Heatmap: Cluster_49 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

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Gene	ATCC_14028	SL1344	ATCC_14028,E-stationary,WT	14028s	ATCC_14028,Log,rpsL*_mut	14028s,mLPM	opgGH_mut	LT2	Florfenicol	NCTC_12023,37_C	Chlortetracycline	SL1344,NarS_defic	ATCC_14028,E-stationary,rpsD*_mut	LT2,ridA	fliA_del	High-patho	LT2,Cell_susp_cult	14028s,hilC_del,pBAD24	14028s,sprB_del,pBAD24	14028s,pBAD24	gastro	hfq_mut	Low-patho,42C	plank_cells	ATCC_14028,gastro	Typh_14028s,Expo_phase	biofilm,cpxR_mut	14028s,typhoid	14028s,rtcR	Typh_14028s	infection	ATCC_14028,Log,WT	14028s,rtcB	High-patho,42C	LT2,Cell_susp_cult,Rho_Y80C	plank_cells,cpxR_mut	biofilm	ATCC_14028,E-stationary,rpsL*_mut	ATCC_14028,Log,rpsD*_mut
AAL19023 (citD2)	2.96	24.95	1.74	2.57	3.26	1.16	1.16	6.96	9.87	3.57	10.56	0.77	1.47	2.15	0.36	2.71	2.98	1.04	1.6	2.5	0.8	1.63	26.56	28.95	2.49	1.9	4.61	2.6	1.17	0.15	0.79	2.17	1.77	19.94	3.88	3.66	51.69	4.69	2.56
AAL19024 (citE2)	1.19	11.51	1.75	2.23	2.66	1.63	1.15	10.42	10.47	4.49	10.1	1.0	1.77	4.01	1.74	1.56	3.16	3.44	2.86	3.07	1.46	1.83	27.96	27.49	1.76	2.91	3.55	1.79	1.29	0.24	1.29	2.39	1.32	18.0	3.53	3.0	69.73	3.05	1.61
AAL19025 (citF2)	2.17	12.59	3.14	2.23	2.98	1.25	2.21	7.64	8.11	4.33	7.91	1.35	3.53	3.79	1.89	2.91	2.25	2.15	2.6	3.2	1.17	2.7	30.14	30.55	2.51	2.58	3.52	2.07	1.99	0.33	1.83	2.98	1.7	20.64	2.56	2.65	63.11	3.64	3.2
AAL19026 (citX2)	1.95	16.86	3.64	2.21	3.67	1.37	0.93	6.16	6.67	3.6	4.73	0.73	3.3	3.26	1.17	1.34	2.59	1.77	1.95	2.4	3.1	3.78	13.27	14.38	2.33	1.93	3.68	2.53	1.88	0.25	1.77	3.63	2.1	9.95	2.84	2.77	33.62	4.91	2.44
AAL22130 (STM3258)	1.36	19.63	0.0	0.0	0.0	0.0	3.49	6.22	6.57	0.0	8.59	3.61	0.0	4.52	3.82	10.23	3.88	0.0	0.0	0.0	0.0	14.69	11.81	11.61	0.53	0.0	6.07	0.0	0.0	0.0	3.08	0.0	0.0	9.31	8.08	8.86	21.72	0.0	0.0

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)