Heatmap: Cluster_87 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	AES-1R,ASMDM+	AG1,ciproflaxin	D+7bld	DK2	E01	LB	LB,log	LB,untreated	PA1201	PA14	PA14,0.25xMIC G3KL	PA14,0.25xMIC T7	PA14,0.25xMIC polymyxin-B	PA14,LB	PA14,LB,log	PA14,WT	PA14,ciproflaxin	PA14,cmrA+	PA14,late stat,NaPyruvate+Arabinose	PA14,late stat,untreated	PA14,sutA-KO,late stat,NaPyruvate+Arabinose	PA14,untreated	PA212	PA2596	PA558	PA580	PAK,LB	PAK,WT	PAK,WT,LB	PAK,pilR	PAK,pmrB6,LB	PAO1	PAO1,0.56mg/mL farnesol	PAO1,ABTGC	PAO1,DDS	PAO1,GUN,LB,glucose	PAO1,HapZ,early stat	PAO1,LB	PAO1,LB,glucose	PAO1,LB,untreated	PAO1,M9-CA,early stat	PAO1,M9-CA,log	PAO1,RsmN+	PAO1,SagS,early stat	PAO1,WT	PAO1,WT,BHI	PAO1,WT,LB	PAO1,WT,MOPS acetate	PAO1,WT,MOPS glycerol	PAO1,early stat	PAO1,ersA,BHI	PAO1,lasR rhlR,M9-CA,early stat	PAO1,lasR rhlR,M9-CA,log	PAO1,liquid culture	PAO1,mexZ,LB	PAO1,oxylipin-	PAO1,pBAD-yhjH	PAO1,pUCP18::msr(E)	PAO1,qslA,M9-CA,early stat	PAO1,qslA,M9-CA,log	PAO1,qteE,M9-CA,early stat	PAO1,qteE,M9-CA,log	PAO1,untreated	PAO1,wspFpelApslBCD,LB	PAO1,wspFpelApslBCD,LB,untreated	Y31,LB	Y71,LB	Y82,LB	Y89,LB	ciproflaxin	liquid culture	m pheno	mexT	nirS	pHerdB20T-gp68	untreated
CRO88249 (oprM_3)	0.59	-0.02	1.3	0.52	-1.47	-0.15	0.0	-0.48	-0.08	0.37	0.42	0.42	0.28	-0.35	0.13	1.03	0.84	0.37	-0.08	-0.92	-0.38	0.03	-0.68	0.54	-0.61	-0.49	0.14	-0.94	-0.49	-1.36	-0.25	-0.51	-0.76	0.28	0.25	-0.09	-1.8	0.44	0.56	0.37	-0.49	-0.38	0.58	-1.75	-0.53	0.37	-0.52	-0.55	-0.27	-1.8	0.22	-0.62	-0.77	0.19	-0.54	-1.72	-0.78	-0.43	-0.34	-0.7	-0.36	-0.45	-0.75	-0.92	-0.73	0.24	1.16	0.57	1.42	-0.31	1.1	-0.22	0.67	0.39	-0.41	-0.16
CRO88282 (mexB)	0.84	-0.34	1.53	0.16	-1.19	-0.75	-0.13	-1.24	-0.13	0.47	0.36	0.38	0.18	-0.68	-0.41	1.33	0.26	0.52	0.22	-0.38	-0.09	0.07	-0.7	0.27	-0.33	-0.33	0.69	-0.9	-0.24	-1.33	0.28	-0.54	-1.31	0.8	-0.17	-0.4	-1.84	0.51	-0.3	-0.68	-0.28	-0.61	0.04	-1.6	0.02	-0.47	-0.2	-0.53	-0.2	-1.77	-0.67	-0.49	-0.77	-0.04	-0.26	-0.42	-1.12	-0.49	-0.22	-0.78	-0.22	-0.34	-0.61	-0.72	-0.64	0.62	1.57	0.91	1.66	0.12	0.41	-0.08	0.81	-0.2	-0.42	-0.6
CRO88312 (mexA_1)	1.07	-0.34	1.34	-0.28	-0.92	0.12	0.99	-0.82	-0.15	0.15	0.37	0.26	-0.08	-0.29	-0.01	1.03	0.15	0.29	-0.16	-0.69	-0.42	-0.04	0.34	0.23	-0.68	-0.63	0.65	-0.88	-0.75	-1.35	0.18	-0.57	-0.55	0.6	0.75	-0.05	-1.54	0.55	0.11	-0.26	-0.58	-1.34	0.14	-1.2	-0.0	-0.25	-0.5	-0.9	-0.53	-1.5	-0.44	-0.89	-1.27	-0.19	-0.52	-1.2	-1.09	-0.65	-0.49	-1.52	-0.28	-1.18	-0.94	-0.79	-1.01	0.48	1.76	0.79	1.68	0.3	0.79	0.3	0.52	-0.52	0.0	-0.01
CRO88340 (mexR)	0.15	-1.21	-0.74	0.63	0.77	0.34	-0.07	-0.42	0.05	0.38	-0.19	-0.34	-0.84	1.7	-0.44	-1.37	-2.46	-1.37	1.03	-0.02	0.91	-0.33	-0.11	-0.7	0.42	0.02	-0.97	0.34	-1.75	1.02	-1.02	-0.12	-0.39	0.06	1.1	0.43	0.89	-0.18	0.05	-0.0	-1.18	-1.6	0.87	0.8	0.05	-1.37	1.08	-0.83	-0.12	0.93	-1.29	-1.31	-1.7	-1.5	0.94	-1.43	-1.36	-0.01	-1.13	-1.82	-0.7	-1.82	-0.03	-0.01	0.03	-0.58	-0.33	0.11	-0.61	1.4	1.45	-0.64	-1.39	-0.33	-0.17	-0.65

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.