Heatmap: Cluster_111 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
AES-1R,ASMDM+
AG1,ciproflaxin
D+7bld
DK2
E01
LB
LB,log
LB,untreated
PA1201
PA14
PA14,0.25xMIC G3KL
PA14,0.25xMIC T7
PA14,0.25xMIC polymyxin-B
PA14,LB
PA14,LB,log
PA14,WT
PA14,ciproflaxin
PA14,cmrA+
PA14,late stat,NaPyruvate+Arabinose
PA14,late stat,untreated
PA14,sutA-KO,late stat,NaPyruvate+Arabinose
PA14,untreated
PA212
PA2596
PA558
PA580
PAK,LB
PAK,WT
PAK,WT,LB
PAK,pilR
PAK,pmrB6,LB
PAO1
PAO1,0.56mg/mL farnesol
PAO1,ABTGC
PAO1,DDS
PAO1,GUN,LB,glucose
PAO1,HapZ,early stat
PAO1,LB
PAO1,LB,glucose
PAO1,LB,untreated
PAO1,M9-CA,early stat
PAO1,M9-CA,log
PAO1,RsmN+
PAO1,SagS,early stat
PAO1,WT
PAO1,WT,BHI
PAO1,WT,LB
PAO1,WT,MOPS acetate
PAO1,WT,MOPS glycerol
PAO1,early stat
PAO1,ersA,BHI
PAO1,lasR rhlR,M9-CA,early stat
PAO1,lasR rhlR,M9-CA,log
PAO1,liquid culture
PAO1,mexZ,LB
PAO1,oxylipin-
PAO1,pBAD-yhjH
PAO1,pUCP18::msr(E)
PAO1,qslA,M9-CA,early stat
PAO1,qslA,M9-CA,log
PAO1,qteE,M9-CA,early stat
PAO1,qteE,M9-CA,log
PAO1,untreated
PAO1,wspFpelApslBCD,LB
PAO1,wspFpelApslBCD,LB,untreated
Y31,LB
Y71,LB
Y82,LB
Y89,LB
ciproflaxin
liquid culture
m pheno
mexT
nirS
pHerdB20T-gp68
untreated
-0.94 -0.59 -0.36 0.59 1.91 -0.03 -0.99 -0.63 -0.74 -0.33 0.18 0.13 -0.01 -0.24 -0.87 -0.35 0.34 -0.67 -0.41 -0.02 -0.08 -0.01 -1.67 -0.96 0.12 1.4 -0.82 -0.68 0.05 -0.83 -0.7 0.47 0.35 0.21 -1.19 -1.06 0.15 0.16 -1.54 -1.09 0.89 0.23 -0.45 -0.24 -0.31 0.22 -0.47 -0.43 0.52 0.33 0.26 0.22 0.25 0.62 -0.27 -3.65 1.03 -0.07 0.65 0.31 0.4 0.39 -0.51 -1.35 -1.55 0.47 0.08 0.68 0.1 0.53 -0.59 -0.56 -0.71 -1.75 1.45 -1.25
-0.47 -0.19 -0.94 0.09 1.62 0.26 0.0 -0.31 -1.29 -0.01 -0.62 -0.5 -0.57 0.2 0.09 -0.39 1.22 0.33 -0.86 0.08 -0.38 -0.47 -1.52 -1.65 -0.42 0.41 -0.2 -0.59 0.02 -1.1 -0.05 0.24 0.04 -0.08 -1.52 0.09 -0.39 -0.32 -0.07 -0.21 -0.06 -0.06 -1.14 -0.77 -0.64 0.14 -0.03 -0.49 0.31 -0.44 -0.07 -0.3 -0.17 0.69 0.19 -3.26 1.08 -0.56 -0.12 -0.2 -0.44 -0.18 -0.52 -0.97 -1.66 0.67 1.14 1.21 1.02 1.05 0.29 -0.84 0.19 -1.02 1.48 -0.1

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.