Heatmap: Cluster_67 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL22131 (STM3259)
-2.93 1.49 - - - - -2.14 0.01 -0.39 - -0.34 -1.18 - -0.17 -0.58 0.95 -0.94 - - - - 1.02 1.9 2.42 -4.65 - -0.55 - - - -1.43 - - 1.42 0.6 -0.68 3.56 - -
AAL22132 (STM3260)
-2.27 1.74 -4.42 -5.95 -5.73 -4.53 -1.28 0.15 0.19 -4.55 0.63 -1.33 -4.95 -0.37 -1.17 0.37 -0.29 - -8.74 -10.35 -4.82 0.69 0.93 2.76 -3.26 -4.86 0.04 -4.95 -6.76 -2.88 -1.19 -5.58 -6.85 0.11 0.8 0.06 3.49 -6.47 -4.71
AAL22685 (torS)
0.18 0.79 -0.7 -0.76 -0.75 -3.31 -0.66 0.19 -0.56 -0.93 0.21 0.05 0.25 -0.15 0.53 0.31 -1.28 -0.43 -0.42 -0.12 -1.91 -0.66 0.94 1.66 -1.21 -1.44 -0.69 -0.22 -0.31 -2.12 -0.4 0.32 -0.26 0.54 -0.38 -0.75 2.04 -0.81 0.85

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.