Heatmap: Cluster_20 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL19123 (STM0159)
-0.32 2.05 0.18 -0.73 -0.3 -1.52 1.66 -0.23 -1.74 -0.85 -1.25 -0.87 1.25 -2.24 2.35 -10.08 -2.15 0.2 0.18 0.53 -0.08 1.0 - - 0.09 -1.19 - -0.02 -1.05 0.81 -0.51 0.38 -0.79 - -3.63 - - -0.03 1.25
AAL19250 (STM0293)
0.11 2.38 0.37 -1.68 -0.71 -2.14 1.6 0.06 -0.74 0.34 0.81 -1.93 1.38 -0.37 -0.04 - -0.7 0.75 0.5 1.14 1.0 -0.13 - - 0.09 -0.88 - 0.32 -0.97 -0.45 -1.01 0.1 -0.82 - -2.59 - - 0.21 0.66
AAL19393 (STM0438)
0.2 2.3 -0.39 -0.92 0.19 -1.29 0.25 0.01 0.82 -1.13 1.68 -3.29 -0.12 -0.45 -0.22 -1.26 1.75 0.1 0.39 0.38 -1.78 -0.74 -1.98 -2.72 -1.39 -0.63 -1.46 -0.9 -1.99 -0.35 -0.82 -0.05 -1.83 -0.53 1.51 -1.68 -2.48 0.1 0.24
AAL19988 (STM1055)
-1.49 2.04 0.4 -1.23 -1.73 -0.82 0.64 -0.18 -1.45 1.48 -0.77 -2.06 -0.15 -0.86 0.47 0.13 -1.13 -0.25 -0.21 0.28 0.17 2.12 0.94 -2.38 0.91 -1.04 - -0.58 -0.77 -0.03 0.22 0.18 -1.49 0.47 -1.2 - -2.33 -0.88 -0.39
AAL20257 (rfc)
-0.78 1.79 -0.19 -1.07 -0.4 -2.87 0.26 -0.37 -1.82 -0.78 -1.36 -0.8 0.43 -1.13 0.39 0.46 0.32 -0.13 -0.15 0.27 -0.84 0.54 1.58 0.89 -0.66 -1.42 - -0.11 -0.83 0.96 0.21 0.1 -0.82 0.64 -1.0 - 1.12 -0.55 0.2
AAL20748 (STM1833)
-0.7 0.67 -0.49 -0.37 0.97 -2.64 -0.04 0.18 -1.59 -1.42 -1.77 0.76 0.2 0.25 1.29 -0.7 -1.82 -1.82 -1.56 -1.13 -1.27 -1.19 0.65 0.44 -1.28 -1.98 -0.19 0.21 -0.19 -3.6 -2.42 1.81 -0.49 0.21 -0.84 -0.79 0.91 -1.95 2.41
AAL20986 (rfbP)
-0.58 1.34 -1.19 0.72 -0.35 1.71 1.18 -0.0 -1.31 -0.71 -1.13 -2.12 -0.67 -0.78 1.05 -0.4 0.89 -0.52 -0.44 -0.05 -2.75 -0.32 0.86 0.95 -2.27 -1.32 -0.84 -0.75 -0.3 -0.87 -1.33 -1.05 -0.32 -0.16 1.19 -1.57 1.25 -0.67 -1.23
AAL20987 (rfbK)
-0.82 1.18 -0.38 1.04 0.17 1.5 1.18 -0.3 -0.87 -0.26 -0.84 -1.38 -0.4 -1.02 0.81 -0.36 0.59 -0.45 -0.38 -0.07 -2.85 -1.53 0.97 0.25 -2.35 -0.69 -0.51 -0.67 -0.28 -0.97 -1.37 -0.24 -0.33 -0.33 0.93 -1.0 1.17 0.08 -0.74
AAL20988 (rfbM)
-0.17 1.35 -0.93 0.94 -0.31 1.37 1.43 -0.03 -1.1 -0.67 -0.91 -1.22 -0.64 -0.8 1.29 -0.78 0.7 -0.51 -0.31 -0.05 -3.08 -0.78 0.63 0.51 -2.36 -0.78 -0.68 -0.87 -0.17 -0.43 -2.08 -0.59 -0.27 -0.87 1.21 -1.2 1.07 -0.55 -0.77
AAL20989 (rfbN)
-0.28 1.52 -0.98 0.89 -0.32 1.63 1.0 -0.16 -0.85 -0.56 -0.64 -0.97 -0.73 -0.54 0.3 -0.71 0.22 -1.35 -1.12 -0.94 -2.68 -0.52 0.85 1.3 -1.9 -0.6 -0.42 -0.99 -0.14 0.93 -1.95 -0.54 -0.19 -0.77 0.55 -0.81 1.13 -0.73 -0.44
AAL20990 (rfbU)
-0.53 2.07 -0.91 0.9 -0.25 1.54 0.87 -0.21 -1.06 -0.84 -0.94 -1.34 -0.52 -1.46 0.71 -0.75 0.07 -1.63 -1.34 -1.08 -2.22 -0.42 1.18 1.14 -1.99 -1.13 -0.55 -0.78 -0.58 0.66 -1.87 -0.29 -0.43 -0.65 0.45 -1.05 1.17 -0.64 -0.08
AAL20991 (rfbV)
0.3 2.18 -0.78 0.77 0.26 0.9 1.91 0.59 -1.12 -0.34 -1.01 -1.05 -0.21 -0.87 1.25 -10.14 0.54 -0.22 -0.16 0.2 -1.73 -0.45 - - -1.91 -0.96 -0.9 -0.97 -0.3 0.9 -0.85 0.02 -0.35 - 0.77 -0.64 -10.07 -0.31 0.26
AAL20992 (rfbX)
-0.24 2.63 -0.97 0.14 -0.02 0.71 1.78 0.5 -0.85 -0.99 -0.63 -0.46 -0.23 -1.04 0.83 -10.9 0.98 -0.44 -0.01 0.17 -1.44 -0.0 - - -1.37 -1.12 -0.49 -1.18 -0.61 0.76 -1.38 -0.14 -0.34 - 1.21 -0.84 -10.32 -0.33 0.08
AAL20993 (rfbJ)
0.14 2.67 -0.09 -0.22 0.51 0.34 1.97 -0.02 -0.68 -0.29 -0.62 -0.68 0.1 -1.18 1.17 -10.2 0.19 0.27 0.27 0.56 -1.85 -0.32 - - -2.17 -1.1 -0.75 -1.0 -0.75 -0.95 -1.96 0.4 -0.42 - 0.13 -1.48 -10.91 0.57 0.48
AAL20994 (rfbH)
-0.69 0.84 -0.25 0.85 0.7 0.16 1.13 -0.11 0.15 0.17 -0.34 -0.14 -0.4 -0.09 0.59 -0.59 0.48 -0.54 -0.36 -0.28 -2.9 -1.47 0.59 -0.29 -2.59 -0.08 -0.12 -0.68 0.04 -0.41 -1.47 0.43 0.3 -1.03 0.4 -0.12 -0.19 0.51 0.48
AAL20995 (rfbG)
-0.97 0.89 -0.43 0.38 1.01 -0.08 0.65 -0.16 0.39 -0.16 0.35 -0.12 -0.1 -0.1 -0.17 -0.15 -0.07 -0.55 -0.37 -0.28 -2.58 -2.3 1.1 -0.17 -2.16 -0.14 -0.34 -0.67 -0.12 -1.14 -1.28 0.68 0.33 -0.4 -0.07 -0.49 0.44 0.9 0.71
AAL20996 (rfbF)
-1.5 0.57 -0.09 0.21 1.23 -0.63 0.72 -0.07 0.28 -0.14 0.07 -0.17 0.23 -0.04 0.41 -0.35 -0.46 -0.3 -0.6 -0.31 -2.67 -2.35 0.91 -0.68 -2.3 -0.36 -0.5 -0.6 0.19 -0.85 -0.59 0.94 0.59 -0.46 -0.55 -0.57 -0.43 1.32 0.87
AAL20997 (rfbI)
-0.95 1.42 -0.57 0.14 0.52 -1.05 1.42 -0.04 -0.12 -0.55 -0.3 -0.32 -0.4 -0.31 0.28 -0.4 0.37 -0.16 0.14 0.17 -2.66 -1.61 1.04 0.19 -2.04 -0.38 -0.37 -1.03 -0.06 -0.57 -1.76 0.1 0.39 -0.56 0.58 -1.14 0.9 0.57 0.08
AAL20998 (rfbC)
-1.07 1.4 -0.79 0.19 0.33 -1.07 1.48 -0.09 -0.19 -0.53 -0.65 -0.45 -0.68 -0.41 0.95 -0.35 0.6 0.15 0.19 0.31 -2.63 -1.51 1.09 -0.29 -2.06 -0.6 -0.53 -0.66 0.25 -0.51 -1.7 -0.14 0.58 -0.69 0.88 -1.24 0.37 0.45 -0.23
AAL21134 (oafA)
-0.11 2.23 -1.28 0.36 -1.06 -0.98 1.26 0.08 -0.33 -0.32 -0.3 -0.33 -1.45 0.27 0.97 -9.44 2.44 0.19 0.23 0.3 -4.09 -0.98 - -12.98 -3.16 -0.21 0.09 -0.73 -1.15 0.39 -2.07 -0.59 -0.96 - 1.79 -0.38 -9.56 -1.24 -1.11
AAL21140 (STM2238)
-1.4 2.37 -0.98 -0.45 -0.96 -0.49 1.33 -0.19 0.32 0.81 -0.06 -0.91 -2.15 -2.34 1.91 -11.51 1.66 -0.04 -0.03 0.19 -2.95 0.26 - - -2.92 -0.87 -0.45 -0.66 -2.01 0.96 -0.8 0.32 -2.17 - 1.45 0.09 -9.87 -2.15 0.05
AAL21182 (STM2281)
-0.1 1.65 -1.68 0.21 -0.96 -2.43 -1.91 -0.24 0.53 -0.87 0.3 -0.79 -1.92 -2.96 2.78 -1.0 0.87 -0.61 -0.73 -0.29 -3.03 -0.67 -0.25 0.38 -2.23 -0.88 -1.68 -0.21 -2.84 -2.88 0.63 -0.74 -3.0 -1.65 2.09 -1.95 1.55 -1.17 -0.71
AAL21402 (STM2508)
0.26 1.08 0.71 -1.28 -0.77 -3.6 -0.8 -0.48 -0.72 -1.39 0.91 -2.96 1.57 -0.66 -0.52 1.02 -1.42 0.48 0.26 0.76 -1.54 -1.31 1.56 -3.03 -0.35 -1.33 -0.93 -0.07 -0.37 -1.08 0.1 -0.05 -0.35 1.32 0.8 -1.64 -2.5 -0.25 0.66
AAL21478 (gogB)
-0.2 2.23 -0.13 -1.56 -1.91 -1.42 2.15 0.47 -2.35 -0.9 -1.67 -2.46 -1.25 -0.39 1.82 -7.83 - 0.35 0.52 0.69 1.48 2.77 - - 1.4 -2.58 - -1.29 -2.94 -0.87 -1.11 -0.57 -3.14 - - - - -1.8 -1.35
AAL21628 (STM2742)
0.06 1.51 -0.73 -0.17 -0.82 -2.29 0.92 -0.29 0.19 0.2 1.01 -0.12 -0.66 -0.6 1.49 - 0.51 0.84 0.66 0.99 -2.69 -0.73 - - -2.28 0.12 0.49 0.41 -0.48 0.77 -0.7 -0.72 -0.28 - 0.82 0.67 -9.15 -1.06 -0.1
AAL21629 (STM2743)
0.18 1.84 -0.11 -0.18 -1.22 -3.26 1.42 0.34 -0.72 -0.18 0.55 -2.7 -0.01 -0.74 1.51 -9.08 0.46 1.31 1.16 1.71 -1.18 0.27 - - -1.2 -1.26 -1.17 0.25 -0.39 0.04 -0.77 -0.26 -0.53 - -0.78 -0.74 -11.97 -0.58 0.25
AAL21632 (STM2746)
-0.64 2.41 -1.46 -0.72 -1.0 -1.71 2.06 0.11 -1.83 0.1 -1.42 -0.23 -0.67 -2.58 2.86 -11.92 -1.66 0.04 0.02 0.42 -0.78 0.93 - - -0.1 -2.68 -0.57 -0.33 -1.14 0.84 -0.36 -0.33 -1.23 - -3.54 -0.15 -10.43 -1.45 0.08
AAL21633 (STM2747)
-0.55 2.82 -0.81 -0.7 -0.27 -1.2 1.25 -0.17 -1.42 0.03 -0.79 0.35 -0.9 -1.64 1.92 -10.34 -1.68 -1.22 -0.62 -0.83 -1.02 1.5 - - -0.1 -2.66 -0.2 0.19 -0.98 1.23 -1.09 0.9 -0.63 - -2.62 -0.2 -9.43 -1.54 1.04
AAL21640 (STM2754)
-1.3 1.54 -1.78 -0.77 -0.72 -2.3 0.44 -0.33 -0.89 0.08 -0.62 -1.76 -0.66 -0.96 2.65 - 2.25 1.24 0.72 1.3 -3.44 -0.09 - - -2.46 -1.45 -0.97 -0.52 -2.38 -1.34 -2.02 -0.53 -2.23 - 2.04 -0.95 -11.64 -1.45 0.18
AAL21652 (STM2766)
-0.35 2.83 -0.73 -0.29 -0.24 -0.28 1.42 -0.26 -0.61 0.15 -0.6 0.07 -1.44 -2.11 1.34 -10.46 0.97 -1.34 -0.56 -0.88 -1.05 0.16 - - -1.58 -2.1 0.5 -0.24 -0.13 1.22 -0.4 0.03 -0.18 - 0.35 0.31 -8.71 -2.3 0.32
AAL21653 (STM2767)
-0.85 2.15 -1.34 -0.43 -1.03 -1.22 2.36 -0.13 -0.96 -0.27 -0.76 -0.72 -1.61 -1.47 2.62 -10.89 1.13 0.35 0.41 0.6 -1.71 -0.57 - - -2.44 -1.8 -0.1 -0.55 -1.27 0.57 -0.79 -0.64 -1.4 - 0.73 -0.06 -10.57 -1.85 -0.38
AAL21656 (fljA)
-0.97 2.78 0.3 -1.26 -4.68 -6.35 -2.69 1.6 -0.03 -3.33 -0.08 -4.17 -3.55 -2.55 -6.83 - 1.32 4.11 -0.79 -1.15 -4.47 -4.73 - - -3.1 -2.5 -2.02 -0.39 -4.66 -5.48 -1.34 0.46 -5.1 - -5.05 -2.24 -10.05 -4.11 -3.79
AAL21782 (STM2902)
0.13 2.19 -0.0 -0.86 -0.9 -2.98 0.8 0.6 -1.24 0.08 0.48 -1.46 0.03 0.29 1.79 - 0.08 1.15 0.51 1.36 -1.74 0.3 - - -1.9 -1.26 0.33 -0.01 -0.48 -0.22 -1.33 0.13 -0.6 - -1.68 0.3 -9.95 -0.79 0.41
AAL22497 (lpfD)
0.49 1.97 0.59 -0.59 0.24 -3.95 1.1 -1.0 -1.15 -1.16 -0.6 -2.04 0.89 -1.25 1.54 -0.65 -1.67 1.27 1.26 1.9 -2.19 -1.49 -1.76 -3.45 -2.18 -1.36 -2.31 0.5 -1.05 -2.49 -0.56 0.83 -0.61 -1.29 -1.44 -2.49 -3.38 0.45 0.83
AAL22572 (rfaL)
-0.22 2.06 -1.78 0.19 -0.58 0.09 1.02 -0.3 -1.41 -0.28 -1.2 0.77 -1.3 -0.22 1.38 -0.41 1.11 -0.82 -0.4 -0.47 -2.64 -0.8 0.52 0.12 -2.69 -0.79 -0.74 -0.59 -0.91 0.15 -2.19 -0.69 -0.85 -0.54 1.41 -1.06 1.09 -1.36 0.22
AAL22574 (rfaZ)
0.98 1.75 -0.59 -0.57 -0.2 0.36 0.45 -0.23 -1.55 -0.77 -1.25 -0.41 0.45 -0.88 -0.53 -0.16 -1.22 -2.04 -1.57 -1.45 -0.74 0.1 1.21 0.69 -0.28 -0.59 -0.54 0.0 -0.37 0.99 -1.94 -0.08 -0.37 -0.53 -1.12 -0.49 1.92 -0.57 0.2
AAL22575 (rfaY)
0.19 1.79 -1.72 -0.32 -0.42 0.4 1.55 -0.06 -1.92 -0.92 -1.86 -0.69 -1.03 -1.18 1.44 -0.93 0.24 -0.2 -0.31 0.07 -2.79 -1.29 1.03 1.73 -2.56 -1.94 -1.24 -0.89 -0.94 0.33 -2.16 -0.94 -0.89 -0.82 0.68 -1.1 1.86 -1.09 -1.1
AAL22576 (rfaJ)
-0.55 2.17 -0.91 -0.26 -0.58 0.88 0.97 -0.2 -1.19 -0.38 -1.05 -0.28 -0.83 -1.46 0.39 -0.82 -0.06 -0.67 -0.4 -0.13 -2.4 0.02 0.63 1.25 -2.0 -1.04 -0.79 -0.81 -0.48 0.77 -2.12 -0.91 -0.74 -0.9 0.07 -0.77 2.19 -0.85 -1.17
AAL22577 (rfaI)
-0.33 1.54 -0.81 -0.24 -0.38 0.3 0.73 -0.18 -0.62 -0.48 -0.29 -0.35 -0.78 -0.89 0.39 -0.66 0.47 -0.75 -0.45 -0.4 -2.4 -0.17 0.89 1.14 -1.81 -0.53 -0.56 -0.48 -0.26 1.09 -1.3 -0.86 -0.24 -0.53 0.39 -0.76 1.94 -0.7 -0.97
AAL22578 (rfaB)
0.12 1.85 -1.07 -0.64 -0.36 -0.5 0.87 0.01 -0.72 -0.62 -0.37 -0.16 -0.84 -1.01 0.72 -1.14 -0.17 -0.5 -0.39 -0.26 -2.33 -0.08 0.43 1.51 -1.79 -0.67 -0.52 -0.85 -0.67 0.07 -1.59 -0.65 -0.49 -1.28 -0.13 -0.99 2.57 -1.03 -1.14
AAL22579 (yibR)
0.46 2.76 -0.08 -0.79 0.33 -0.22 0.24 -0.16 0.16 -0.08 0.28 0.04 -0.27 -0.5 -1.91 -0.86 -1.85 -1.75 -2.61 -1.82 -0.24 0.57 1.21 -1.2 -0.55 -0.99 -0.24 -0.16 0.17 1.05 -0.77 -0.04 -0.06 -0.83 -1.77 -0.6 -1.11 0.18 -0.67
AAL22703 (STM3845)
0.66 2.87 -0.66 -1.05 -0.52 -3.11 1.74 -0.0 -1.21 -0.61 -0.45 0.24 1.09 -1.21 1.45 -10.07 -0.3 -0.14 -0.33 0.57 -2.86 -1.25 - - -2.11 -1.05 - -0.0 -1.01 1.49 -2.03 0.62 -1.11 - -0.68 - - -0.94 1.39
AAL22704 (STM3846)
1.07 3.52 -0.64 -1.19 -0.2 -2.91 0.99 0.11 -1.26 0.36 -0.71 0.33 -0.48 -0.62 1.2 -9.58 -1.99 -0.99 -0.64 -0.69 -1.55 -0.64 - - -1.65 -1.8 - 0.09 -0.53 1.41 -0.69 0.28 -0.74 - -2.67 - - -1.01 0.93
AAL22983 (STM4155)
1.42 2.41 -1.86 -1.28 0.07 1.06 0.33 -0.49 -2.13 -2.07 -1.17 -0.58 -1.76 -0.92 -1.6 0.15 -0.72 -1.2 -0.69 -0.59 -3.58 0.23 -0.02 1.34 -2.76 -2.18 -1.79 -2.82 -2.39 -2.73 -3.49 -0.64 -2.43 -1.25 -1.03 -2.86 3.23 -0.6 0.19
AAL22984 (STM4156)
1.64 2.36 -3.14 -1.77 -0.06 0.3 -0.0 -0.24 -1.3 -2.8 -0.03 -0.84 -0.8 -0.08 -2.04 0.14 -1.22 -1.79 -1.29 -1.22 -1.23 -2.47 -0.53 1.1 -1.32 -1.12 -2.69 -2.11 -1.94 -0.39 -3.2 -1.11 -1.77 -1.47 -0.91 -2.75 3.29 -0.31 0.69
AAL22985 (STM4157)
0.07 1.87 -1.0 -1.67 -1.89 -0.7 0.6 0.23 -1.19 -0.84 -0.37 -2.62 -1.49 0.45 0.7 1.85 0.59 -0.9 -1.18 -0.56 1.4 2.46 0.18 -2.01 1.05 -0.29 - -1.07 -1.24 -1.1 -2.69 -1.28 -1.46 -0.68 0.11 - -1.88 -1.48 -0.29
AAL23028 (STM4204)
0.44 1.54 -0.81 -0.3 -0.15 -2.16 0.44 0.05 0.9 -0.47 1.41 0.01 -1.19 -0.28 0.59 -9.08 1.88 0.19 0.51 0.75 -2.82 -1.28 - - -1.55 0.56 0.2 -0.13 -0.28 0.9 -1.48 -0.64 -0.23 - 0.65 -0.54 -9.32 -0.25 -0.32
AAL23313 (STM4495)
-0.23 2.02 -0.45 0.25 0.22 -0.04 1.66 0.26 -0.08 0.43 -0.44 0.89 -0.25 -0.47 2.4 -10.73 0.01 -0.16 0.06 0.36 -2.58 -0.44 - - -2.52 -0.74 - -0.32 -0.3 -1.51 -1.18 0.68 -0.25 - 0.28 - - -0.78 0.45
AAL23342 (hsdS)
-0.39 2.44 -1.57 -0.21 -0.59 -0.97 1.38 0.33 -1.44 -0.02 -1.22 0.5 -1.26 -0.28 2.47 -12.51 -0.24 -0.09 -0.14 0.18 -1.04 -0.27 - -1.82 -1.32 -0.84 0.18 0.06 -0.4 -1.58 -1.92 -0.43 -0.89 - 0.7 0.28 0.15 -0.64 -0.28
AAL23445 (repC)
-0.54 1.31 0.05 0.04 -0.61 -3.37 1.63 0.59 -3.43 -0.27 -3.25 -1.89 0.48 -0.92 1.84 -0.39 0.14 1.16 1.2 1.77 -2.34 -0.89 -0.14 -2.08 -1.6 -1.63 - -0.62 -1.57 0.13 0.38 0.19 -1.33 -0.4 0.45 - -1.97 -0.26 0.15
AAL23505 (traS)
-0.38 1.1 0.78 -0.75 0.35 -1.76 0.7 0.54 -1.8 0.41 -1.96 -2.89 1.03 0.99 0.75 -10.9 0.11 1.19 0.85 1.47 -1.55 0.15 - - 0.09 -1.74 - -0.3 -1.06 -3.72 0.2 0.86 -1.42 - -1.13 - - 1.11 1.74

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.