Heatmap: Cluster_108 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
AES-1R,ASMDM+
AG1,ciproflaxin
D+7bld
DK2
E01
LB
LB,log
LB,untreated
PA1201
PA14
PA14,0.25xMIC G3KL
PA14,0.25xMIC T7
PA14,0.25xMIC polymyxin-B
PA14,LB
PA14,LB,log
PA14,WT
PA14,ciproflaxin
PA14,cmrA+
PA14,late stat,NaPyruvate+Arabinose
PA14,late stat,untreated
PA14,sutA-KO,late stat,NaPyruvate+Arabinose
PA14,untreated
PA212
PA2596
PA558
PA580
PAK,LB
PAK,WT
PAK,WT,LB
PAK,pilR
PAK,pmrB6,LB
PAO1
PAO1,0.56mg/mL farnesol
PAO1,ABTGC
PAO1,DDS
PAO1,GUN,LB,glucose
PAO1,HapZ,early stat
PAO1,LB
PAO1,LB,glucose
PAO1,LB,untreated
PAO1,M9-CA,early stat
PAO1,M9-CA,log
PAO1,RsmN+
PAO1,SagS,early stat
PAO1,WT
PAO1,WT,BHI
PAO1,WT,LB
PAO1,WT,MOPS acetate
PAO1,WT,MOPS glycerol
PAO1,early stat
PAO1,ersA,BHI
PAO1,lasR rhlR,M9-CA,early stat
PAO1,lasR rhlR,M9-CA,log
PAO1,liquid culture
PAO1,mexZ,LB
PAO1,oxylipin-
PAO1,pBAD-yhjH
PAO1,pUCP18::msr(E)
PAO1,qslA,M9-CA,early stat
PAO1,qslA,M9-CA,log
PAO1,qteE,M9-CA,early stat
PAO1,qteE,M9-CA,log
PAO1,untreated
PAO1,wspFpelApslBCD,LB
PAO1,wspFpelApslBCD,LB,untreated
Y31,LB
Y71,LB
Y82,LB
Y89,LB
ciproflaxin
liquid culture
m pheno
mexT
nirS
pHerdB20T-gp68
untreated
CRN81460 (cph2_1)
-0.45 -0.06 -1.22 -0.12 4.13 0.12 -1.44 0.65 -2.24 0.11 -0.63 -0.5 -0.19 -0.55 -2.73 -0.28 -1.65 -2.36 0.02 0.78 0.53 -0.88 -0.22 -1.31 0.53 0.66 -0.66 -1.01 -1.43 -0.36 -0.29 1.06 0.53 -1.24 -1.73 0.46 -2.84 -2.27 -0.78 -0.27 -1.24 -3.23 -1.14 -2.88 -1.41 -0.37 -0.71 -1.6 -0.61 -2.43 -1.77 -1.38 -3.19 -2.03 -0.81 -3.99 -0.42 -2.61 -2.33 -3.71 -1.87 -3.77 -2.48 -4.08 -3.09 0.19 1.14 -0.85 -0.33 -1.37 -2.08 0.6 -1.96 0.05 3.47 -1.26
CRN81473 (ecpD_1)
-0.71 -0.46 -2.03 -0.11 4.6 -0.05 -1.04 1.67 -2.0 -0.18 -1.09 -0.61 -0.7 0.47 -1.82 -1.49 -2.5 -3.07 -0.94 0.07 -0.91 -0.85 -0.87 -2.62 -0.67 -0.6 -1.44 -1.51 -2.06 -0.57 -1.55 0.97 0.47 -1.88 -4.68 1.2 -3.01 -2.72 -0.72 -0.16 -1.6 -5.0 -1.65 -2.8 -1.55 0.05 -1.51 -2.41 -1.2 -2.5 -0.72 -2.79 -3.22 -1.64 -0.7 - -0.77 -4.08 -1.88 -3.7 -2.71 -4.19 -2.58 -4.74 -2.82 -1.02 0.67 -0.7 -0.94 -2.03 -2.06 0.64 -2.49 -1.28 3.53 0.08
-1.04 0.1 -2.04 -0.18 4.09 0.19 -0.57 1.39 -1.32 -0.22 -0.69 -0.49 -0.33 0.66 -1.48 -1.08 -1.41 -2.61 -0.8 0.42 -0.1 -1.12 -0.73 -1.59 0.32 -0.45 -0.99 -1.3 -2.51 -2.03 -0.98 0.9 0.62 -1.39 -2.66 1.93 -0.68 -1.47 0.91 0.59 -0.79 -3.7 -0.89 -0.96 -0.95 -0.14 -0.5 -1.43 -0.64 -0.48 -0.65 -0.67 -3.32 -1.21 -0.67 -3.14 -1.06 -2.2 -1.31 -3.38 -1.51 -2.94 -1.67 -2.52 -1.66 -0.42 0.41 -0.85 -0.87 -1.47 -1.23 0.67 -2.41 -0.24 2.77 0.33
CRN81525 (elfC)
-0.5 0.31 -1.28 -0.02 3.29 0.81 -0.41 0.95 -0.98 0.09 -0.56 -0.31 -0.29 0.55 -1.06 -0.11 -1.1 -1.57 -0.14 1.31 0.2 -0.72 -0.61 -0.83 0.64 0.65 -0.78 -0.93 -2.05 -0.53 -0.9 0.96 0.6 -0.79 -2.31 1.06 -0.14 -1.82 0.26 0.54 -1.05 -3.14 -0.27 -0.39 -0.77 -0.01 -0.94 -1.05 0.32 -0.24 -0.1 -1.22 -3.1 -1.09 -0.56 -4.24 -0.2 -2.02 -1.56 -3.02 -2.34 -2.8 -1.35 -2.43 -1.52 0.04 1.04 -0.13 0.04 -1.29 -1.25 0.59 -1.61 0.35 2.66 -0.04

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.