Heatmap: Cluster_60 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL20840 (flhC)
-0.31 0.28 0.03 -0.36 -1.07 -1.85 -0.87 -0.22 0.6 0.88 0.51 -0.23 -0.63 0.42 0.56 0.77 -1.23 0.54 0.09 0.8 -1.29 -0.21 -0.82 -0.99 -0.6 0.03 0.6 0.3 0.23 -1.67 0.43 -0.42 0.6 0.86 -0.79 -0.32 0.21 -0.8 -0.41
AAL20841 (flhD)
-0.53 -0.25 0.07 -0.56 -0.9 -2.66 -0.14 -0.05 0.72 0.81 0.65 -0.62 -0.33 0.7 0.53 1.05 -1.48 0.52 0.47 1.01 -2.25 -1.17 -0.21 -1.96 -1.67 -0.2 -0.39 0.71 0.12 -1.17 0.71 -0.0 0.3 1.36 -0.94 -1.1 -0.68 -0.62 -0.26

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.