Heatmap: Cluster_13 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
GCGS0457,reduced ceftriaxone suscept
FA1090/H041,60min+PMN
FA1090,L-log,from bact
GCGS1095,reduced ceftriaxone suscept
from N. gon mtr mut mosiac transformant
WT,from L-log cell cultures
from lab,SP319,reduced ceftriaxone suscept
FA1090/H041,0min+PMN
from lab,SP316,reduced ceftriaxone suscept
FA1090cpxR::erm,L-log,from bact
FA1090 GCM77,strain+mut,untreated
GCGS1014,reduced ceftriaxone suscept
from urethra,test for azithromycin resist
FA1090/H041,60min
WT parent,FA19 WT,from p-log cells
WT,FA19,from p-L-log cells
overexp mtrCDE,FA19,from p-L-log cells
FA1090 GCM77,strain+mut,H2O2
FA1090cpxA::kan,L-log,from bact
from p-cells
AKP14206 (WX61_00117)
- 2.7 - - - - - 3.3 - - - - - 1.86 - - - - - -
AKP14295 (WX61_00206)
-1.98 -0.09 -2.39 -0.04 0.09 1.33 -1.55 1.47 -2.26 -4.73 -3.65 -0.16 0.6 -0.94 1.08 1.09 1.63 -3.68 -2.83 -2.7
AKP14303 (dnaC_1)
0.74 -0.28 -2.17 1.24 - 0.43 0.03 -0.38 0.41 -3.35 -2.11 0.94 1.28 0.11 -1.38 -0.56 1.24 -1.5 -2.77 -0.36
AKP14304 (WX61_00215)
1.44 0.13 -1.29 1.14 - -0.7 0.34 -0.09 0.86 -2.03 -2.53 0.63 1.33 0.48 -2.12 -0.82 -0.53 -1.69 -1.45 -0.16
AKP14329 (WX61_00241)
- -0.43 - - -18.59 -0.66 -22.05 1.21 - - -15.63 -14.63 2.71 0.66 0.58 -0.29 -1.51 -18.65 - 2.47
AKP14389 (WX61_00305)
-0.02 0.53 - 0.71 -22.84 -1.68 0.39 2.17 1.44 - - -2.97 -2.24 0.9 2.09 -1.69 -1.66 -9.22 - -
AKP14427 (oprM)
-0.15 -0.51 -3.96 -0.24 0.1 1.01 -0.05 1.04 -0.24 -3.8 -0.66 -0.33 -0.04 0.2 -0.7 -0.36 1.95 -0.72 -3.6 -0.04
AKP14428 (mexB)
0.05 -0.63 -3.79 -0.06 -0.92 1.3 0.13 0.8 -0.03 -3.46 -1.26 -0.18 -1.68 -0.1 -0.85 -0.29 2.3 -1.19 -3.41 0.04
AKP14429 (mexA)
-0.11 -1.57 -2.62 -0.21 0.24 1.46 -0.25 -0.23 -0.37 -2.34 -2.18 -0.65 -0.12 -0.65 -0.57 -0.15 2.47 -2.21 -2.35 0.22
AKP14433 (recC)
-0.5 -0.02 -1.76 0.29 -0.46 0.75 -0.13 0.52 -0.08 -2.16 -0.74 0.27 1.16 -0.36 0.22 0.79 0.68 -0.73 -1.94 -0.56
AKP14490 (nqrD)
-0.49 0.72 -2.37 -0.15 0.31 0.26 -0.39 0.76 -0.67 -0.76 0.07 -0.14 0.94 0.13 0.02 0.1 0.47 -0.42 -2.14 0.0
AKP14491 (nqrE)
-0.36 0.81 -2.49 0.08 0.49 0.29 -0.25 0.87 -0.26 -0.74 -0.31 0.23 -0.11 0.18 0.37 0.19 0.42 -0.76 -2.23 -0.15
AKP14492 (nqrF)
-0.64 0.51 -2.62 -0.16 0.15 0.65 -0.51 0.51 -0.79 -0.35 0.45 -0.05 -0.49 0.09 0.23 0.39 0.97 -0.12 -2.4 0.06
AKP14582 (piiC_4)
0.5 1.01 -8.58 -8.14 -10.48 -4.72 -1.32 1.86 -1.0 -10.67 0.23 -9.33 2.92 1.0 -3.21 -4.49 -5.16 0.1 -8.9 -6.43
AKP14625 (piiC_5)
1.01 -0.66 -5.84 0.01 0.69 -1.39 0.04 0.55 0.43 -6.69 0.77 0.28 1.67 -1.8 -0.75 -1.42 -1.36 0.57 -5.93 0.31
AKP14699 (WX61_00621)
- -0.45 -2.18 1.39 -3.15 -2.4 -10.27 0.6 - -4.28 -4.34 1.13 2.83 0.85 -2.47 -2.33 -2.51 -4.22 -2.67 1.41
AKP14706 (WX61_00628)
1.44 0.13 -1.29 1.14 - -0.7 0.34 -0.09 0.86 -2.03 -2.53 0.63 1.33 0.48 -2.12 -0.82 -0.53 -1.69 -1.45 -0.16
AKP14707 (dnaC_2)
0.74 -0.28 -2.17 1.24 - 0.43 0.03 -0.38 0.41 -3.35 -2.11 0.94 1.28 0.11 -1.38 -0.56 1.24 -1.5 -2.77 -0.36
AKP14760 (WX61_00687)
-5.04 0.66 -9.91 -4.84 1.51 -0.15 -22.42 1.71 - -9.99 -1.88 -3.62 1.69 1.33 0.91 -0.23 -0.03 -1.32 -10.5 0.17
AKP14911 (WX61_00844)
-0.3 0.41 -1.26 -0.2 0.4 0.1 -0.14 0.25 -0.44 0.02 -0.56 -0.59 1.05 0.13 -0.23 0.06 0.17 -0.48 -1.53 0.8
AKP14912 (efeB)
-1.1 0.45 -2.88 0.05 0.43 0.3 -0.18 0.8 0.15 -2.63 -1.72 0.05 1.43 0.34 0.85 0.37 0.19 -1.43 -3.04 -1.0
AKP14913 (WX61_00846)
-0.61 0.08 -2.62 0.62 0.23 0.07 0.51 0.67 0.46 -3.13 -0.65 -0.11 1.2 -0.15 0.58 0.06 0.09 -0.06 -2.87 -1.37
AKP15078 (WX61_01020)
- 1.69 - - - - - 3.46 - - - - - 2.53 - - - - - -
AKP15081 (WX61_01023)
- 1.19 - - - - - 3.81 - - - - - 1.9 - - - - - -
AKP15218 (ubiG)
0.25 -0.08 -1.92 0.28 -1.37 0.03 0.05 -0.15 0.06 -2.15 -1.39 0.17 1.99 0.13 -0.49 0.07 -0.03 -1.15 -1.72 0.76
AKP15219 (thrB)
-0.2 0.25 -0.97 0.37 -0.58 0.13 0.03 0.17 -0.23 -1.18 -1.19 0.07 1.37 0.56 -0.03 0.23 -0.02 -1.16 -0.77 0.27
AKP15224 (mtcA1)
0.23 -0.06 -0.78 0.3 -0.23 0.21 0.16 -0.14 0.13 -1.22 -0.43 0.34 1.06 0.16 0.17 0.21 0.21 -0.35 -0.9 -0.91
AKP15233 (yusV)
-0.97 0.46 -1.32 0.94 -0.9 0.22 -0.11 0.14 -0.51 -1.94 -0.22 0.37 1.29 0.52 -0.26 0.16 0.31 -0.15 -1.6 -0.61
AKP15235 (yfhA)
-0.85 0.85 -2.67 0.65 -1.11 -0.77 0.32 0.67 0.42 -3.35 -1.54 0.47 2.41 0.16 -0.89 -0.81 -0.73 -1.33 -2.54 -2.82
AKP15236 (feuB)
-0.45 0.98 -0.59 0.82 -0.96 -1.16 0.33 0.93 0.27 -2.01 -1.58 0.39 1.93 0.6 -0.67 -1.14 -1.19 -1.72 -1.36 -3.13
AKP15237 (yclQ_1)
-0.28 0.6 -3.26 0.76 -0.46 -0.76 0.56 0.56 0.29 -2.87 -2.31 0.51 1.97 1.12 -0.62 -0.87 -0.61 -1.63 -3.75 -1.88
AKP15238 (hxuC)
-0.17 1.21 -3.12 1.41 -0.73 -2.19 0.87 -0.35 1.15 -2.55 -2.09 1.26 -0.12 1.27 -0.49 -2.11 -2.32 -0.35 -3.74 -2.1
AKP15253 (lbpA_1)
0.82 0.44 -2.46 0.64 -0.59 -0.94 1.16 0.05 1.29 -2.88 -1.8 0.86 1.1 0.49 -0.7 -0.73 -1.32 -1.24 -2.47 -2.15
AKP15254 (WX61_01205)
0.57 -0.09 -1.12 1.04 0.1 -1.23 1.14 -0.16 0.85 -1.52 -2.41 0.59 0.82 0.06 0.39 -1.19 -1.3 0.02 -1.27 -2.07
AKP15357 (WX61_01309)
-0.02 0.53 - 0.71 -22.84 -1.68 0.39 2.17 1.44 - - -2.97 -2.24 0.9 2.09 -1.69 -1.66 -9.22 - -
AKP15384 (piiC_9)
1.66 0.23 -11.4 0.6 -1.13 -6.75 1.31 0.58 1.39 -12.86 -9.19 0.37 1.87 0.26 - -7.03 -6.41 -8.68 -11.05 -0.13
AKP15627 (WX61_01589)
-0.02 0.53 - 0.71 -22.84 -1.68 0.39 2.17 1.44 - - -2.97 -2.24 0.9 2.09 -1.69 -1.66 -9.22 - -
AKP15857 (WX61_01827)
1.44 0.13 -1.29 1.14 - -0.7 0.34 -0.09 0.86 -2.03 -2.53 0.63 1.33 0.48 -2.12 -0.82 -0.53 -1.69 -1.45 -0.16
AKP15858 (dnaC_3)
0.74 -0.28 -2.17 1.24 - 0.43 0.03 -0.38 0.41 -3.35 -2.11 0.94 1.28 0.11 -1.38 -0.56 1.24 -1.5 -2.77 -0.36
AKP15888 (piiC_11)
1.32 -0.31 -7.02 -0.3 1.04 -0.64 0.54 0.71 0.53 -8.6 -0.42 -0.27 2.04 -1.42 -1.58 -0.68 -0.59 -0.53 -7.39 -1.88
AKP15900 (WX61_01870)
- 2.14 - - - - - 3.52 - - - - - 2.05 - - - - - -
AKP15931 (WX61_01901)
0.13 0.3 -3.42 1.56 -0.51 -1.22 1.14 1.27 1.08 -5.21 -2.45 1.41 0.26 -0.01 -1.46 -1.36 -1.02 -2.64 -3.14 -2.53
AKP15932 (WX61_01902)
- 2.22 - - - -2.71 - 3.24 - - - - - 1.94 - - -1.38 - - 0.6
AKP15936 (WX61_01906)
-0.51 0.6 -5.26 0.52 0.55 0.71 0.63 0.78 0.1 -6.18 -6.29 0.17 1.38 -0.22 -0.13 0.93 0.3 -7.47 -6.61 -2.26
AKP16193 (WX61_02169)
-0.44 0.52 - -0.2 0.82 -0.64 0.1 1.18 0.58 - -0.48 0.31 1.12 0.27 0.12 -0.48 -0.9 -0.22 - 0.22
AKP16222 (WX61_02198)
- - - - - 1.26 - 3.09 - - - - - 2.36 - 2.0 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.