Heatmap: Cluster_62 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL21008 (cpsG)
-0.91 2.29 -0.18 -0.06 -1.26 0.03 -1.1 -0.71 -0.95 -1.95 -0.94 -2.62 -0.14 -0.46 -3.05 -3.7 -2.19 -1.8 -1.39 -1.29 -0.61 -1.94 -6.68 1.85 -0.23 0.4 2.31 -1.35 -0.65 -4.21 -2.83 -1.49 -0.09 -4.25 -1.82 -0.52 3.02 -0.27 -1.21
AAL23193 (yjfK)
-0.39 1.33 -0.8 -0.96 -1.43 -2.31 -0.87 0.14 -0.18 -0.93 0.18 -2.6 -0.79 -0.12 -0.4 -1.17 0.01 -0.42 -0.16 -0.13 -3.21 -2.09 -1.5 2.27 -1.03 -1.12 -0.44 -1.09 -1.34 -2.52 -2.41 -1.17 -1.16 -0.94 0.14 -1.1 3.43 -0.63 -0.69

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.