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Heatmap: Cluster_47 (HCCA)

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(Showing raw values)

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Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL19012 (slpA)
 177.86 164.92 130.04 165.14 191.57 141.74 104.91 225.89 178.12 136.25 126.12 252.67 193.08 293.92 107.18 68.4 73.95 91.82 96.69 103.79 83.12 141.39 69.88 176.46 83.84 151.67 190.23 184.06 221.58 28.44 82.06 205.81 202.66 42.14 65.28 152.71 192.77 157.18 238.18
AAL19013 (lytB)
 115.29 118.93 63.21 107.96 93.74 92.93 94.13 138.94 84.46 71.95 56.38 149.45 90.13 221.38 135.23 36.5 64.52 73.3 85.02 91.33 56.14 84.43 30.8 134.22 51.41 106.17 123.85 96.56 127.71 13.89 37.28 108.11 127.22 20.22 89.78 86.23 171.36 70.72 133.87
AAL19087 (murE)
 82.14 115.62 167.98 94.66 134.92 110.02 134.43 246.66 83.64 106.95 53.73 170.78 134.65 398.72 157.27 49.32 173.67 110.48 112.71 130.07 47.65 61.65 32.45 117.96 48.16 163.98 108.86 137.22 133.14 22.37 94.59 133.2 100.0 20.72 194.16 95.78 110.48 133.5 141.32
AAL19088 (murF)
 80.54 114.62 131.37 97.24 111.23 177.28 71.88 174.29 83.33 104.95 65.1 163.69 93.88 299.0 110.43 50.93 73.61 44.79 46.51 55.01 46.0 106.53 38.14 104.03 46.67 176.88 75.64 105.89 127.05 33.67 68.56 104.99 97.9 25.38 70.77 69.14 93.14 93.52 110.4
AAL19092 (murG)
 89.92 121.21 117.45 94.85 91.37 213.05 55.47 131.05 86.64 97.19 78.1 175.76 97.95 213.83 82.83 35.63 85.93 43.5 54.2 56.31 63.28 105.48 21.65 106.34 60.22 138.81 122.2 85.52 107.15 24.95 61.11 110.22 106.62 16.3 78.31 99.78 85.65 66.8 115.18
AAL19093 (murC)
 97.29 122.57 116.52 143.83 114.53 362.95 86.59 194.78 128.3 114.28 110.7 198.17 119.16 307.65 175.5 73.86 86.21 54.33 58.68 67.15 46.91 102.33 48.96 110.5 57.92 168.85 120.43 130.42 158.86 27.72 93.67 130.47 141.17 39.17 94.38 101.68 108.5 74.08 138.72
AAL19094 (ddlB)
 101.87 150.09 143.59 160.12 100.69 326.76 122.13 192.16 171.34 161.53 162.45 155.48 123.19 206.53 139.46 136.69 101.95 94.35 109.03 144.72 59.52 106.4 101.25 100.94 62.0 142.15 99.48 155.67 155.79 58.87 157.84 105.79 140.81 98.58 101.41 119.31 87.39 104.49 126.09
AAL19095 (ftsQ)
 142.69 124.28 128.35 88.12 78.61 131.42 160.29 186.81 151.34 84.11 160.42 90.64 130.11 168.85 104.24 131.59 147.65 101.65 107.73 132.92 39.35 116.43 100.22 88.09 42.58 93.07 68.38 117.55 79.62 25.83 77.53 110.13 81.34 132.85 175.25 63.93 126.19 95.79 115.66
AAL19096 (ftsA)
 123.02 173.05 160.45 159.23 142.24 250.3 172.69 235.28 205.85 164.5 214.4 137.57 193.32 268.13 221.55 124.07 149.02 134.35 134.77 175.11 86.1 167.63 101.89 126.06 74.08 154.42 149.87 159.62 173.05 79.71 144.46 185.55 160.17 111.04 143.39 131.21 150.75 145.36 197.86
AAL19097 (ftsZ)
 244.12 380.82 655.94 616.15 398.73 1720.77 180.75 423.41 466.64 530.14 392.39 466.96 550.8 669.18 194.56 163.93 96.35 195.11 191.23 246.27 288.19 342.98 111.03 224.8 214.49 499.61 408.17 487.14 532.38 54.27 327.24 450.52 458.09 99.98 80.06 323.86 253.92 426.24 513.44
AAL19116 (aceE)
 793.82 518.92 302.99 663.43 195.79 580.01 746.75 417.33 510.27 397.81 403.31 191.13 284.2 614.08 1457.09 149.55 99.67 311.59 402.76 372.23 104.37 344.31 89.9 444.87 76.03 555.88 479.6 549.81 217.64 55.91 605.04 386.95 185.79 75.27 64.5 322.22 357.86 267.91 199.58
AAL19117 (aceF)
 714.66 515.49 298.76 553.41 163.88 621.53 406.89 287.81 539.66 356.39 329.66 227.24 293.5 455.28 650.5 134.04 103.14 150.06 200.66 184.14 129.97 453.31 51.0 478.33 83.72 561.06 472.77 405.27 260.72 51.59 417.35 339.93 196.51 51.11 67.81 358.41 337.11 219.84 161.57
AAL19179 (map)
 177.46 123.49 94.39 110.23 115.72 58.11 139.68 172.22 121.36 118.65 140.27 144.08 144.0 233.85 96.34 60.05 53.01 72.57 80.51 85.01 51.3 90.93 58.5 141.05 76.99 188.76 122.28 192.34 174.74 71.16 89.15 180.93 156.6 47.92 66.95 149.83 167.86 78.19 234.13
AAL19184 (dxr)
 71.59 61.74 26.19 59.73 39.34 25.74 52.67 70.12 51.27 47.81 55.93 106.64 49.05 102.51 33.54 31.55 22.5 46.75 55.37 53.39 23.74 40.16 30.27 71.08 37.89 79.96 74.16 76.5 82.73 29.54 46.25 46.24 88.73 26.38 24.65 43.19 85.91 33.12 79.52
AAL19190 (lpxD)
 372.61 323.95 301.12 369.2 422.45 267.05 526.77 402.95 216.98 256.4 189.47 570.68 400.2 438.85 655.76 182.8 299.27 298.3 281.96 351.63 154.42 628.02 248.16 285.38 102.76 323.79 280.17 315.44 285.55 115.5 129.02 468.74 305.55 125.39 405.73 252.58 226.84 273.8 505.44
AAL19191 (fabZ)
 400.96 279.8 169.67 438.61 248.8 383.54 301.76 295.12 279.28 310.04 304.7 594.61 239.08 419.44 279.11 211.56 123.05 237.17 258.04 307.28 154.41 267.89 276.82 317.65 115.13 404.06 382.2 344.69 496.42 96.91 152.62 227.63 479.12 188.63 123.35 361.77 265.91 161.16 335.93
AAL19192 (lpxA)
 296.5 266.43 186.28 339.86 255.82 396.95 135.85 303.57 253.88 244.88 235.29 509.24 224.77 468.65 171.3 137.88 84.15 166.95 193.43 193.11 146.82 286.4 171.74 313.15 100.13 392.75 381.76 291.24 418.66 88.75 132.95 209.92 458.64 119.9 78.58 356.61 253.28 197.69 310.96
AAL19193 (lpxB)
 100.56 102.02 48.58 110.53 53.99 78.46 122.28 110.92 46.33 77.94 60.64 114.59 64.75 128.16 205.68 19.08 133.45 124.76 134.99 150.06 41.18 166.87 19.92 120.08 29.41 83.57 63.41 67.28 107.17 25.54 17.72 62.28 105.14 13.18 131.77 59.22 137.47 41.61 90.06
AAL19194 (rnhB)
 119.31 96.69 37.61 97.25 57.53 109.57 87.87 112.26 43.89 65.47 64.86 118.86 50.95 179.65 92.79 25.33 83.18 52.05 62.84 60.64 45.3 129.63 25.29 95.22 32.43 93.78 77.64 88.79 124.71 26.14 34.59 53.61 113.31 12.53 108.35 66.12 89.07 45.43 78.55
AAL19195 (dnaE)
 57.81 62.11 32.06 60.31 63.37 62.26 85.16 98.81 47.36 61.86 47.31 79.43 44.9 139.5 62.41 30.46 65.84 73.61 81.17 82.6 34.18 45.19 39.03 72.32 26.44 66.7 50.14 58.21 69.81 19.29 29.2 43.61 66.06 24.09 90.86 46.02 75.85 75.02 59.77
AAL19597 (holA)
 80.42 80.85 58.08 63.95 83.15 54.51 83.23 142.58 44.14 58.24 38.27 122.21 107.85 178.13 122.0 19.03 76.95 78.88 88.73 103.78 29.4 85.24 13.82 63.96 24.87 88.14 67.43 79.11 84.37 14.0 30.88 77.2 79.98 10.6 108.06 49.75 63.95 74.72 102.29
AAL19598 (rlpB)
 189.59 193.88 232.79 201.49 281.38 156.75 147.78 304.91 223.87 175.83 159.31 267.72 315.32 383.59 206.34 108.0 147.42 161.35 132.48 162.26 91.98 173.88 135.49 141.5 79.89 294.48 225.79 187.84 289.3 65.96 155.22 222.62 290.7 119.18 141.64 160.69 138.92 409.93 254.21
AAL19599 (leuS)
 136.89 149.05 109.86 137.29 112.9 83.11 191.85 226.31 162.9 136.56 113.85 293.48 178.13 283.4 179.39 47.01 49.12 109.77 138.63 135.32 57.39 128.12 59.39 230.22 53.83 240.08 189.6 136.57 197.51 30.58 88.7 111.62 197.51 43.54 62.52 135.22 192.75 165.9 178.03
AAL19655 (ybgI)
 58.97 109.43 222.41 98.07 51.83 110.34 96.02 127.15 81.32 130.15 74.05 73.63 128.77 186.31 141.72 50.22 60.4 68.21 68.8 80.22 98.13 87.82 24.24 76.49 175.34 145.77 119.76 83.97 116.74 8.6 45.83 78.63 112.02 27.81 53.87 111.38 113.46 107.19 92.44
AAL19656 (ybgJ)
 36.84 91.58 149.45 78.53 35.54 77.7 44.42 108.66 44.13 71.89 40.5 60.28 88.06 200.7 109.04 13.47 48.62 50.97 41.7 51.73 90.44 85.32 4.99 70.03 93.65 102.63 110.04 51.17 132.57 3.93 29.48 42.94 125.03 6.78 45.74 84.59 98.29 77.6 57.09
AAL19785 (yliB)
 22.68 62.41 96.62 40.74 30.2 103.62 43.86 73.84 18.3 47.48 17.17 19.48 80.42 108.44 77.19 28.6 28.79 28.28 29.32 36.65 25.02 34.69 12.94 57.74 37.8 81.73 35.02 44.29 41.84 6.15 18.54 32.01 34.84 19.99 38.11 19.69 75.43 62.92 32.96
AAL19890 (aat)
 30.15 60.27 46.46 24.82 42.49 21.04 47.64 68.12 20.21 42.53 22.57 40.83 73.52 99.14 40.16 16.22 24.43 29.7 30.08 44.31 23.23 61.65 16.89 27.91 27.18 40.99 30.41 32.78 43.7 10.55 20.38 61.42 35.0 11.19 34.96 21.7 28.87 29.67 50.85
AAL19892 (cydD)
 30.85 61.05 30.42 31.5 22.33 11.46 53.71 68.05 30.13 49.68 33.34 54.45 45.95 96.45 60.79 14.86 38.53 71.44 64.82 82.84 12.15 50.71 21.01 51.57 13.38 56.17 37.2 40.44 43.92 16.2 30.04 35.97 41.5 14.67 43.73 25.31 57.39 25.18 56.82
AAL19896 (lolA)
 164.44 188.56 326.91 168.63 270.89 339.77 296.01 295.52 111.34 193.49 97.41 149.67 322.76 377.42 195.0 219.86 100.54 130.67 157.3 178.59 89.22 111.04 204.31 130.51 101.0 172.03 178.06 210.39 192.92 27.81 155.04 276.57 157.56 230.23 107.97 122.99 203.52 235.62 252.94
AAL19897 (ycaJ)
 72.0 99.21 107.41 70.58 98.59 104.27 92.69 137.39 33.78 63.61 33.93 81.28 130.36 208.32 89.72 37.23 48.28 72.05 81.64 97.38 57.17 77.31 27.51 67.94 42.99 78.42 75.33 81.78 107.87 18.78 68.69 97.83 85.35 28.2 70.43 61.81 80.92 57.18 103.79
AAL19998 (ymbA)
 49.77 59.8 70.15 46.97 69.41 73.49 41.91 66.02 37.33 33.89 38.14 38.5 57.04 99.7 23.92 51.21 34.28 24.13 23.97 27.69 44.42 80.29 33.64 47.29 34.43 57.41 52.08 34.86 42.5 16.67 25.09 59.52 36.45 31.57 45.53 40.42 67.3 43.37 55.28
AAL20150 (cobB)
 67.65 122.29 110.69 101.22 110.36 201.09 71.21 145.67 81.92 139.14 73.03 92.51 95.32 172.68 200.46 58.72 49.39 85.09 91.6 102.66 108.04 134.88 46.25 88.13 112.52 127.51 79.48 95.22 131.4 21.68 97.88 87.16 118.58 44.69 54.27 71.88 100.42 118.51 97.23
AAL20618 (fabI)
 339.4 402.6 165.97 657.39 363.02 543.43 492.63 339.11 401.06 484.67 365.62 572.28 238.9 463.74 314.08 133.13 287.05 242.42 229.12 262.03 173.08 589.03 206.17 478.74 291.16 651.03 528.45 380.21 809.02 238.73 197.59 315.49 892.19 138.12 139.54 591.02 338.69 311.96 445.47
AAL20722 (dsbB)
 166.39 138.11 56.2 89.77 116.15 104.62 53.24 197.44 117.69 64.83 138.74 179.55 69.5 338.39 51.52 35.94 57.75 38.23 42.02 47.61 87.09 211.86 37.6 189.96 167.43 170.85 339.31 97.68 167.91 177.31 55.43 78.43 256.22 30.03 61.92 215.41 227.26 87.15 119.55
AAL20814 (ruvC)
 92.1 119.47 65.63 110.21 97.69 107.1 38.84 132.45 112.68 122.85 83.98 250.84 52.39 238.7 31.87 41.91 8.2 24.11 20.04 28.75 60.03 164.95 26.36 135.98 37.66 200.73 115.2 79.6 155.68 37.99 40.59 44.27 221.25 19.75 7.41 123.64 95.63 81.52 46.71
AAL20915 (amn)
 47.24 88.36 248.31 102.55 95.98 88.42 76.41 100.16 58.93 108.77 54.41 30.55 128.01 135.74 85.48 67.42 47.24 64.22 67.81 74.33 47.78 73.93 35.58 63.21 46.97 103.97 31.19 86.07 140.29 5.36 59.83 102.49 127.93 39.78 64.22 41.79 100.4 122.32 108.56
AAL21266 (folC)
 57.88 95.34 54.16 65.5 61.73 63.86 72.64 126.04 94.0 89.01 111.47 117.75 59.29 171.89 146.74 15.68 128.4 85.7 154.32 91.85 32.28 92.83 14.37 67.06 34.55 109.02 90.11 52.9 49.68 13.49 32.74 66.11 49.5 8.35 119.63 77.09 77.59 67.94 87.32
AAL21267 (accD)
 192.32 276.69 117.69 216.3 159.25 225.2 155.65 194.02 206.39 236.77 251.2 428.32 167.47 310.4 173.2 57.87 127.63 120.65 151.78 164.42 117.71 339.88 54.56 218.72 115.91 435.05 419.28 170.4 307.29 82.14 91.73 124.92 349.64 44.81 167.76 402.27 184.66 144.13 185.04
AAL21282 (yfcM)
 63.61 63.98 29.3 43.47 105.42 30.89 107.26 101.39 35.61 35.74 44.08 81.11 39.43 159.73 62.01 21.48 53.88 37.46 39.47 39.26 26.02 38.1 19.28 69.9 25.06 72.0 69.32 36.47 41.39 8.31 22.96 76.01 43.97 9.62 117.77 49.05 86.21 68.13 95.84
AAL21870 (recB)
 29.08 43.07 27.8 33.4 29.56 31.35 39.29 88.57 24.31 28.85 22.32 36.15 25.94 108.8 56.02 17.01 45.81 27.16 27.67 31.77 22.74 47.37 22.86 48.83 14.79 26.32 33.33 28.21 34.06 6.09 17.15 32.46 34.0 11.6 61.38 30.75 65.14 24.76 38.87
AAL22154 (pnp)
 600.77 343.52 298.88 578.69 646.67 267.07 285.77 584.58 659.46 335.44 490.66 530.13 360.74 701.35 390.56 168.29 198.85 343.96 473.94 374.39 98.05 156.54 307.28 419.04 105.94 583.06 659.28 392.24 723.03 60.94 230.94 562.58 768.88 117.91 189.36 393.15 427.08 475.7 650.89
AAL22192 (yhbJ)
 127.52 166.57 212.02 161.94 150.59 210.41 114.0 176.75 104.36 167.73 92.05 146.67 247.26 245.76 239.6 99.12 54.03 73.19 68.16 94.92 77.03 177.2 81.95 104.21 75.34 199.68 101.68 140.08 198.64 21.5 71.53 189.44 171.24 64.51 81.85 92.4 117.92 155.68 190.81
AAL22772 (rffH)
 300.13 316.95 462.76 219.56 589.62 445.06 172.74 330.27 179.61 213.6 145.26 379.65 432.28 586.36 123.3 141.92 90.18 46.67 59.89 59.01 614.8 250.46 68.53 212.84 277.13 309.59 271.56 298.95 178.6 38.85 200.04 571.98 153.96 48.46 135.41 209.77 190.43 414.12 442.67
AAL22773 (wecD)
 75.49 75.32 55.92 78.58 90.39 115.78 62.37 84.67 26.22 53.41 28.09 124.86 76.58 131.44 73.76 17.28 47.69 40.3 48.82 52.21 79.37 40.44 8.67 82.81 53.38 88.3 85.16 63.48 82.17 12.48 18.24 101.7 74.7 5.73 64.46 60.58 116.24 57.94 86.66
AAL22774 (wecE)
 57.58 77.23 53.91 65.24 95.74 89.43 68.25 104.13 33.48 58.51 34.37 104.85 70.23 165.46 75.96 43.1 60.05 28.66 35.06 37.93 69.34 42.34 37.93 64.51 44.72 104.99 63.7 51.89 70.12 18.67 33.99 97.92 61.4 28.68 112.35 44.75 72.74 54.8 92.34
AAL22794 (yigB)
 58.0 67.36 38.96 53.06 40.7 56.77 25.38 76.95 27.44 40.54 35.61 66.26 40.65 128.85 54.52 16.57 22.55 25.11 31.95 29.11 28.6 35.27 11.33 55.53 34.81 71.33 55.4 59.44 83.86 9.37 37.36 55.42 76.57 8.41 33.35 49.73 69.8 33.77 72.23
AAL22959 (argE)
 101.25 93.28 157.88 106.11 48.49 217.54 28.58 174.32 53.68 84.25 67.95 30.08 105.42 228.16 79.45 60.53 24.04 23.29 24.78 31.85 81.5 41.88 23.78 86.57 68.86 95.4 68.46 117.95 247.64 7.87 43.69 78.93 230.11 20.7 22.45 52.17 127.56 54.1 112.58
AAL22981 (rpoB)
 663.35 460.91 338.31 745.04 654.96 753.71 517.11 531.3 584.88 489.34 305.86 859.16 349.35 689.28 329.09 221.12 147.52 477.72 661.9 556.54 93.06 332.71 286.94 400.12 121.83 766.44 780.69 369.93 732.37 74.36 165.97 521.11 766.12 140.91 157.05 336.85 421.45 779.42 624.26
AAL22982 (rpoC)
 622.82 548.04 490.27 1021.5 922.12 1709.48 610.87 659.92 748.52 599.01 364.72 735.17 539.06 902.04 381.95 337.28 209.54 439.21 523.79 523.93 126.42 350.99 345.12 532.37 117.79 915.84 821.78 385.22 813.09 101.79 224.27 818.27 860.2 201.5 188.09 521.78 497.78 1017.71 824.04

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)