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Heatmap: Cluster_2 (HCCA)

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Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL19071 (yabK)
 19.07 35.53 6.61 9.92 4.1 2.45 4.38 49.42 12.32 6.88 24.49 16.06 6.61 133.33 4.15 5.45 5.38 4.89 4.45 4.72 18.47 30.65 1.07 26.43 13.72 54.68 13.23 7.48 25.23 5.3 2.51 4.26 23.58 1.02 9.82 15.35 32.29 5.6 4.89
AAL19072 (tbpA)
 31.03 58.88 18.55 23.73 12.54 5.37 29.69 93.32 29.65 26.25 31.86 35.76 28.12 246.17 56.89 29.55 28.9 43.05 39.11 51.01 51.61 40.44 5.61 52.56 47.56 142.02 28.27 18.96 41.07 5.33 8.91 13.5 40.75 6.16 75.61 43.31 72.35 16.09 23.03
AAL19156 (fhuC)
 84.41 43.85 28.38 11.03 4.02 33.02 39.51 124.5 7.15 3.18 13.95 2.45 26.28 338.86 1.59 31.8 15.62 7.03 12.86 10.95 50.85 106.51 1.6 66.4 25.41 38.76 53.35 13.71 16.08 7.87 2.97 8.92 3.11 1.19 18.28 59.83 109.11 32.75 8.01
AAL19157 (fhuD)
 56.18 42.18 13.83 7.4 2.83 27.95 47.32 107.21 7.63 3.45 13.64 1.54 11.93 279.74 1.98 19.04 19.03 7.21 10.06 8.51 48.5 106.82 3.7 62.25 22.3 27.71 30.86 5.76 11.53 4.34 3.4 7.02 2.72 2.88 25.58 36.29 78.67 12.93 5.59
AAL19158 (fhuB)
 47.6 43.4 9.09 7.78 3.74 28.04 21.86 76.11 7.96 2.79 16.66 3.54 7.45 190.82 1.81 7.2 12.79 2.82 3.6 3.55 24.5 64.72 0.85 35.78 12.36 18.35 21.39 5.95 10.51 5.54 2.21 5.51 3.24 0.88 18.55 22.12 49.02 6.81 5.53
AAL19541 (fepC)
 64.54 26.66 23.93 8.9 10.13 18.92 25.32 60.38 25.49 6.95 38.04 6.8 23.55 123.43 3.86 15.52 8.78 8.39 8.74 10.2 12.11 19.64 5.21 23.74 11.28 23.25 37.81 18.66 13.15 4.77 12.83 19.81 10.47 3.59 8.23 43.41 46.74 13.38 24.76
AAL19542 (fepG)
 60.27 26.85 8.52 3.92 2.59 5.44 7.54 60.37 14.74 2.77 28.87 4.5 6.34 141.4 1.01 3.9 3.65 2.46 2.91 3.05 7.5 20.95 0.9 25.67 5.53 17.7 24.11 9.19 6.66 2.24 2.97 4.33 3.96 1.35 3.86 27.86 32.38 4.56 8.93
AAL19543 (fepD)
 89.7 30.14 8.15 3.63 1.93 5.4 8.19 52.36 8.58 1.59 25.31 1.88 5.42 109.38 0.55 2.41 4.09 2.17 2.85 2.44 12.19 20.04 0.28 21.99 14.3 17.56 23.59 10.13 6.08 2.6 3.78 11.8 2.82 0.49 3.65 31.55 45.41 2.1 21.66
AAL19544 (ybdA)
 48.48 32.78 4.99 3.68 1.41 4.23 26.35 35.12 4.67 1.33 11.88 2.06 4.2 81.36 1.86 2.7 12.37 6.31 7.35 7.16 4.52 11.39 0.44 51.31 4.84 13.78 26.01 4.61 2.06 1.87 1.52 6.01 2.02 0.59 13.29 33.81 71.56 1.89 12.78
AAL19731 (bioB)
 33.83 78.79 35.71 7.9 1.5 55.13 1.94 145.68 3.3 2.69 4.32 1.31 14.89 338.28 2.47 43.4 2.15 3.09 2.84 3.0 69.08 163.73 1.96 33.05 4.77 120.15 36.26 19.52 22.0 0.44 0.99 3.85 8.31 0.56 4.99 4.7 61.15 16.69 2.39
AAL19732 (bioF)
 11.85 49.66 14.34 4.63 0.7 28.58 0.43 85.99 1.75 1.6 2.31 1.57 7.11 273.07 0.4 13.11 0.67 0.46 0.83 0.71 48.83 97.61 0.55 12.49 2.69 58.86 26.02 5.31 15.85 0.24 0.49 1.84 6.11 0.28 1.26 3.43 21.88 9.8 0.9
AAL19733 (bioC)
 6.92 31.59 7.75 3.47 0.75 10.83 1.31 52.99 4.26 1.77 7.46 0.77 4.82 171.43 0.78 7.25 1.64 1.49 1.22 1.48 25.11 29.09 0.27 15.43 2.2 28.24 18.12 3.65 10.31 0.24 0.56 2.34 4.05 0.38 2.92 3.37 28.85 6.29 1.39
AAL19734 (bioD)
 11.1 46.54 30.52 5.17 2.32 81.19 0.76 93.3 4.66 3.05 8.35 1.25 11.83 201.47 1.63 18.5 1.47 1.05 1.5 1.27 58.32 54.17 0.66 13.24 5.73 62.66 24.28 3.88 18.97 0.68 1.7 5.84 7.54 0.39 2.93 3.3 25.57 13.54 3.76
AAL19813 (potF)
 31.24 35.15 40.27 17.06 8.83 194.52 27.68 186.89 8.36 10.33 9.72 2.54 47.16 268.56 4.82 18.32 27.79 36.32 34.02 39.44 73.27 14.26 6.26 68.14 50.95 49.51 14.69 11.45 24.13 2.1 5.61 5.82 20.5 9.11 84.41 5.23 115.3 25.52 11.38
AAL19814 (potG)
 24.19 26.01 16.24 9.88 5.46 69.71 8.22 122.44 4.17 6.2 4.4 1.31 25.68 216.55 4.95 9.12 9.14 16.98 11.6 15.7 49.92 13.14 3.62 44.02 24.26 23.24 7.21 5.87 13.88 1.75 4.59 3.69 12.37 4.44 26.34 2.78 70.08 18.19 5.06
AAL19815 (potH)
 9.41 21.52 8.04 4.4 3.74 27.19 7.71 62.19 5.66 4.47 6.51 2.36 11.62 104.97 4.45 6.86 6.79 9.68 6.55 8.32 17.97 8.07 2.53 46.57 9.15 8.52 3.55 3.47 5.26 1.48 3.04 2.94 4.48 3.43 11.66 2.78 64.72 7.61 4.37
AAL19816 (potI)
 15.86 33.62 24.07 10.03 12.32 70.73 8.9 119.67 10.05 7.31 6.26 5.35 32.66 236.43 4.23 6.54 8.49 9.18 9.76 12.59 50.53 12.27 1.73 37.7 23.23 15.97 8.61 10.83 13.58 2.35 7.6 9.05 13.62 2.79 13.69 6.51 57.41 20.07 12.99
AAL20245 (ydjN)
 159.96 160.17 70.03 79.16 17.59 178.65 279.59 730.4 27.39 50.86 34.13 27.59 62.53 1543.17 19.0 34.15 16.02 21.16 19.73 25.6 48.22 188.99 11.23 370.48 306.37 473.54 208.42 112.68 128.43 6.59 22.28 19.54 192.76 12.93 28.46 386.63 138.02 140.62 26.23
AAL20619 (yciW)
 22.11 33.7 9.67 9.71 4.79 13.87 57.96 72.3 8.43 10.9 16.24 3.92 14.57 122.8 9.64 5.83 4.17 10.84 8.23 10.79 17.16 54.58 3.77 37.21 25.35 74.89 14.71 22.16 25.0 0.52 3.03 5.2 40.26 5.32 19.52 49.53 46.85 11.32 10.21
AAL21048 (yegW)
 55.31 93.8 48.67 39.25 25.08 8.95 22.62 121.82 49.09 47.89 74.6 35.32 42.43 236.07 18.81 47.98 16.09 26.77 27.45 33.2 99.04 119.72 20.15 35.55 104.98 77.74 30.12 45.81 107.07 9.35 53.7 34.54 97.44 26.72 15.07 36.94 47.4 33.59 42.88
AAL21049 (thiD)
 48.7 86.11 26.8 43.25 10.12 3.73 8.21 160.32 35.5 15.63 79.0 9.18 16.25 410.49 19.33 44.96 21.1 36.73 27.78 32.36 233.98 138.07 1.58 23.78 185.94 179.17 7.61 16.29 147.98 4.71 14.46 7.73 107.62 2.74 50.06 7.49 42.09 17.51 9.96
AAL21050 (thiM)
 47.07 59.96 9.94 42.61 6.41 2.19 5.87 92.63 25.49 11.99 53.85 7.65 10.73 272.9 5.92 17.7 9.64 9.55 10.31 10.61 169.79 85.44 0.91 12.25 172.7 149.12 8.31 11.98 145.59 2.17 5.12 6.58 117.82 1.82 24.96 8.2 21.98 6.39 10.57
AAL21165 (yojI)
 33.22 28.63 23.5 10.34 8.26 7.53 32.53 54.9 14.74 4.77 26.12 2.34 28.63 126.69 3.94 11.95 40.04 26.82 34.13 31.11 22.28 26.33 4.1 47.97 14.81 35.92 29.17 13.41 12.52 4.43 7.42 14.68 7.79 5.16 67.07 29.87 74.48 13.08 32.53
AAL21324 (cysK)
 389.21 665.41 409.64 498.43 94.63 700.01 2556.24 2634.53 72.86 609.71 65.97 92.6 384.36 2308.0 280.54 133.38 83.81 112.57 114.89 122.86 313.5 1265.83 51.67 1192.66 1079.19 1783.22 438.74 642.5 748.46 19.14 78.41 133.63 882.14 54.56 273.67 1062.0 613.17 582.7 147.85
AAL21333 (yfeL)
 29.76 38.14 18.83 14.33 12.26 14.75 40.33 132.42 19.5 10.38 33.59 7.09 25.44 188.8 45.75 0.02 8.81 20.13 20.46 25.39 23.39 57.74 0.0 0.0 23.88 30.99 0.0 22.86 18.63 3.6 12.84 15.29 21.64 0.0 23.59 0.0 0.0 19.56 17.45
AAL21334 (cysM)
 77.64 64.53 35.26 52.45 23.23 49.15 95.76 453.58 30.78 27.17 42.4 25.17 50.77 811.03 44.88 23.96 58.22 54.85 68.24 59.28 60.69 71.93 7.71 75.89 130.41 196.61 48.05 47.91 78.38 11.23 23.6 24.99 71.83 6.8 107.22 33.86 79.02 58.48 52.14
AAL21335 (cysA)
 105.51 101.46 72.13 63.9 3.18 89.15 163.4 656.23 5.13 76.37 5.63 2.17 74.07 1081.22 2.65 41.96 4.22 5.0 4.53 5.63 141.51 237.32 2.94 192.21 426.15 246.19 76.01 87.75 128.1 1.13 3.89 4.08 116.97 1.9 63.27 113.62 86.66 233.41 6.47
AAL21336 (cysW)
 73.4 96.5 34.73 48.21 2.51 47.13 207.53 528.27 4.11 30.62 4.67 2.3 48.02 874.6 5.3 11.04 5.03 6.07 5.93 7.48 38.85 257.77 3.54 126.75 231.06 278.76 48.37 63.24 72.06 0.75 2.76 2.93 118.17 1.65 46.24 65.25 126.63 89.58 4.41
AAL21337 (cysU)
 49.89 85.82 60.11 37.07 9.42 30.28 80.51 417.34 28.12 39.39 28.12 2.78 59.97 614.45 13.53 7.03 5.92 13.77 11.74 16.47 26.96 177.56 2.51 106.6 225.27 198.37 44.14 76.39 74.07 14.92 23.45 18.98 121.36 1.83 11.13 74.82 85.08 102.11 16.17
AAL21338 (cysP)
 56.93 111.28 115.61 51.05 4.5 61.55 326.16 632.51 5.34 97.6 6.88 1.56 95.5 888.29 5.25 10.42 4.2 8.69 8.11 9.72 44.4 311.66 5.83 187.99 732.66 504.98 91.53 141.63 107.41 0.48 6.82 9.81 182.22 4.33 24.26 245.33 166.56 184.11 12.88
AAL21812 (ygbE)
 39.25 126.77 30.79 23.93 8.37 47.47 134.31 247.33 20.61 22.54 33.44 17.86 48.14 264.21 21.25 41.36 17.43 16.55 17.55 19.6 109.79 259.86 25.47 102.74 137.47 95.81 41.47 85.88 28.99 28.11 16.58 13.38 59.36 27.84 13.58 54.27 94.66 38.93 18.06
AAL21813 (cysC)
 93.84 109.99 45.38 49.56 6.28 61.24 109.04 359.57 13.13 39.61 23.35 5.06 40.28 479.26 6.92 14.29 3.72 5.79 4.01 5.86 95.83 241.94 3.23 148.7 150.72 345.15 47.25 72.67 79.7 4.66 6.79 10.16 157.9 3.43 9.49 99.06 85.43 87.63 16.15
AAL21814 (cysN)
 103.68 137.61 77.25 79.65 7.98 95.26 359.62 590.28 15.13 65.2 20.3 7.16 51.38 935.78 13.18 17.81 8.42 10.99 10.34 13.1 112.59 234.51 4.56 182.82 282.08 537.36 88.8 181.29 135.95 1.15 9.59 13.41 273.58 4.29 18.19 202.2 123.07 173.8 16.46
AAL21815 (cysD)
 144.13 109.29 51.09 134.28 2.92 135.06 740.14 684.43 5.53 76.98 9.61 2.06 36.61 1208.27 7.19 14.53 2.12 5.03 4.52 5.78 84.96 231.11 2.9 205.55 798.99 651.25 97.09 253.13 264.27 0.68 3.22 3.11 480.55 2.74 13.65 325.57 182.31 102.46 4.7
AAL21826 (cysH)
 140.49 103.2 64.92 54.08 3.84 293.31 175.36 812.17 6.65 37.01 9.28 3.64 107.56 1049.35 9.48 60.55 2.43 6.31 5.99 7.03 113.45 80.55 2.42 105.61 130.83 314.15 77.97 143.08 63.58 0.44 2.99 2.92 71.89 2.38 39.95 53.4 84.05 180.71 4.46
AAL21827 (cysI)
 106.94 116.87 57.38 73.49 3.21 123.05 179.34 896.56 6.64 47.9 7.27 4.56 72.95 1349.25 13.42 31.26 3.4 8.71 7.48 8.33 99.6 130.36 2.12 119.68 183.11 615.96 79.33 164.51 84.8 1.07 3.79 2.67 139.99 2.0 56.36 56.51 88.52 165.68 4.85
AAL21828 (cysJ)
 61.08 82.06 26.99 50.08 2.38 70.74 90.91 608.27 4.54 29.53 4.89 3.62 36.72 1194.22 8.37 11.1 1.04 2.78 2.83 3.35 50.49 86.75 1.34 102.48 155.16 522.27 74.03 161.43 83.97 0.34 3.02 2.59 154.55 1.73 9.15 55.81 76.41 53.14 6.45
AAL21869 (recD)
 16.91 38.1 24.89 24.25 24.69 33.36 15.49 58.56 20.55 25.23 21.19 39.45 22.18 99.8 22.04 8.87 11.89 10.52 10.49 12.99 25.0 36.05 8.23 33.27 12.86 25.26 27.31 19.28 29.03 3.76 15.61 29.67 29.78 4.66 13.74 26.56 43.65 18.97 31.11
AAL22420 (livF)
 38.19 23.91 21.3 16.62 6.79 58.58 5.28 114.34 6.57 5.71 6.6 4.13 20.14 97.28 7.01 3.32 9.44 9.98 10.1 13.83 16.22 7.59 0.53 27.41 9.56 9.35 9.54 9.65 26.22 1.47 3.57 5.87 16.29 1.61 11.51 6.02 53.88 11.12 8.64
AAL22421 (livG)
 27.33 20.33 16.56 14.71 5.25 39.82 4.21 113.55 6.03 6.52 5.96 2.86 15.71 90.08 6.64 4.73 10.07 11.55 8.84 12.34 10.56 11.03 1.4 30.28 7.73 8.52 9.32 8.2 21.98 1.59 4.55 4.89 15.78 3.09 11.02 5.35 74.99 9.99 8.29
AAL22422 (livM)
 11.46 23.25 9.3 7.66 3.12 30.91 2.67 57.35 5.66 4.12 6.63 2.79 10.07 52.97 3.23 4.27 3.5 4.92 5.18 6.45 6.66 8.77 1.34 39.39 6.5 7.3 6.58 6.2 16.65 0.8 3.0 3.7 12.24 2.32 4.42 4.51 50.29 4.84 6.32
AAL22423 (livH)
 11.63 19.68 12.75 6.67 3.48 21.55 3.95 57.87 6.49 4.53 8.37 2.83 11.65 46.91 5.06 4.65 4.98 7.82 9.25 9.04 10.23 16.5 1.4 37.25 9.67 8.04 7.2 6.08 12.02 0.55 3.97 4.78 12.18 2.29 6.53 4.74 73.39 4.39 7.78
AAL22424 (livK)
 19.26 29.74 15.4 11.93 6.19 38.92 11.89 56.33 8.46 9.63 12.74 2.24 26.47 35.59 11.09 11.09 9.58 28.47 26.72 30.48 9.54 12.52 3.32 41.94 12.17 11.03 10.78 9.27 12.13 0.98 6.19 6.36 11.75 8.6 11.84 6.95 93.89 8.06 13.77
AAL22807 (yigM)
 55.08 40.6 19.62 9.96 5.73 7.35 7.41 66.7 11.2 4.31 21.6 7.64 17.85 143.22 8.27 14.63 9.12 6.06 6.1 7.43 19.3 30.62 4.32 40.62 15.17 35.27 50.13 16.14 25.46 1.42 4.59 10.14 20.66 3.89 22.85 11.23 82.1 13.05 14.49
AAL22880 (STM4041)
 55.8 37.63 15.86 12.63 18.51 4.43 38.33 46.61 9.52 5.02 15.64 12.01 14.74 63.08 15.15 11.2 20.47 4.17 6.93 6.59 3.02 42.89 1.41 40.3 22.79 15.28 18.37 19.02 21.1 4.95 20.29 19.85 23.11 1.78 39.75 14.54 69.84 12.61 29.19
AAL22881 (STM4042)
 106.76 34.44 11.9 17.08 13.63 7.22 34.89 76.56 17.15 8.32 31.76 11.2 10.78 134.83 11.43 7.38 20.87 5.0 7.9 6.55 4.43 30.06 2.16 29.43 34.9 28.2 16.37 23.48 29.97 5.89 18.41 18.84 35.74 1.94 37.62 15.82 60.42 9.46 22.9
AAL22987 (thiH)
 87.21 141.16 26.34 47.5 14.91 14.41 8.09 323.2 16.22 17.66 26.85 4.64 27.54 1152.92 9.81 100.32 8.26 6.96 6.82 9.1 239.21 346.15 2.59 43.26 122.93 483.65 6.48 12.19 167.59 2.24 4.68 12.09 93.51 2.49 44.31 7.32 87.59 17.19 10.44
AAL22988 (thiG)
 78.76 114.18 21.66 60.2 10.24 11.56 3.38 246.82 12.18 17.59 15.98 5.65 22.53 935.52 3.25 23.38 5.67 4.0 5.23 5.63 247.18 260.44 0.5 23.81 119.78 531.38 5.52 7.8 184.75 1.72 2.65 7.71 97.68 0.32 22.13 5.41 35.63 13.21 7.16
AAL22989 (STM4161)
 200.95 102.69 39.47 38.09 16.54 5.24 0.8 421.2 13.28 18.96 11.92 7.73 44.48 1329.57 0.0 42.53 0.73 0.0 0.92 2.67 173.24 308.42 1.74 10.19 50.34 772.38 6.58 14.27 120.33 1.31 1.72 22.59 84.57 0.0 6.03 11.08 5.76 28.03 20.79
AAL22990 (thiF)
 80.91 122.67 13.02 54.08 7.48 3.72 3.08 254.94 12.06 14.42 12.33 4.72 15.82 1101.56 2.31 3.44 7.17 3.69 4.39 4.82 108.93 356.35 0.02 11.31 43.24 496.39 2.03 6.47 151.59 1.91 2.33 5.6 102.49 0.01 31.07 1.59 29.42 10.85 6.2
AAL22991 (thiE)
 72.02 111.82 14.25 39.07 7.79 3.35 4.98 247.44 10.96 13.95 11.66 5.83 17.47 954.15 6.32 48.55 7.57 7.18 6.94 7.9 131.98 319.43 0.78 18.12 44.72 533.69 5.88 7.63 126.02 0.96 1.22 6.48 84.53 0.33 33.51 6.26 38.64 12.31 9.07
AAL22992 (thiC)
 146.25 124.35 12.02 41.21 7.1 2.96 5.24 243.15 13.48 12.54 24.41 5.66 18.47 1004.01 6.96 81.18 9.72 6.41 6.14 7.29 136.81 274.77 1.66 25.52 66.19 536.08 7.01 12.09 122.59 1.62 3.17 7.01 81.91 1.88 98.66 8.44 43.08 9.17 10.89

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)