Heatmap: Cluster_57 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
AES-1R,ASMDM+
AG1,ciproflaxin
D+7bld
DK2
E01
LB
LB,log
LB,untreated
PA1201
PA14
PA14,0.25xMIC G3KL
PA14,0.25xMIC T7
PA14,0.25xMIC polymyxin-B
PA14,LB
PA14,LB,log
PA14,WT
PA14,ciproflaxin
PA14,cmrA+
PA14,late stat,NaPyruvate+Arabinose
PA14,late stat,untreated
PA14,sutA-KO,late stat,NaPyruvate+Arabinose
PA14,untreated
PA212
PA2596
PA558
PA580
PAK,LB
PAK,WT
PAK,WT,LB
PAK,pilR
PAK,pmrB6,LB
PAO1
PAO1,0.56mg/mL farnesol
PAO1,ABTGC
PAO1,DDS
PAO1,GUN,LB,glucose
PAO1,HapZ,early stat
PAO1,LB
PAO1,LB,glucose
PAO1,LB,untreated
PAO1,M9-CA,early stat
PAO1,M9-CA,log
PAO1,RsmN+
PAO1,SagS,early stat
PAO1,WT
PAO1,WT,BHI
PAO1,WT,LB
PAO1,WT,MOPS acetate
PAO1,WT,MOPS glycerol
PAO1,early stat
PAO1,ersA,BHI
PAO1,lasR rhlR,M9-CA,early stat
PAO1,lasR rhlR,M9-CA,log
PAO1,liquid culture
PAO1,mexZ,LB
PAO1,oxylipin-
PAO1,pBAD-yhjH
PAO1,pUCP18::msr(E)
PAO1,qslA,M9-CA,early stat
PAO1,qslA,M9-CA,log
PAO1,qteE,M9-CA,early stat
PAO1,qteE,M9-CA,log
PAO1,untreated
PAO1,wspFpelApslBCD,LB
PAO1,wspFpelApslBCD,LB,untreated
Y31,LB
Y71,LB
Y82,LB
Y89,LB
ciproflaxin
liquid culture
m pheno
mexT
nirS
pHerdB20T-gp68
untreated
- 3.67 4.86 - - - - - - - - - -3.96 - - - - - - - - - - 3.62 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.89 - 3.86 - - - - - -
- 2.72 5.4 - - - - - - - - - - -5.62 - - - - - - - - - 3.89 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.3 - 2.88 - - - - - -
1.08 -1.28 - 0.92 1.26 -1.6 0.53 -2.39 -0.79 0.64 0.78 0.7 0.81 0.33 -0.3 0.07 -0.06 0.17 -0.65 -0.26 -0.33 0.62 -0.3 -0.31 -0.3 0.18 -1.91 -1.98 -3.5 -4.91 -1.44 0.15 0.97 -1.52 -0.54 -0.24 -0.13 0.86 -1.1 -1.16 1.49 0.1 -1.11 -0.25 0.5 -0.28 -0.41 -2.54 -0.99 -0.02 -0.44 0.99 0.11 -1.5 -0.67 0.26 -0.19 -1.01 1.66 0.35 1.52 0.34 -0.83 -0.96 -0.87 -0.7 -1.18 0.49 -2.25 2.02 -1.74 -2.91 0.28 -0.18 -0.26 -1.52
CRO09715 (bfd)
-0.69 -3.06 -2.65 0.08 0.74 -2.63 -0.4 -2.72 0.85 -1.29 -1.24 -1.22 -1.5 -1.34 -0.62 -2.9 -4.98 -1.5 0.79 -2.65 0.21 -0.64 0.95 0.29 -0.2 -0.33 -1.82 0.03 -2.76 0.69 -0.52 0.37 -3.39 0.11 1.3 -0.51 -3.04 -0.06 -1.44 -2.26 2.19 0.24 -0.11 -3.62 -1.61 -2.78 -1.58 -4.57 -4.65 -2.85 -2.25 2.91 0.51 -1.81 -1.12 1.54 -4.34 1.16 1.2 -0.65 2.2 -0.74 0.57 2.52 2.11 -1.63 -1.89 -2.56 -2.27 1.04 -2.6 -2.72 -1.25 -4.36 -1.8 -2.91
- 4.64 4.6 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -10.6 - - - - - - - - - - - - - - - - - - - - - - - - - - - -4.3 -5.38 4.21 - 2.3 1.71 - - - - -
CRO34678 (crp_1)
-0.69 -0.44 -0.13 1.3 1.78 0.84 -0.04 -0.31 -0.63 -0.2 0.53 0.44 0.2 -0.06 -0.15 -0.32 1.09 -1.46 0.28 0.36 0.26 0.08 -0.44 -0.68 0.73 0.49 -1.47 -0.01 -0.44 -0.68 -1.21 0.08 0.78 -0.38 -0.67 -0.04 0.37 -1.51 -0.75 -0.73 -1.99 -4.09 0.62 0.25 -0.65 0.29 -2.34 0.22 0.93 0.27 0.28 -2.35 -3.3 0.21 -2.0 -1.39 0.06 -0.34 -1.86 -3.08 -1.99 -3.53 -0.81 -0.8 -0.47 1.04 1.12 0.03 0.47 1.01 0.46 -0.33 -1.16 0.35 1.5 -0.2
CRO52404 (yedY_2)
-0.27 -1.09 -0.42 -0.12 1.73 0.46 -1.35 -1.14 -1.48 -0.05 -0.56 -0.4 -0.33 -0.42 -2.1 0.39 -1.48 -1.37 -0.65 0.95 -0.39 -1.02 -0.82 -1.21 0.37 0.57 -1.01 -0.55 -1.4 -0.33 -0.56 0.17 -0.16 -0.13 0.41 0.08 -1.29 -0.92 -0.48 -0.52 0.37 2.11 -1.28 -2.11 -0.5 0.44 -0.34 -1.39 -0.65 -1.49 0.36 0.13 1.93 -0.96 -0.36 -5.53 0.12 -1.81 -0.42 2.02 0.06 2.0 -1.75 -1.55 -1.52 0.34 1.0 0.46 0.43 -1.03 -0.59 -0.9 -1.5 0.49 1.47 -2.31
-0.21 -1.53 -1.73 -1.48 3.94 0.79 0.26 -0.22 -1.28 0.76 -1.33 -1.37 -1.73 0.96 -0.66 -0.47 -1.4 -2.13 -1.05 0.29 -0.65 -1.45 -0.69 -0.61 -0.22 -0.11 -1.58 0.4 -1.76 -1.06 -1.06 0.37 -0.91 -0.19 -0.76 1.47 -3.16 -1.75 1.02 0.96 -2.0 -2.8 -1.94 -3.25 -1.25 0.73 0.12 -2.26 -1.42 -2.25 -0.16 -1.79 -3.26 -1.15 0.08 -4.33 -0.07 -2.38 -2.65 -1.99 -1.45 -1.98 -2.57 -2.97 -2.36 -0.95 1.17 0.35 -0.64 -1.22 -0.36 0.2 -2.1 -1.59 3.42 -1.86
1.42 -1.55 -0.72 0.15 3.88 -0.02 -1.09 -0.22 -0.53 0.94 -1.15 -1.11 -0.88 -0.15 -1.59 -0.04 -1.53 -2.07 -0.72 -0.08 -0.66 -1.05 -1.1 0.23 -0.19 0.3 -1.18 0.61 -1.37 0.71 -0.96 1.69 -1.09 1.32 -1.76 -0.34 -1.93 -2.22 -1.71 -1.17 -2.13 -2.94 -1.4 -2.03 -0.08 1.02 -1.34 -1.38 -0.78 -1.9 -0.07 -2.16 -3.4 -0.95 -1.11 -4.06 -0.15 -2.22 -1.79 -2.43 -2.64 -2.95 -2.43 -2.16 -2.0 -1.51 1.27 0.25 -0.12 -0.34 -1.36 -0.68 -1.58 -0.03 3.19 -1.12
- 3.42 3.56 - - - 0.17 - - 0.22 0.21 -0.01 0.19 -0.39 1.69 -0.51 -3.86 -3.55 -0.18 0.05 0.38 -0.34 - -0.78 -6.08 2.25 - - - - - -0.75 - - - - - -9.25 - - - - - - - - - - - - - - - - - - - - - - - - - - -6.52 1.88 -5.03 4.63 -5.56 0.07 -9.32 -6.85 -3.71 1.81 - -
CRO63513 (hin_2)
- 3.19 4.53 - - - 0.21 - - -6.83 - -4.59 - - - - - - - - -4.62 -6.04 -4.61 - - 3.29 - - - - - -1.1 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.33 - 4.44 -4.83 0.14 - - - 2.12 - -
-0.21 -0.93 -0.51 -0.53 1.91 0.17 -1.19 -1.68 0.35 0.28 0.78 0.79 0.79 -0.37 -0.99 1.21 0.06 -0.69 0.03 -0.26 0.31 0.73 -1.21 -0.2 0.64 -0.75 -1.3 -0.45 -1.04 -1.01 -1.27 -0.5 -0.25 0.33 -1.18 -1.13 -1.46 -0.14 -1.67 -1.01 0.69 0.22 -0.63 -1.74 -0.41 0.04 -1.83 -0.04 -0.16 -1.45 0.13 0.44 0.19 -0.28 -1.68 -3.81 -0.11 0.09 1.7 0.07 0.94 0.69 -0.22 -1.25 -1.21 0.77 0.95 0.56 0.92 0.99 -1.11 -0.4 -0.58 -0.56 0.97 -1.78
- 4.53 5.41 - - - - - - - - - - -9.11 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.23 2.51 - - - - -
- 3.93 5.3 - - - - - - - - - - -8.05 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.55 3.27 - - - - -
- 4.55 4.98 - - - - - - - - - - -8.09 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.55 3.2 - - - - -
- 3.49 5.4 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.72 3.23 - - - - -
- 2.35 5.33 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.33 3.4 - - - - -
- 1.91 5.43 - - - - - - - - - - - - - - - - - - - - 0.47 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.07 3.47 - - - - -
- 4.57 5.43 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.68 1.47 - - - - -
- 5.02 4.87 - - -1.99 - - - - - - - - - - - - - - - - -3.67 - - - - - - - - -6.21 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.15 2.34 - - - - -
CRO99172 (hsdR_2)
- 4.48 4.89 - - - - - - - - - - - - - - - - - - - - - - - -8.2 - - - - -11.44 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -8.8 3.97 3.08 - - - - -
- 4.38 5.13 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.52 3.14 - - - - -
- 4.65 4.82 - - - -8.88 - - -10.66 - - - -6.98 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -8.02 - - - - - - - - - - - - - - - 3.65 3.33 - - - - -
- 4.58 5.22 - - - - - - - - - - -6.87 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.99 2.79 - - - - -
- 4.29 5.21 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.44 3.1 - - - - -
- 4.24 5.36 - - - - - - - - - - -7.11 - - - - - - - - - - - - - - - - - -13.81 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 3.41 2.47 - - - - -
- 4.6 5.32 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -11.51 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.88 2.2 - - - - -
- 4.29 5.39 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -12.39 - - - - - - - - - - - - - - - - - - - - - -8.67 - - - - - - - - - - - - - - - 2.97 2.7 - - - - -
- 4.56 5.19 - - - - - - - - - - -8.46 - - - - - - - - - - - - - - - - - -12.18 - - - - - - - - - - - - - - - - - - - - - -9.1 - - - - - - - - - - - -7.9 - 1.45 - 2.99 2.41 - - - - -
-0.89 -0.48 -0.15 -0.01 1.33 -0.72 -1.52 -0.54 -1.06 0.99 -0.79 -0.91 -0.94 -1.1 -1.86 -0.85 -3.6 -1.37 -0.1 0.75 0.01 -1.23 -1.12 -0.01 -0.09 0.04 -2.82 -2.47 -2.07 -1.52 -2.02 0.43 -1.13 0.88 0.15 0.17 -0.55 -1.04 -1.7 -1.82 -0.23 -1.7 -0.77 -0.51 4.36 1.01 -0.58 0.1 -0.07 -0.61 1.1 -0.18 -1.22 -1.59 -0.23 - -1.12 -1.03 -0.75 -1.05 -0.27 -0.68 -0.73 -1.3 -0.82 -1.21 -0.05 -1.0 -1.17 0.2 -1.87 -0.48 -1.17 -0.49 1.12 -0.54
0.82 0.18 0.43 -0.43 1.0 0.7 0.11 -0.48 -1.13 -0.02 0.29 0.09 -0.16 0.2 -0.26 0.56 1.01 -1.08 0.46 0.74 0.37 -0.28 -0.72 -1.27 1.19 1.1 -1.55 0.24 -0.16 -0.25 -0.43 0.16 1.83 -0.44 -0.25 -0.96 -0.76 -0.39 -0.45 -0.74 -0.94 -1.79 -0.97 -0.81 -0.61 0.35 -2.72 0.32 1.08 -0.5 -0.39 -1.1 -1.91 0.57 -1.51 -4.1 0.01 -1.2 -1.27 -2.04 -1.35 -1.94 -0.8 -1.95 -2.39 0.51 0.52 0.08 0.35 1.28 -0.02 -0.28 -0.94 1.38 1.38 -0.73
- 2.83 4.49 - - - - 3.79 - - - - - - - - - - - - - - - 3.5 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.71 - 0.94 - - - - - 3.68
- 3.77 3.95 - - - - 3.61 - - - - - - - - - - - - - - - 3.64 -0.59 -6.52 - - - - - - - - - - - - - - - - - - - - - - - - - - - -7.2 - - - - - - - - - - - 0.83 -5.27 3.25 -6.22 1.31 - -4.35 - -0.85 - 2.83
CRP29986 (syrM1_1)
- 3.66 3.81 - - - - 3.92 - - - - - - - - - - - - - - - 2.73 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -8.02 - 3.23 - 1.94 - - - - - 3.84
- 3.36 2.95 - - - - 3.85 - - - - - -8.64 - - - - - - - - - 4.51 - - - - - - - - - - - - - -13.12 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2.46 -8.85 2.22 - - - - - 3.41
-0.84 -2.21 0.08 0.64 2.07 1.23 -0.04 -1.84 -1.14 -0.45 -0.59 -0.68 -0.74 -0.32 -0.59 -0.47 0.99 -0.96 -1.4 -0.64 -0.78 -0.77 -0.6 -1.89 0.06 1.22 -2.81 -0.01 -1.25 -0.39 -2.33 0.21 0.23 0.34 -0.77 -0.48 -1.27 -0.38 -0.6 -0.71 1.14 -0.35 -0.36 -1.15 0.07 -0.32 -0.41 0.77 1.46 -1.22 -0.41 0.94 -0.25 1.17 -0.27 -3.22 1.25 -1.28 0.97 -0.51 0.61 -0.31 -0.98 -2.41 -2.23 0.45 0.62 0.56 0.63 0.94 -0.11 -0.93 -1.18 -3.17 1.73 -1.3
CRP54624 (dmlR_31)
-1.01 -1.93 -0.86 0.2 3.21 0.2 -0.48 -2.6 -1.97 0.22 -0.47 -0.46 -0.81 -0.64 0.31 0.24 -0.55 0.2 -0.5 -0.67 -0.02 -0.8 -1.0 -2.02 0.85 1.4 -2.09 0.04 -1.15 -0.13 -1.55 0.06 -1.21 -0.78 -0.88 -0.87 -1.23 -1.67 -0.99 -0.53 -0.51 -0.27 -0.68 -1.65 -1.26 -0.08 -2.52 -0.43 0.63 -1.49 -0.42 -1.19 -0.05 0.09 -2.03 -4.38 0.82 -1.74 -0.62 -0.43 -0.76 0.0 -1.6 -2.39 -3.29 -0.39 1.64 0.07 0.81 2.4 -0.29 -0.24 0.22 -1.27 2.72 -2.42
CRP56194 (intS_4)
- 2.31 4.15 - - - - -0.51 - -11.85 - - - - - -6.94 - - - - - - - 4.66 2.67 1.03 - - - - - -2.63 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -1.41 -7.5 3.1 - 2.34 -9.41 - - 1.78 - 0.22
- 4.49 4.65 - - - - -2.77 - - - - - - - - - - - - - - - 3.73 - -1.7 - - - - - -4.49 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -0.95 - 3.25 - 2.13 - - - - - -2.13
- 5.11 4.42 - - - - - - - - - - -7.97 - - - - - - - - - 3.34 - - - - - - - - - - - - - -12.08 - - - - - - - - - - - - - - - - - - - - - - - - - - - -6.78 - 3.23 - -0.69 - - - - - -
CRP56304 (parB_3)
- 4.19 3.08 - - - -2.45 0.58 - -10.93 - - - -7.47 - - - - - - - - - 5.15 -2.13 -0.76 - - - - - -4.08 - - - - - - - - - - - - - - - - - - - - - - - - -7.66 - - - - - - - - -1.42 1.19 1.58 -0.1 -0.03 -3.68 -4.39 - -3.0 1.52 -0.77
- 2.67 3.76 - - - - 2.24 - - - - - - - - - - - - - - - 4.6 2.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 4.14 - 0.43 - -1.85 - - - -
- 1.25 1.63 - - - - - - 2.1 2.12 2.02 1.92 3.81 2.22 1.59 1.06 0.58 1.0 2.17 1.21 1.72 - 0.89 2.4 -4.65 - - - - - -9.31 - - - - - - - - - - - - - - -2.81 - - - - - - - - - - - - - - - - - - - - 2.42 - 0.41 -2.04 -0.82 0.83 - - -
- 2.14 2.12 - - -10.64 -11.79 - - 1.62 2.49 2.43 2.53 3.13 1.59 1.51 1.76 0.28 1.48 2.25 1.59 2.04 - 1.05 1.57 -6.19 - - - - - -11.67 - - - - - -13.92 - - - - - - - - -3.54 - - - - - - - -4.91 - - - - - - - - -9.68 -7.88 -8.04 - 2.03 -9.68 0.96 -2.36 -0.73 0.5 - - -
- 1.74 2.07 - - -8.28 -11.5 - - 1.42 2.77 2.65 2.48 3.67 1.96 1.33 1.36 0.57 0.99 1.97 1.53 2.28 - 0.42 0.27 -7.72 - - - - - -13.76 - - - - - -12.62 - - - - - - - - -2.81 - - - - - - - -4.75 - - - - - - - - -9.79 -11.5 -9.33 -10.41 2.1 -10.35 -0.05 -2.31 -0.68 0.56 - - -
CRP68290 (blm)
- 3.91 5.93 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -9.94 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.