.14 8.82 13.45 6.43 31.13 3.05 10.16 75.33 9.56 2.79 2.74 2.6 39.62 38.8 11.09
CCL18511 (BN171_240016)
 1.01 1.45 1.06 2.93 1.44 0.88 7.36 0.82 0.92 4.09 3.13 3.86 2.94 0.79 1.88 3.41 2.12 1.14 6.2 1.38 1.96 9.49 3.22 1.71 2.71 1.05 5.01 5.21 3.37
CCL18787 (buk)
 78.1 568.87 66.19 917.18 54.44 159.63 1275.4 69.86 380.89 532.57 573.41 540.31 809.06 53.49 272.78 190.4 709.13 101.42 864.15 95.33 1693.62 309.76 431.94 107.02 81.87 63.13 496.49 280.53 520.26
CCL18788 (iorB)
 6.37 166.03 6.21 486.8 4.41 30.17 730.61 5.4 248.52 352.71 334.8 302.03 726.69 8.06 111.32 64.81 482.79 26.18 582.13 8.69 962.94 75.22 305.25 30.91 8.72 4.8 306.15 178.8 334.07
CCL18789 (iorA)
 3.66 111.91 4.6 362.55 3.44 13.86 627.74 3.43 202.22 309.88 292.24 266.21 569.02 6.7 83.7 66.88 370.94 19.27 584.5 7.17 746.73 125.16 250.01 22.83 8.75 3.33 303.34 132.18 263.06
CCL18790 (BN171_2620013)
 4.37 105.63 5.68 315.52 3.49 33.44 712.74 4.71 186.35 366.6 338.7 329.13 546.46 7.67 72.45 78.42 349.44 18.45 676.52 9.36 578.72 84.14 372.69 35.89 13.56 4.25 318.55 146.29 302.02
CCL19060 (BN171_2840008)
 4.22 1.64 3.39 5.61 4.78 0.91 8.79 4.68 2.4 1.17 2.11 1.05 9.51 3.54 1.91 3.52 3.44 4.82 5.64 2.59 4.57 2.3 13.15 0.96 1.06 1.75 21.78 7.74 0.53
CCL19061 (BN171_2840009)
 0.0 0.06 0.12 0.14 0.27 0.37 0.0 0.0 0.27 0.0 0.0 0.0 1.58 0.31 0.08 0.61 0.79 0.0 4.23 2.32 2.9 2.02 12.89 0.53 0.55 1.79 19.44 11.14 0.0
CCL19086 (BN171_2870016)
 22.87 351.71 17.1 282.14 16.53 5.12 526.46 8.65 73.9 375.42 186.95 137.45 169.63 18.19 473.71 23.96 30.54 31.22 285.88 17.79 609.26 27.21 20.5 34.82 60.73 10.5 90.74 150.93 91.65
CCL19138 (thlA)
 0.27 1.65 0.31 2.81 0.31 0.04 2.35 0.16 2.85 0.64 0.16 0.2 0.87 0.07 0.57 1.04 0.27 0.2 0.71 0.08 1.18 0.29 0.41 0.67 0.17 0.1 4.8 1.05 0.0
CCL19139 (scoA)
 0.31 1.43 0.22 2.3 0.0 0.1 2.28 0.0 1.79 0.67 0.23 1.23 0.9 0.03 0.35 1.44 0.36 0.0 0.84 0.09 0.86 0.21 0.3 0.41 0.1 0.0 4.31 2.32 0.22
CCL19140 (scoB)
 0.15 1.25 0.11 2.19 0.28 0.0 2.44 0.03 2.0 1.68 0.48 2.04 1.39 0.03 0.72 1.56 0.3 0.25 0.98 0.12 1.19 0.61 0.16 0.3 0.07 0.03 4.73 2.37 0.66
CCL19141 (bdhA)
 1.2 5.34 1.07 6.02 1.56 0.43 9.33 0.92 5.28 4.34 3.68 2.69 3.54 1.01 3.67 4.31 2.61 1.66 2.54 1.22 4.73 5.62 2.93 2.65 1.47 0.85 7.5 8.71 2.13
CCL19447 (BN171_3150010)
 22.01 79.37 5.01 20.8 7.05 119.06 2136.57 68.54 6.69 955.0 841.88 421.42 15.24 82.9 83.61 7.53 392.74 138.59 785.14 41.44 1026.34 4.85 101.51 30.36 15.16 38.34 95.84 279.54 661.03
CCL19448 (BN171_3150011)
 32.66 157.59 5.52 24.44 6.85 82.46 2114.91 148.62 11.61 785.23 650.87 317.07 16.53 83.53 141.63 8.49 304.72 263.06 989.04 44.62 1158.84 19.16 113.67 35.52 18.16 50.94 140.42 224.08 456.4
CCL19449 (BN171_3150012)
 86.96 511.1 10.71 62.65 18.97 126.11 3461.21 482.18 24.21 778.84 763.37 402.1 19.19 190.41 342.76 10.52 481.45 792.59 1856.25 162.35 2985.14 39.13 157.63 32.48 18.16 178.07 203.36 258.91 677.02
CCL19450 (BN171_3150013)
 38.64 123.77 7.29 28.06 8.41 175.06 2167.14 112.7 11.6 753.41 558.6 254.92 13.66 95.81 116.75 8.59 236.41 312.19 1009.36 36.26 693.92 5.08 127.03 18.66 11.67 34.35 161.33 142.99 360.81
CCL19451 (BN171_3150014)
 12.27 29.5 3.19 12.12 3.51 62.42 2669.64 26.91 8.86 748.72 660.23 302.62 11.95 61.13 32.35 5.12 178.46 91.13 816.48 30.76 629.05 2.91 102.56 15.81 10.54 17.45 254.8 146.72 472.02
CCL19498 (xylA)
 6.88 5.5 10.17 13.47 7.42 3.25 9.32 3.9 2.91 12.97 12.6 10.48 8.93 12.3 10.18 7.32 6.98 5.99 14.95 7.07 4.51 5.87 5.59 5.3 3.61 3.42 10.47 10.03 12.33
CCL19499 (xylB)
 1.89 1.03 2.33 2.31 1.63 1.42 1.8 0.94 0.84 3.72 3.59 2.87 3.15 2.59 2.61 2.81 2.22 1.45 7.13 1.17 1.03 2.2 2.26 1.29 0.81 0.85 1.45 5.4 4.8
CCL19545 (BN171_3250005)
 0.33 3.68 0.45 3.69 0.45 0.4 3.33 0.36 3.98 2.71 1.64 0.58 1.98 0.35 2.62 2.5 1.11 0.41 2.37 0.47 4.63 3.75 0.61 1.05 0.55 0.38 9.01 6.84 0.96
CCL19546 (BN171_3250006)
 1.05 1.54 1.49 2.15 1.37 2.72 5.31 0.66 7.39 3.06 2.9 1.16 3.81 1.1 1.83 3.83 1.46 0.75 2.91 1.83 2.88 1.19 2.01 1.66 1.05 1.05 4.87 2.11 0.85
CCL19563 (BN171_3270001)
 0.94 2.06 1.67 2.65 1.01 1.24 18.87 2.15 5.52 22.09 12.42 7.14 8.13 1.66 2.23 3.81 1.92 2.47 5.84 1.13 1.17 0.93 4.25 3.73 1.99 0.96 9.26 4.91 13.43
CCL19579 (BN171_3270017)
 0.58 2.17 0.4 2.64 0.27 1.93 9.57 0.34 1.71 8.49 7.72 5.87 4.59 0.55 2.11 3.18 1.77 0.49 4.4 0.57 5.58 1.68 2.08 0.7 0.79 0.27 4.16 7.14 5.16
CCL19580 (BN171_3270018)
 0.87 2.46 1.12 7.42 1.9 0.56 6.92 1.33 1.0 3.46 2.88 3.68 4.34 0.74 9.86 3.03 1.64 1.67 6.08 0.67 7.32 6.92 4.42 1.21 0.81 0.57 7.67 7.04 2.29
CCL19581 (BN171_3270019)
 0.54 2.64 1.49 10.5 2.21 0.27 5.26 1.32 0.41 1.56 2.01 3.23 3.94 0.82 13.84 3.05 1.0 2.01 4.04 0.76 9.41 5.76 1.37 1.36 0.6 0.34 7.0 5.15 1.66
CCL19628 (BN171_3320002)
 1.29 7.59 2.13 14.16 1.54 2.85 52.95 0.25 10.19 35.14 26.68 27.16 15.69 1.2 8.9 5.22 6.73 2.03 19.92 1.14 13.29 5.97 6.91 2.22 3.17 0.64 13.41 28.23 17.49
CCL19629 (BN171_3320003)
 40.7 60.84 54.74 102.87 27.22 9.8 96.82 7.63 41.04 59.56 59.39 62.71 38.55 50.95 58.57 20.84 22.88 22.56 73.36 43.91 99.19 8.15 42.28 9.01 22.0 21.96 33.43 118.86 24.99
CCL19848 (BN171_3550001)
 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 4.19 2.98 0.0 18.12 35.6 0.0
CCL20201 (BN171_3790001)
 0.0 0.0 0.0 0.0 0.0 0.06 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.23 0.0 0.0 1.72 0.22 0.8 0.13 0.0 2.38 2.4 0.0
CCL20252 (BN171_390006)
 61.88 111.55 59.15 124.88 21.14 26.0 321.47 16.74 71.9 179.89 135.85 133.25 78.44 43.63 140.12 64.57 55.38 42.1 211.29 59.89 202.42 29.75 73.94 83.32 74.97 16.0 297.59 217.33 112.42
CCL20329 (BN171_4180004)
 0.19 0.1 0.0 0.0 0.0 0.54 0.0 0.0 1.24 1.49 0.0 0.0 1.25 0.0 0.0 0.0 0.37 0.0 1.94 0.22 0.0 0.0 0.52 0.45 0.71 0.0 0.74 0.0 0.0
CCL20339 (BN171_4200001)
 0.0 0.0 0.0 0.0 0.0 0.19 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.06 3.19 5.65 0.0 2.84 9.82 2.12 2.29 16.12 9.52 0.0
CCL20686 (BN171_900006)
 3.82 4.67 5.78 6.78 5.15 9.77 25.39 2.98 6.09 11.52 8.8 9.27 10.39 3.82 5.91 7.91 2.62 4.45 9.66 6.03 5.76 18.71 6.1 4.03 3.87 3.33 10.02 11.11 4.21

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)