Heatmap: Cluster_52 (HCCA)

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL19380 (phnV)
55.1 25.99 26.69 6.96 10.27 2.7 13.35 21.37 13.56 4.32 17.96 10.14 11.11 24.57 7.8 8.43 6.84 12.85 13.58 13.71 4.86 7.25 3.59 39.51 5.75 9.79 9.07 14.11 10.72 1.68 6.92 10.83 11.74 4.02 24.24 6.2 54.77 8.65 16.47
AAL21181 (STM2280)
28.31 27.05 2.97 5.2 4.55 2.39 6.09 10.53 8.51 3.51 14.03 3.12 4.94 15.32 9.16 6.2 8.5 4.22 5.56 6.37 1.1 9.3 10.31 52.6 2.79 5.78 5.56 11.52 6.65 2.96 6.01 6.22 6.7 4.99 82.65 3.11 66.29 3.16 4.3

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)