Heatmap: Cluster_72 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
AES-1R,ASMDM+
AG1,ciproflaxin
D+7bld
DK2
E01
LB
LB,log
LB,untreated
PA1201
PA14
PA14,0.25xMIC G3KL
PA14,0.25xMIC T7
PA14,0.25xMIC polymyxin-B
PA14,LB
PA14,LB,log
PA14,WT
PA14,ciproflaxin
PA14,cmrA+
PA14,late stat,NaPyruvate+Arabinose
PA14,late stat,untreated
PA14,sutA-KO,late stat,NaPyruvate+Arabinose
PA14,untreated
PA212
PA2596
PA558
PA580
PAK,LB
PAK,WT
PAK,WT,LB
PAK,pilR
PAK,pmrB6,LB
PAO1
PAO1,0.56mg/mL farnesol
PAO1,ABTGC
PAO1,DDS
PAO1,GUN,LB,glucose
PAO1,HapZ,early stat
PAO1,LB
PAO1,LB,glucose
PAO1,LB,untreated
PAO1,M9-CA,early stat
PAO1,M9-CA,log
PAO1,RsmN+
PAO1,SagS,early stat
PAO1,WT
PAO1,WT,BHI
PAO1,WT,LB
PAO1,WT,MOPS acetate
PAO1,WT,MOPS glycerol
PAO1,early stat
PAO1,ersA,BHI
PAO1,lasR rhlR,M9-CA,early stat
PAO1,lasR rhlR,M9-CA,log
PAO1,liquid culture
PAO1,mexZ,LB
PAO1,oxylipin-
PAO1,pBAD-yhjH
PAO1,pUCP18::msr(E)
PAO1,qslA,M9-CA,early stat
PAO1,qslA,M9-CA,log
PAO1,qteE,M9-CA,early stat
PAO1,qteE,M9-CA,log
PAO1,untreated
PAO1,wspFpelApslBCD,LB
PAO1,wspFpelApslBCD,LB,untreated
Y31,LB
Y71,LB
Y82,LB
Y89,LB
ciproflaxin
liquid culture
m pheno
mexT
nirS
pHerdB20T-gp68
untreated
CRO04990 (ltaS1)
1.34 -0.34 0.62 0.04 -0.3 0.54 0.37 -1.29 -0.14 0.45 0.64 0.63 0.43 -0.11 -0.18 0.2 0.35 1.39 0.04 0.98 0.75 0.44 -1.45 -0.45 0.29 -0.02 0.68 -1.27 -0.08 -1.52 0.07 -0.58 -1.24 0.66 -0.57 -0.2 -2.79 -0.5 0.02 -0.03 -1.97 -0.68 0.04 -2.75 -0.17 -0.77 0.16 0.0 0.54 -2.81 -0.57 -1.75 -0.78 -0.24 0.16 0.24 -0.99 -1.48 -1.42 -0.5 -1.46 -0.44 -1.02 -2.04 -1.56 1.84 0.37 0.74 0.57 -0.01 -0.05 0.18 1.07 -0.83 -0.34 0.2
CRP12607 (ldc)
-0.15 -1.03 -1.45 -0.04 -0.59 0.51 0.66 -0.71 0.63 0.59 0.39 0.33 0.07 0.49 1.01 -1.18 -1.04 0.5 -0.12 -0.11 0.51 0.68 -1.15 0.88 0.05 0.45 -0.12 -0.89 -0.68 -1.27 -0.48 -0.17 -1.14 0.65 -2.19 0.48 -0.75 -0.38 0.53 0.7 -1.19 -0.38 1.07 -0.52 0.19 -1.05 0.61 0.26 0.95 -1.02 -1.02 -0.48 -0.44 -0.63 0.75 -0.04 -0.02 -0.43 -0.21 -0.55 0.02 -0.4 -0.33 -1.4 -0.6 0.12 0.48 -0.32 -0.39 0.58 -0.02 -0.44 0.54 -0.24 -0.18 0.56
0.69 -0.67 -0.66 -0.86 -0.18 -0.23 -0.12 -0.97 -0.19 0.44 0.87 0.76 0.63 0.49 0.73 0.68 0.66 0.7 0.1 0.34 0.23 0.65 -0.64 -0.9 0.68 1.08 -0.11 -0.41 -0.62 -0.63 0.06 -0.27 0.64 0.48 -1.2 -0.07 -3.4 -0.42 -0.43 -0.33 -1.07 -1.58 0.17 -3.37 -0.45 0.54 -0.56 0.89 0.77 -3.5 0.7 -1.46 -1.73 0.43 -0.49 -0.02 0.45 -2.28 -0.86 -1.35 -0.82 -1.4 -1.03 -3.67 -2.5 0.13 0.97 0.13 0.41 0.48 0.1 0.59 0.62 0.27 0.58 -0.12

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.