Heatmap: Cluster_86 (HCCA)

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(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
AES-1R,ASMDM+
AG1,ciproflaxin
D+7bld
DK2
E01
LB
LB,log
LB,untreated
PA1201
PA14
PA14,0.25xMIC G3KL
PA14,0.25xMIC T7
PA14,0.25xMIC polymyxin-B
PA14,LB
PA14,LB,log
PA14,WT
PA14,ciproflaxin
PA14,cmrA+
PA14,late stat,NaPyruvate+Arabinose
PA14,late stat,untreated
PA14,sutA-KO,late stat,NaPyruvate+Arabinose
PA14,untreated
PA212
PA2596
PA558
PA580
PAK,LB
PAK,WT
PAK,WT,LB
PAK,pilR
PAK,pmrB6,LB
PAO1
PAO1,0.56mg/mL farnesol
PAO1,ABTGC
PAO1,DDS
PAO1,GUN,LB,glucose
PAO1,HapZ,early stat
PAO1,LB
PAO1,LB,glucose
PAO1,LB,untreated
PAO1,M9-CA,early stat
PAO1,M9-CA,log
PAO1,RsmN+
PAO1,SagS,early stat
PAO1,WT
PAO1,WT,BHI
PAO1,WT,LB
PAO1,WT,MOPS acetate
PAO1,WT,MOPS glycerol
PAO1,early stat
PAO1,ersA,BHI
PAO1,lasR rhlR,M9-CA,early stat
PAO1,lasR rhlR,M9-CA,log
PAO1,liquid culture
PAO1,mexZ,LB
PAO1,oxylipin-
PAO1,pBAD-yhjH
PAO1,pUCP18::msr(E)
PAO1,qslA,M9-CA,early stat
PAO1,qslA,M9-CA,log
PAO1,qteE,M9-CA,early stat
PAO1,qteE,M9-CA,log
PAO1,untreated
PAO1,wspFpelApslBCD,LB
PAO1,wspFpelApslBCD,LB,untreated
Y31,LB
Y71,LB
Y82,LB
Y89,LB
ciproflaxin
liquid culture
m pheno
mexT
nirS
pHerdB20T-gp68
untreated
CRO81927 (trpC)
-0.05 -0.64 0.02 0.74 -0.27 1.63 -0.15 -0.12 -0.74 0.05 0.12 0.14 0.2 -0.25 0.18 0.44 -0.02 -0.11 -0.41 0.14 -0.62 0.12 -1.72 -0.94 0.45 0.51 0.56 0.23 -0.01 -0.16 0.83 -0.15 -0.56 0.51 -1.42 -0.61 -1.56 -0.21 -0.66 -0.9 0.1 -0.35 0.02 -1.62 -0.07 0.71 -0.62 0.34 -0.28 -1.43 0.97 0.05 -0.46 -0.08 -0.65 -1.53 1.11 -0.77 -0.31 -0.53 -0.4 -0.35 -0.91 -1.95 -1.26 0.8 1.07 1.24 1.13 0.18 0.06 -0.48 -0.14 -0.62 -0.07 -1.11
CRO81957 (trpD_1)
-0.22 -0.52 -0.44 0.66 -0.27 1.97 -0.11 -0.05 -0.5 -0.19 -0.09 -0.02 0.01 -0.0 0.01 -0.05 -1.21 -0.53 -0.82 -0.68 -1.33 -0.13 -1.29 -1.35 0.06 -0.12 0.01 -0.14 -0.42 -0.47 0.48 0.01 -0.8 0.5 -1.76 -0.24 -0.03 -0.52 0.04 0.17 -0.29 -0.49 0.41 -0.12 -0.21 1.19 0.05 0.18 -0.22 -0.02 1.51 -0.47 -0.78 -0.5 0.24 -3.29 0.58 -0.42 -0.74 -0.87 -0.68 -0.68 -0.67 -1.78 -0.54 0.77 1.17 1.38 1.3 -0.42 0.21 -0.44 -0.52 0.46 -0.15 -0.2
CRO81989 (trpG)
-0.26 -0.37 -0.45 0.2 0.24 1.47 0.12 0.99 -1.16 0.19 0.45 0.43 0.44 0.42 0.2 0.11 0.67 -0.35 -0.67 0.71 -0.47 0.28 -0.74 -1.04 0.12 -0.12 0.36 0.46 0.54 -0.51 0.85 -0.18 -1.29 -0.48 -1.32 -0.79 -2.81 -0.9 -0.85 -0.93 -0.74 -0.35 -1.07 -2.9 0.06 -0.39 -0.21 0.13 -0.28 -2.45 0.36 -0.95 -0.33 -0.43 -0.26 -2.75 0.69 -1.46 -1.71 -0.32 -1.74 -0.25 -1.5 -2.66 -2.34 1.41 1.29 1.92 1.32 1.09 -0.62 -0.4 -0.53 -0.15 0.17 0.67

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.