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Heatmap: Cluster_128 (HCCA)

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(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
AES-1R,ASMDM+
AG1,ciproflaxin
D+7bld
DK2
E01
LB
LB,log
LB,untreated
PA1201
PA14
PA14,0.25xMIC G3KL
PA14,0.25xMIC T7
PA14,0.25xMIC polymyxin-B
PA14,LB
PA14,LB,log
PA14,WT
PA14,ciproflaxin
PA14,cmrA+
PA14,late stat,NaPyruvate+Arabinose
PA14,late stat,untreated
PA14,sutA-KO,late stat,NaPyruvate+Arabinose
PA14,untreated
PA212
PA2596
PA558
PA580
PAK,LB
PAK,WT
PAK,WT,LB
PAK,pilR
PAK,pmrB6,LB
PAO1
PAO1,0.56mg/mL farnesol
PAO1,ABTGC
PAO1,DDS
PAO1,GUN,LB,glucose
PAO1,HapZ,early stat
PAO1,LB
PAO1,LB,glucose
PAO1,LB,untreated
PAO1,M9-CA,early stat
PAO1,M9-CA,log
PAO1,RsmN+
PAO1,SagS,early stat
PAO1,WT
PAO1,WT,BHI
PAO1,WT,LB
PAO1,WT,MOPS acetate
PAO1,WT,MOPS glycerol
PAO1,early stat
PAO1,ersA,BHI
PAO1,lasR rhlR,M9-CA,early stat
PAO1,lasR rhlR,M9-CA,log
PAO1,liquid culture
PAO1,mexZ,LB
PAO1,oxylipin-
PAO1,pBAD-yhjH
PAO1,pUCP18::msr(E)
PAO1,qslA,M9-CA,early stat
PAO1,qslA,M9-CA,log
PAO1,qteE,M9-CA,early stat
PAO1,qteE,M9-CA,log
PAO1,untreated
PAO1,wspFpelApslBCD,LB
PAO1,wspFpelApslBCD,LB,untreated
Y31,LB
Y71,LB
Y82,LB
Y89,LB
ciproflaxin
liquid culture
m pheno
mexT
nirS
pHerdB20T-gp68
untreated
CRP24956 (hsdR_3)
 - 5.07 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -9.86 - - - - - - - - - - - - - - - - - - - - - - - - - - - -6.02 -6.52 5.21 -6.07 - - 2.43 - - - -
- 5.26 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -11.68 - - - - - - - - - - - - - - - - - - - - - - - - - - - -4.8 -7.46 5.13 -5.87 - - 1.38 - - - -
CRP25014 (mcrB)
 - 4.97 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -11.86 - - - - - - - - - - - - - - - - - - - - - - - - - - - -4.25 - 5.41 -6.63 - - 1.03 - - - -
- 5.07 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -10.64 - - - - - - - - - - - - - - - - - - - - - - - - - - - -6.34 -7.42 5.03 -6.83 - - 3.27 - - - -
- 4.69 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -9.85 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -5.63 5.41 -5.64 - - 2.94 - - - -
- 4.69 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -4.41 -5.49 5.49 - - - 2.34 - - - -
- 4.77 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -9.57 - - - - - - - - - - - - - - - - - - - - - - - - - - - -4.27 -5.94 5.42 -6.96 - - 2.53 - - - -
- 4.57 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -12.38 - - - - - -10.95 - - - - - - - - - - - - - - - - - - - - - - - - - - - - -6.73 5.46 - - - 3.05 - - - -
- 4.12 - - -5.37 - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -9.18 - - - - - - - - - - - - - - - - - - - - - - - - - - - -4.88 -6.96 5.61 - - - 3.26 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.