Heatmap: Cluster_56 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
H37Rv,WT
H37Rv,T4 20 µM, 12h
HS,Ps1_STM_6_A
N0155,WT,7H9
Lab,Tn6:Rv3869
HS,Cr2_00-R1301
Lab,Mp12_209
H37Rv
HS,Ps1_EMB_6_A
CDC1551,WT
N0155,rpoB Ser450Leu,7H9
HS,Cr3_01-R1422
H37Rv,T10 20 µM, 48h
HS,Ps5_OFXS-1
Lab,Cr7_auxRIF-R2
Lab,Cr8_MC26020
HS,Ps2_EMB_6_B
HS,Ps1_STM_6_B
Lab,Mp8_Rv1049
Lab,Mp3_Rv2989
H37Rv,T4 20 µM, 24h
Lab,Mp9_Rv1963c
HS,Ps1_0_A
H37Rv,DMSO 0.4%, 0h
Lab,Tn9:Rv3214
Lab,Tn7:Rv2196
H37Rv,T4 20 µM, 48h
Lab,Mp4_Rv3334
HS,Ps1_CIP_6_A
HS,Ps2_EMB_6_A
HS,Ps1_ND_3_A
H37Rv,WT,Reaeration
Lab,Tn8:Rv1304
HS,Ps3_CIP_6_A
H37Rv,WT,0% DO
Lab,Tn5:Rv3083c
Lab,Mp2_Rv1152
HSTB
HS,Cr1_01-R0348
Lab,Cr6_auxRIF-R1
H37Rv,Log
HS,Cr4_98-01436
HS,Ps1_INH_3_B
Lab
HS,Ps3_CIP_6_B
HS,Ps3_STM_3_A
Lab,Tn4:Rv3323c
HS,Ps4_HN878
Lab,Tn3:Rv1819c
Lab,H37Rv
HS,Ps3_ND_3_B
HS,H37Rv,WT
HS,Cr5_OFXR-17
HS
Lab,Tn12_Tn209_ref
H37Rv,T10 20 µM, 24h
Lab,Tn10:Rv0758
H37Rv,pH 7.0
HS,Ps3_EMB_3_B
H37Rv,mycP1-eccE1 KO
CCP45632 (echA16)
-1.65 -0.32 0.23 0.3 0.07 -0.12 -0.64 -0.37 0.26 -0.53 0.14 -0.17 0.08 0.32 -0.83 -0.7 0.28 0.34 0.27 0.63 -0.42 0.01 0.27 -0.02 -0.2 0.24 -0.7 -0.28 0.15 0.34 -0.2 0.6 0.3 0.42 0.93 -0.22 0.79 -0.55 -0.6 -0.67 -0.04 0.06 0.28 0.07 0.31 0.29 -0.42 0.17 -0.21 0.05 0.13 -0.56 -0.49 -0.3 0.25 0.02 -0.04 -1.02 0.18 -0.63
CCP45633 (ugpC)
-1.34 -0.72 1.23 2.06 -0.06 -0.09 -0.3 -1.0 -0.21 -1.36 1.92 -0.25 -0.44 0.0 -0.48 -0.48 0.23 1.38 0.02 0.1 -0.78 -0.15 0.27 -0.51 -0.47 -0.19 -1.19 -0.27 -0.48 0.13 -0.02 -0.01 0.35 -0.54 0.35 -0.35 0.64 -0.75 -0.35 -0.6 -0.56 -0.23 -0.11 -0.72 -0.49 0.76 -0.4 0.03 -0.2 -0.08 -0.07 -1.61 -0.07 -0.51 -0.08 -0.46 -0.38 -0.89 -0.07 -0.48

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.