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Heatmap: Cluster_20 (HCCA)

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Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL19123 (STM0159)
 79.42 411.17 112.39 59.95 80.74 34.62 313.13 84.48 29.76 55.25 41.86 54.56 236.9 21.09 507.03 0.09 22.43 114.29 112.86 143.46 93.72 198.55 0.0 0.0 106.09 43.68 0.0 98.23 48.15 173.9 70.01 129.51 57.43 0.0 8.02 0.0 0.0 97.54 235.78
AAL19250 (STM0293)
 20.37 98.57 24.32 5.91 11.54 4.28 57.09 19.75 11.27 23.85 33.12 4.95 49.26 14.63 18.39 0.0 11.63 31.7 26.73 41.47 37.79 17.27 0.0 0.0 20.14 10.24 0.0 23.53 9.62 13.78 9.4 20.2 10.66 0.0 3.13 0.0 0.0 21.86 29.88
AAL19393 (STM0438)
 15.02 64.47 9.96 6.92 14.91 5.35 15.58 13.18 23.03 5.97 41.96 1.33 12.04 9.53 11.25 5.44 43.88 13.97 17.12 16.98 3.8 7.81 3.31 1.99 4.98 8.41 4.75 6.98 3.29 10.22 7.41 12.63 3.68 9.02 37.21 4.08 2.34 13.97 15.43
AAL19988 (STM1055)
 11.81 136.23 43.6 14.11 10.0 18.7 51.64 29.26 12.1 92.1 19.42 7.93 29.86 18.26 45.96 36.29 15.11 27.75 28.52 40.3 37.17 143.99 63.54 6.37 62.21 16.09 0.0 22.08 19.41 32.36 38.6 37.46 11.82 45.91 14.41 0.0 6.58 17.97 25.3
AAL20257 (rfc)
 24.48 145.42 36.96 20.02 31.93 5.76 50.33 32.47 11.92 24.47 16.4 24.16 56.57 19.25 55.11 57.96 52.43 38.4 37.87 50.68 23.41 61.27 125.75 77.89 26.59 15.73 0.0 38.89 23.62 82.06 48.56 45.09 23.75 65.37 21.08 0.0 91.59 28.64 48.29
AAL20748 (STM1833)
 19.74 51.29 22.93 24.86 62.83 5.16 31.37 36.48 10.67 12.06 9.46 54.66 37.07 38.35 78.86 19.82 9.14 9.1 10.92 14.71 13.34 14.07 50.55 43.53 13.26 8.13 28.24 37.2 28.24 2.65 6.01 113.01 22.84 37.32 17.94 18.61 60.41 8.32 171.56
AAL20986 (rfbP)
 73.62 277.5 48.05 180.59 85.96 359.88 248.35 109.67 44.44 67.36 50.15 25.36 69.11 63.92 227.01 83.06 203.07 76.88 81.25 106.47 16.32 87.8 199.56 212.26 22.73 43.99 61.45 65.42 89.16 60.21 43.65 52.94 88.11 98.09 250.67 36.91 261.02 68.89 46.74
AAL20987 (rfbK)
 70.18 281.49 95.83 255.01 140.24 350.77 281.76 101.09 68.16 104.0 69.38 47.68 94.37 61.39 217.62 97.13 186.75 91.28 95.6 118.23 17.2 43.17 244.03 148.2 24.44 76.97 87.18 78.05 102.28 63.67 48.2 105.57 98.65 98.67 236.61 61.95 278.8 131.84 74.47
AAL20988 (rfbM)
 130.72 373.97 77.13 281.5 118.36 380.52 394.89 143.49 68.61 91.95 78.21 62.8 94.09 84.02 358.92 85.44 238.98 103.17 118.74 141.87 17.3 85.66 227.23 208.42 28.6 85.73 91.74 80.29 129.99 109.26 34.81 97.25 121.9 80.46 339.06 63.93 307.65 100.29 86.09
AAL20989 (rfbN)
 108.37 378.35 66.9 244.23 105.46 408.32 263.66 118.01 73.1 88.95 84.25 67.24 79.42 90.23 161.73 80.44 152.74 51.48 60.48 68.46 20.57 91.62 237.68 323.15 35.23 86.79 98.0 66.37 119.43 250.89 34.02 90.6 115.47 76.94 192.68 75.02 288.24 79.43 96.65
AAL20990 (rfbU)
 65.89 398.56 50.72 177.24 79.74 276.12 173.8 82.07 45.47 53.06 49.54 37.59 66.09 34.6 155.95 56.37 99.5 30.72 37.51 44.86 20.36 70.84 215.31 208.98 23.9 43.47 64.85 55.2 63.36 150.2 26.07 77.68 70.75 60.62 129.7 45.74 213.29 60.87 89.86
AAL20991 (rfbV)
 148.9 548.46 70.31 205.16 144.49 225.68 452.6 181.43 55.37 95.65 60.09 58.2 104.03 65.88 286.47 0.11 174.84 103.3 108.09 138.98 36.43 88.6 0.0 0.0 32.0 62.18 64.52 61.8 97.8 225.91 66.77 122.31 94.69 0.0 205.55 77.49 0.11 97.36 144.04
AAL20992 (rfbX)
 51.74 377.86 31.15 67.1 60.29 99.68 209.74 86.14 33.89 30.86 39.54 44.27 51.92 29.68 108.23 0.03 120.62 45.13 60.59 68.66 22.49 60.92 0.0 0.0 23.68 28.15 43.4 26.95 40.14 103.63 23.53 55.37 48.12 0.0 141.8 34.11 0.05 48.53 64.57
AAL20993 (rfbJ)
 143.33 827.92 122.05 111.19 184.87 164.81 510.57 128.15 81.12 106.4 84.41 80.99 139.02 57.31 291.8 0.11 148.18 156.13 157.05 191.72 35.96 103.79 0.0 0.0 28.87 60.76 77.03 64.84 77.26 67.24 33.39 171.39 97.19 0.0 141.74 46.61 0.07 192.66 181.41
AAL20994 (rfbH)
 256.97 740.78 348.84 743.89 671.14 461.02 903.77 382.33 458.54 466.92 327.4 374.79 314.2 387.46 621.43 275.48 577.7 284.12 322.92 341.22 55.35 149.72 620.48 338.36 68.47 391.39 379.7 257.35 426.36 310.35 149.03 555.99 509.98 202.65 544.7 380.26 362.9 589.38 577.47
AAL20995 (rfbG)
 152.94 554.78 221.92 388.53 601.92 281.76 467.52 267.95 392.78 267.39 380.28 274.61 278.1 278.99 266.19 269.39 285.35 204.13 231.9 246.43 49.89 60.54 640.04 265.46 66.78 270.65 236.87 187.23 274.04 136.02 122.83 477.49 376.08 226.8 285.17 212.98 406.54 555.83 490.48
AAL20996 (rfbF)
 100.4 419.46 265.74 327.38 665.24 183.74 466.32 269.24 344.76 256.82 298.24 251.19 331.45 275.82 377.65 222.64 205.99 230.97 187.46 229.21 44.56 55.41 531.79 176.88 57.52 221.17 200.23 187.5 323.68 157.66 188.62 542.47 427.96 206.5 193.25 191.37 210.89 709.36 517.79
AAL20997 (rfbI)
 98.92 510.37 128.33 209.8 273.17 92.39 512.3 185.53 176.1 130.35 154.89 152.91 144.64 153.79 232.7 144.93 246.3 171.5 210.65 214.51 30.27 62.49 393.84 217.82 46.53 146.62 148.16 93.56 183.33 128.96 56.3 204.97 249.94 129.61 286.31 86.89 355.84 283.19 201.31
AAL20998 (rfbC)
 118.0 650.16 142.59 281.1 310.82 118.05 691.2 232.8 216.63 170.79 157.62 181.35 154.6 185.58 476.52 193.57 374.09 273.89 281.84 305.49 40.04 86.81 525.0 202.34 59.19 162.69 171.4 156.36 293.99 173.45 76.2 223.77 368.07 153.01 455.36 104.6 318.64 338.09 210.22
AAL21134 (oafA)
 56.77 288.44 25.31 79.0 29.45 31.06 146.48 64.86 48.79 49.3 49.9 48.96 22.39 73.97 120.39 0.09 333.4 70.03 71.73 75.72 3.59 31.04 0.0 0.01 6.87 53.11 65.09 37.11 27.65 80.51 14.62 40.76 31.5 0.0 212.67 47.19 0.08 25.94 28.47
AAL21140 (STM2238)
 17.75 242.7 23.73 34.38 24.13 33.27 117.6 41.18 58.31 82.36 44.86 25.0 10.52 9.27 176.0 0.02 147.75 45.63 45.78 53.6 6.07 56.12 0.0 0.0 6.19 25.7 34.37 29.71 11.65 91.08 26.83 58.44 10.44 0.0 127.56 49.73 0.05 10.52 48.46
AAL21182 (STM2281)
 38.94 131.3 13.06 48.44 21.42 7.76 11.11 35.36 60.45 22.8 51.39 24.23 11.02 5.37 287.38 20.97 76.28 27.31 25.21 34.26 5.11 26.28 35.14 54.32 8.88 22.7 13.05 36.21 5.85 5.68 64.74 25.09 5.23 13.29 177.43 10.82 122.68 18.53 25.63
AAL21402 (STM2508)
 29.0 51.35 39.66 10.01 14.19 2.0 13.93 17.41 14.68 9.24 45.7 3.12 72.12 15.3 16.91 49.04 9.07 33.85 29.06 40.94 8.37 9.76 71.3 2.98 19.07 9.62 12.73 23.07 18.74 11.48 26.0 23.43 19.04 60.53 42.17 7.81 4.28 20.42 38.34
AAL21478 (gogB)
 27.78 149.46 29.23 10.8 8.51 11.97 142.16 44.29 6.28 17.17 10.01 5.8 13.47 24.31 112.66 0.14 0.0 40.61 45.81 51.67 89.28 218.24 0.0 0.0 84.32 5.35 0.0 13.07 4.17 17.5 14.75 21.46 3.63 0.0 0.0 0.0 0.0 9.18 12.56
AAL21628 (STM2742)
 33.86 92.64 19.53 28.79 18.41 6.63 61.35 26.58 36.99 37.24 65.5 29.76 20.5 21.44 90.88 0.0 46.28 58.12 51.18 64.64 5.01 19.6 0.0 0.0 6.66 35.33 45.58 43.13 23.25 55.46 20.03 19.7 26.81 0.0 57.21 51.47 0.06 15.51 30.2
AAL21629 (STM2743)
 34.36 108.56 28.1 26.67 13.04 3.17 80.97 38.44 18.41 26.79 44.49 4.66 30.09 18.09 86.36 0.06 41.74 75.28 67.52 98.93 13.4 36.47 0.0 0.0 13.22 12.64 13.45 36.11 23.15 31.07 17.81 25.36 20.92 0.0 17.64 18.14 0.01 20.26 35.91
AAL21632 (STM2746)
 38.5 319.91 21.83 36.34 30.01 18.4 250.03 64.74 16.91 64.32 22.52 51.29 37.64 10.05 434.81 0.02 19.0 61.8 60.7 80.56 35.08 114.27 0.0 0.0 56.07 9.4 40.57 47.86 27.29 107.29 46.81 47.7 25.6 0.0 5.17 54.07 0.04 21.98 63.55
AAL21633 (STM2747)
 25.13 260.9 20.99 22.65 30.67 16.04 87.66 32.72 13.77 37.75 21.28 46.92 19.8 11.81 139.77 0.03 11.49 15.82 23.97 20.81 18.23 104.13 0.0 0.0 34.4 5.82 32.09 42.03 18.68 86.66 17.35 68.65 23.88 0.0 6.01 32.04 0.05 12.65 76.03
AAL21640 (STM2754)
 12.3 87.73 8.82 17.68 18.39 6.12 41.03 23.96 16.33 31.92 19.62 8.94 19.13 15.56 190.15 0.0 143.25 71.26 49.93 74.47 2.79 28.29 0.0 0.0 5.5 11.07 15.44 21.08 5.82 11.97 7.47 20.89 6.43 0.0 124.07 15.63 0.01 11.05 34.11
AAL21652 (STM2766)
 28.22 256.25 21.68 29.45 30.46 29.76 96.66 30.06 23.6 40.08 23.84 37.94 13.29 8.35 91.5 0.03 70.73 14.25 24.36 19.51 17.44 40.21 0.0 0.0 12.02 8.41 50.9 30.45 32.81 84.04 27.26 36.82 31.79 0.0 45.82 44.79 0.09 7.33 45.0
AAL21653 (STM2767)
 54.1 433.78 38.45 72.57 47.73 41.89 500.02 89.35 50.18 80.64 57.47 59.01 32.04 35.19 598.3 0.05 213.8 123.92 129.34 147.51 29.89 65.74 0.0 0.0 18.02 27.97 90.9 66.78 40.3 145.15 56.32 62.51 37.08 0.0 161.73 93.86 0.06 26.98 74.89
AAL21656 (fljA)
 15.13 202.39 36.44 12.35 1.15 0.36 4.59 89.81 28.87 2.94 28.03 1.64 2.52 5.03 0.26 0.0 73.85 509.82 17.1 13.28 1.33 1.11 0.0 0.0 3.45 5.22 7.27 22.5 1.17 0.66 11.66 40.64 0.86 0.0 0.89 6.23 0.03 1.72 2.14
AAL21782 (STM2902)
 34.4 143.69 31.38 17.29 16.82 3.98 54.87 47.63 13.33 33.2 43.9 11.45 32.18 38.44 108.36 0.0 33.32 69.61 44.9 80.63 9.39 38.69 0.0 0.0 8.42 13.09 39.62 31.27 22.56 26.93 12.54 34.36 20.79 0.0 9.79 38.6 0.03 18.16 41.88
AAL22497 (lpfD)
 50.85 141.8 54.63 24.0 42.8 2.35 77.33 18.04 16.26 16.21 23.94 8.79 67.22 15.24 105.2 23.08 11.38 87.15 86.49 134.61 7.94 12.91 10.64 3.31 7.96 14.08 7.28 51.14 17.48 6.45 24.61 64.31 23.65 14.84 13.29 6.45 3.47 49.24 64.19
AAL22572 (rfaL)
 84.23 408.55 28.61 111.61 65.51 104.53 198.11 79.66 36.77 80.85 42.81 167.02 39.9 84.02 254.98 73.65 212.0 55.56 74.47 70.95 15.7 56.21 140.62 106.32 15.2 56.8 58.84 65.2 52.33 108.88 21.48 60.57 54.49 67.19 261.1 47.1 208.57 38.2 114.31
AAL22574 (rfaZ)
 141.51 242.04 47.89 48.32 62.65 92.47 98.23 61.2 24.46 42.19 30.26 54.23 98.14 39.07 49.76 64.2 30.79 17.49 24.15 26.29 42.93 76.89 166.68 115.94 59.15 47.71 49.47 72.1 55.73 142.5 18.74 67.89 55.65 49.93 33.09 51.35 271.1 48.39 82.48
AAL22575 (rfaY)
 105.64 318.88 28.04 74.06 69.24 122.42 270.67 88.68 24.37 48.76 25.55 57.49 45.39 40.9 250.35 48.69 109.5 80.33 74.84 97.28 13.38 37.75 189.27 307.76 15.69 24.18 39.04 49.74 48.19 116.57 20.72 48.21 49.85 52.27 147.9 43.14 335.36 43.43 43.14
AAL22576 (rfaJ)
 42.89 281.95 33.32 52.51 42.06 115.76 123.24 54.62 27.43 48.32 30.21 51.73 35.22 22.88 81.93 35.44 60.17 39.53 47.71 57.42 11.92 63.82 97.19 149.53 15.72 30.56 36.29 35.88 45.06 106.99 14.4 33.35 37.58 33.56 65.86 36.67 285.36 34.78 27.9
AAL22577 (rfaI)
 64.42 236.15 46.22 68.66 62.37 99.57 134.17 71.84 52.88 58.08 66.19 63.86 47.34 43.73 106.16 51.18 112.43 48.18 59.49 61.52 15.35 72.17 150.48 179.35 23.15 56.35 55.14 58.27 67.93 173.17 33.0 44.74 68.57 56.24 106.12 47.75 310.85 49.93 41.31
AAL22578 (rfaB)
 78.95 261.05 34.46 46.67 56.6 51.3 132.78 73.24 44.1 47.3 55.97 65.01 40.61 35.92 119.89 32.85 64.42 51.38 55.49 60.55 14.46 68.44 97.46 205.94 20.93 45.53 50.62 40.29 45.55 76.36 24.08 46.29 51.82 29.82 66.33 36.52 431.6 35.43 33.0
AAL22579 (yibR)
 126.32 621.97 86.77 53.3 115.3 78.74 108.17 82.39 102.74 86.75 111.55 94.45 76.22 65.16 24.5 50.46 25.55 27.38 15.07 26.08 77.88 136.4 212.86 39.97 62.65 46.16 77.67 82.36 103.67 190.22 53.91 89.28 87.91 51.56 26.94 60.48 42.58 103.89 57.6
AAL22703 (STM3845)
 74.38 343.55 29.78 22.69 32.84 5.47 156.65 46.94 20.4 30.73 34.5 55.41 100.14 20.4 128.13 0.04 38.25 42.72 37.42 69.79 6.48 19.74 0.0 0.0 10.92 22.77 0.0 47.01 23.32 132.03 11.49 72.11 21.83 0.0 29.41 0.0 0.0 24.59 123.13
AAL22704 (STM3846)
 54.12 296.08 16.55 11.31 22.46 3.43 51.21 27.79 10.75 32.97 15.74 32.26 18.39 16.69 58.97 0.03 6.5 12.94 16.48 15.99 8.79 16.49 0.0 0.0 8.17 7.39 0.0 27.3 17.82 68.29 15.93 31.17 15.37 0.0 4.04 0.0 0.0 12.73 49.17
AAL22983 (STM4155)
 67.88 134.25 6.98 10.44 26.53 52.82 31.76 17.99 5.79 6.02 11.23 16.96 7.48 13.39 8.32 28.13 15.32 10.99 15.71 16.82 2.12 29.69 24.99 64.04 3.75 5.57 7.31 3.59 4.83 3.81 2.24 16.29 4.71 10.62 12.38 3.49 236.86 16.74 28.83
AAL22984 (STM4156)
 51.05 84.21 1.87 4.8 15.71 20.26 16.38 13.91 6.66 2.36 16.13 9.17 9.42 15.57 4.01 18.06 7.07 4.76 6.74 7.07 6.99 2.97 11.35 35.24 6.58 7.54 2.54 3.81 4.29 12.51 1.79 7.63 4.81 5.92 8.72 2.44 160.55 13.28 26.52
AAL22985 (STM4157)
 28.17 98.18 13.39 8.45 7.24 16.54 40.56 31.34 11.76 15.02 20.8 4.37 9.53 36.56 43.64 96.48 40.44 14.38 11.81 18.21 70.89 147.3 30.3 6.65 55.53 21.93 0.0 12.76 11.32 12.48 4.16 11.06 9.75 16.76 29.0 0.0 7.29 9.61 21.88
AAL23028 (STM4204)
 21.32 45.73 8.96 12.72 14.17 3.51 21.2 16.24 29.28 11.28 41.59 15.79 6.88 12.88 23.53 0.03 57.76 17.84 22.38 26.28 2.21 6.43 0.0 0.0 5.34 23.02 18.05 14.36 12.87 29.31 5.62 10.07 13.39 0.0 24.55 10.81 0.02 13.18 12.56
AAL23313 (STM4495)
 36.35 172.77 31.12 50.7 49.58 41.49 134.27 50.87 40.34 57.36 31.34 78.94 35.76 30.74 225.06 0.03 42.74 38.08 44.37 54.41 7.1 31.4 0.0 0.0 7.41 25.46 0.0 34.17 34.48 14.95 18.75 68.09 35.8 0.0 51.51 0.0 0.0 24.76 57.97
AAL23342 (hsdS)
 20.91 148.35 9.24 23.64 18.18 14.03 71.36 34.54 10.11 26.96 11.75 38.81 11.42 22.56 151.65 0.0 23.28 25.74 24.92 30.96 13.36 22.67 0.0 7.77 10.94 15.35 31.09 28.5 20.84 9.15 7.24 20.38 14.77 0.0 44.6 33.26 30.45 17.59 22.62
AAL23445 (repC)
 785.43 2835.52 1182.49 1177.3 747.62 110.36 3541.77 1717.45 106.18 948.49 120.16 307.69 1593.96 604.2 4098.99 869.26 1261.58 2552.78 2626.01 3886.12 226.12 614.08 1037.4 269.43 375.44 369.33 0.0 742.94 384.25 1251.37 1488.49 1300.9 452.55 864.86 1560.29 0.0 290.87 950.65 1263.09
AAL23505 (traS)
 257.35 719.88 575.59 199.81 427.72 99.29 544.4 487.85 96.28 447.64 86.41 45.18 683.52 666.65 563.24 0.18 362.32 768.17 606.99 931.58 115.04 371.71 0.0 0.0 357.05 100.42 0.0 273.4 161.38 25.48 386.68 611.59 125.15 0.0 153.34 0.0 0.0 725.56 1122.04

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)