Heatmap: Cluster_112 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
AES-1R,ASMDM+
AG1,ciproflaxin
D+7bld
DK2
E01
LB
LB,log
LB,untreated
PA1201
PA14
PA14,0.25xMIC G3KL
PA14,0.25xMIC T7
PA14,0.25xMIC polymyxin-B
PA14,LB
PA14,LB,log
PA14,WT
PA14,ciproflaxin
PA14,cmrA+
PA14,late stat,NaPyruvate+Arabinose
PA14,late stat,untreated
PA14,sutA-KO,late stat,NaPyruvate+Arabinose
PA14,untreated
PA212
PA2596
PA558
PA580
PAK,LB
PAK,WT
PAK,WT,LB
PAK,pilR
PAK,pmrB6,LB
PAO1
PAO1,0.56mg/mL farnesol
PAO1,ABTGC
PAO1,DDS
PAO1,GUN,LB,glucose
PAO1,HapZ,early stat
PAO1,LB
PAO1,LB,glucose
PAO1,LB,untreated
PAO1,M9-CA,early stat
PAO1,M9-CA,log
PAO1,RsmN+
PAO1,SagS,early stat
PAO1,WT
PAO1,WT,BHI
PAO1,WT,LB
PAO1,WT,MOPS acetate
PAO1,WT,MOPS glycerol
PAO1,early stat
PAO1,ersA,BHI
PAO1,lasR rhlR,M9-CA,early stat
PAO1,lasR rhlR,M9-CA,log
PAO1,liquid culture
PAO1,mexZ,LB
PAO1,oxylipin-
PAO1,pBAD-yhjH
PAO1,pUCP18::msr(E)
PAO1,qslA,M9-CA,early stat
PAO1,qslA,M9-CA,log
PAO1,qteE,M9-CA,early stat
PAO1,qteE,M9-CA,log
PAO1,untreated
PAO1,wspFpelApslBCD,LB
PAO1,wspFpelApslBCD,LB,untreated
Y31,LB
Y71,LB
Y82,LB
Y89,LB
ciproflaxin
liquid culture
m pheno
mexT
nirS
pHerdB20T-gp68
untreated
CRP19457 (ygjH)
-1.31 -1.11 -0.26 -2.09 -0.93 0.08 -0.37 1.07 -0.39 -0.09 0.09 0.26 0.04 1.44 1.85 -1.16 1.07 -1.22 -0.29 -0.36 -0.47 -0.05 -0.36 -1.65 1.42 -0.36 -1.0 2.74 -0.33 3.21 -0.54 -0.26 0.09 -0.18 -1.81 -0.72 -2.29 -0.25 -1.78 -2.65 0.13 -1.07 -1.46 -2.6 -1.14 -0.25 -1.31 -1.18 -0.24 -3.5 0.61 -0.0 -1.07 -1.2 -1.61 -1.66 -0.96 -0.79 -0.09 -0.61 -0.1 -0.84 -1.52 -1.53 -1.97 -1.4 -0.33 -0.81 -0.52 -0.74 -0.44 -0.22 -1.25 -0.08 0.42 1.43
CRP19489 (yijE_3)
-0.52 -1.06 -0.43 -1.08 1.23 -0.54 -1.74 -0.77 -2.0 0.41 -0.08 -0.01 -0.02 -0.25 0.22 0.02 -1.18 -0.75 -0.43 -0.86 -0.46 -0.49 -1.96 -1.29 -0.33 -0.67 -0.42 1.96 -0.33 2.46 -0.25 -0.54 -0.12 -0.2 -2.24 -1.18 -3.73 -0.27 -2.59 -1.94 2.08 1.25 -1.62 -3.5 -1.3 -0.67 -2.66 -0.91 0.06 -3.47 -0.14 1.87 1.28 -0.48 -2.24 -5.96 -0.72 -1.65 1.87 1.23 1.67 1.33 -2.31 -2.36 -2.7 -0.47 0.19 -0.27 -0.1 -0.79 -1.33 0.12 -0.8 -1.55 1.01 -1.05

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.