Heatmap: Cluster_21 (HCCA)

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(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL23444 (PSLT002)
0.06 2.23 0.93 -0.79 -0.2 -0.81 -0.14 0.23 -1.8 0.55 -1.26 -1.59 1.21 0.11 -0.34 -1.34 -0.97 0.39 0.48 0.77 -0.28 1.57 -2.27 -3.1 0.35 -0.66 - 0.46 -0.38 -3.58 -0.68 0.15 -0.65 -1.04 -0.56 - -2.69 0.38 1.02
AAL23450 (PSLT020)
-0.15 3.48 -0.3 -1.38 -0.65 -1.93 0.36 0.17 -1.21 -1.0 0.21 -1.43 0.75 -0.11 -0.18 -0.98 -0.96 -0.15 -0.65 0.17 -1.5 1.57 -1.28 -5.91 0.38 -0.73 - 0.18 -2.52 -2.02 -0.2 0.21 -2.17 -1.92 0.16 - -5.26 -0.18 0.09
AAL23460 (PSLT036)
0.66 1.56 1.26 -0.76 -0.78 -1.97 0.66 0.37 -1.76 -0.13 -1.0 -0.36 1.42 0.36 -1.34 -1.07 -0.56 -0.64 -0.43 -0.01 0.11 0.8 -2.24 -1.54 1.2 -0.39 - 1.06 0.37 -1.53 -0.77 0.37 0.42 -0.92 -1.46 - -1.27 0.07 0.73
AAL23461 (PSLT042)
-0.05 1.69 -0.33 -0.66 -0.83 -0.8 0.2 0.04 -0.8 -0.01 0.23 -1.47 0.86 0.24 -0.93 0.93 -1.85 0.41 0.1 0.65 0.14 1.74 -0.43 -2.35 0.15 -0.86 - 0.88 0.15 -2.36 0.29 -0.26 0.09 0.79 -1.36 - -2.22 -1.66 0.39
AAL23466 (PSLT056)
0.12 3.99 -0.48 0.18 -1.5 -1.95 -0.58 0.59 -0.87 -1.26 -0.74 -2.29 0.35 -0.01 -2.78 - -2.04 -0.26 -0.71 -0.54 0.4 1.45 - - 0.9 -1.4 - -0.96 -0.96 -2.83 -2.62 -1.24 -0.23 - 0.23 - - -1.1 -1.78
AAL23467 (PSLT057)
0.15 4.35 0.22 0.33 -1.19 -1.49 -2.12 0.06 -2.05 -2.03 -1.97 -4.23 0.44 -0.07 -1.44 - -2.71 -1.97 -0.89 -0.91 0.01 -0.96 - - 0.87 -2.31 - -0.57 -0.89 -3.65 -1.72 -1.72 -0.08 - -1.38 - - -0.57 -0.77
AAL23468 (PSLT059)
-0.09 3.92 -0.03 -0.09 -1.31 -2.05 -1.9 0.52 -0.41 -0.32 0.2 -1.09 0.05 0.75 -1.05 - -1.9 -1.16 -1.32 -1.12 -0.29 0.24 - - 0.75 -0.59 - -0.76 -0.06 -4.62 -0.08 -0.79 0.09 - -0.9 - - -0.97 0.13
AAL23469 (PSLT060)
-0.78 4.17 0.27 -1.0 -3.68 -3.09 -4.7 0.92 -0.9 -0.56 -0.55 -1.61 -0.32 1.45 - - -2.53 -3.07 - -3.08 - 0.82 - - -0.82 0.22 - -1.08 -0.54 -2.6 0.71 -1.93 -0.41 - -0.54 - - -0.29 0.5
AAL23470 (PSLT061)
-0.81 2.72 1.6 -0.07 -0.85 1.47 -1.0 0.59 -1.78 0.27 -1.8 -1.75 0.75 1.08 -0.89 - -0.63 -0.31 -0.35 -0.14 1.2 0.29 - - 0.24 -0.26 - -1.54 -0.18 -3.79 -1.18 0.06 -0.36 - 0.85 - - 0.38 -0.43
AAL23471 (PSLT062)
-0.23 2.88 1.15 -0.34 0.01 -0.56 -0.78 0.46 -0.86 -0.06 -0.48 -0.69 1.32 0.87 -2.77 - -2.12 -1.05 -1.44 -1.01 0.28 1.04 - - 1.0 0.47 - 0.49 -0.43 -1.06 -0.2 0.27 -0.58 - -0.31 - - 0.16 0.37
AAL23472 (PSLT063)
0.19 2.46 1.22 0.13 0.13 0.48 0.06 0.42 -1.85 -0.25 -1.57 -1.28 1.09 0.07 -0.44 - 0.16 -0.36 -0.38 -0.23 0.32 0.35 - - 0.46 0.33 - -0.2 -0.62 -3.26 -0.54 0.44 -0.68 - 1.26 - - 0.9 0.06
AAL23473 (PSLT064)
0.31 2.49 -0.62 -0.66 -1.57 -1.68 1.58 0.39 -2.32 -0.2 -1.45 0.15 0.26 1.04 -0.0 - -0.46 -0.35 -0.07 0.13 0.67 2.29 - - 0.86 -0.2 - -0.26 -1.33 -1.46 0.16 -0.91 -1.22 - 0.18 - - -0.67 -0.08
AAL23474 (ssbB)
-0.21 3.63 -0.14 0.25 -1.01 -1.72 -1.26 -0.21 -1.69 0.24 -0.55 -1.88 -0.35 -1.77 -0.72 - -1.57 -0.54 -0.25 -0.15 -1.0 0.43 - - 0.41 -1.18 - 0.03 0.49 -3.77 -2.39 -0.93 1.39 - 1.92 - - -0.45 -0.39
AAL23475 (PSLT067)
0.97 2.17 0.33 -0.51 -0.62 -1.77 0.08 0.17 0.48 1.5 1.19 -0.57 0.7 -0.54 -2.19 - -0.97 -2.35 -1.14 -0.95 -0.2 2.04 - - 0.72 -1.14 - 0.22 0.73 -3.23 -1.64 -0.44 0.94 - 0.43 - - -0.23 -0.18
AAL23476 (PSLT068)
-0.29 3.75 -0.35 0.35 -1.86 -1.82 -1.36 0.05 -1.92 0.1 -1.14 -1.94 -0.71 -0.04 -0.47 -4.44 -1.29 -0.12 -0.07 0.12 -0.31 1.5 -5.25 -2.97 0.36 -0.68 - -0.43 0.3 -3.06 -1.55 -1.77 0.97 -5.85 -0.08 - -1.59 -0.69 -0.75
AAL23477 (psiB)
-0.51 2.7 0.26 -0.23 -0.43 -2.33 -0.92 0.62 -0.89 0.93 -0.28 0.08 0.83 0.93 -0.66 -6.03 -0.96 -0.51 -0.44 -0.03 -0.54 0.83 -6.74 -5.69 -0.27 -0.07 - 0.35 0.46 -2.52 0.3 0.05 0.52 -7.95 -0.28 - -5.35 0.63 0.97
AAL23478 (psiA)
-0.67 2.05 0.43 -0.12 -0.18 -1.26 -0.99 0.62 -0.86 0.48 -0.32 -0.58 1.0 1.3 -0.87 -2.27 -0.51 -0.11 -0.33 0.16 0.4 0.1 -3.58 -0.47 0.08 0.32 -8.33 0.21 0.57 -3.07 -0.22 -0.27 0.74 -2.94 0.12 - -0.91 0.45 0.77
AAL23480 (traJ)
0.37 2.89 -2.59 -0.76 -2.07 -2.76 -1.15 1.28 -1.81 -1.84 0.15 -6.23 -0.48 1.06 -0.98 1.02 1.16 -0.55 -0.34 -0.05 -0.52 0.42 1.75 -1.6 0.77 -1.65 - -1.08 0.28 -1.26 -3.19 -2.25 0.51 0.05 -1.23 - -0.71 -1.58 -0.85
AAL23482 (traA)
0.02 2.23 0.65 0.69 -1.19 1.14 -2.16 1.36 -2.95 0.09 -2.55 -1.47 -0.75 1.23 -2.12 -0.26 -1.97 -0.57 0.06 0.08 -0.57 -1.84 -1.79 -2.06 -0.09 -0.44 - -0.59 2.28 -1.69 -2.03 -0.36 2.17 -2.26 -3.7 - -1.77 -0.82 -1.91
AAL23483 (traL)
-0.31 3.13 -0.7 0.35 -1.84 -1.0 -0.8 0.35 -0.01 -0.58 1.44 -1.18 -1.03 0.47 -1.71 -1.34 -1.64 -0.13 0.36 0.69 -1.73 0.97 -3.84 -2.57 0.58 -0.7 - -0.27 1.51 -3.62 -1.94 -0.99 1.56 -2.17 -5.43 - -1.87 -1.75 -1.01
AAL23484 (traE)
-0.59 3.11 -0.36 -0.11 -1.38 -2.15 -0.92 1.06 -0.74 0.23 -0.22 -1.62 -0.15 1.55 -0.59 -1.32 -1.29 -0.01 -0.06 0.19 -0.97 0.35 -3.13 -2.46 0.38 0.47 - 0.13 0.95 -1.19 -0.48 -1.05 1.16 -2.46 -2.74 - -1.74 -0.46 -1.25
AAL23485 (traK)
-0.73 2.52 0.44 0.28 -0.78 -2.24 -1.23 0.76 -1.29 0.42 -0.98 -1.3 0.08 1.5 -0.07 -3.34 -0.39 1.09 0.53 0.9 -0.48 0.38 -7.79 -2.51 0.3 0.18 - -0.38 1.04 -2.89 -0.22 -0.25 0.89 -3.94 -1.51 - -1.87 -0.08 -0.51
AAL23486 (traB)
-0.43 3.39 0.55 0.14 -0.72 -2.24 -1.61 0.86 -0.97 -0.54 -0.53 -1.1 0.32 1.37 -1.0 -2.29 -1.08 -0.14 0.06 0.14 -0.92 -0.64 -3.66 -2.36 0.05 -0.34 - -0.54 0.86 -4.28 -0.97 -0.46 0.85 -3.45 -0.48 - -1.7 0.07 -0.4
AAL23487 (traP)
-0.13 2.98 0.97 -0.08 -1.16 -1.84 -0.78 0.57 -1.11 -0.12 -0.55 -0.94 -0.67 0.98 -0.6 0.02 0.28 0.61 0.1 0.47 -3.05 0.73 -1.7 -0.94 -0.01 -0.3 - -0.83 0.23 -2.43 -1.18 -0.57 0.45 -0.13 -1.45 - 0.06 0.08 -2.06
AAL23489 (traV)
-0.88 1.91 1.76 0.2 -0.3 0.45 -1.22 0.57 -1.25 0.51 -0.88 -1.3 0.2 1.14 -1.5 -0.92 -0.43 -0.05 0.08 0.03 -1.32 0.79 -3.79 -0.98 0.49 0.95 - -0.14 0.84 -2.18 -0.6 -0.21 0.89 -2.32 -1.02 - -0.61 0.22 -1.23
AAL23490 (traR)
0.26 3.54 0.56 0.22 -0.51 0.62 -2.79 0.25 -0.34 -0.08 0.57 -1.5 -0.22 1.06 -1.63 - -2.98 -1.29 -1.8 -2.48 -2.48 0.71 - - 0.81 0.79 - -0.44 0.42 -1.83 -1.87 -0.35 0.71 - - - - 0.21 -0.67
AAL23491 (PSLT087)
-0.79 2.93 0.81 0.31 -0.8 0.76 -0.4 0.6 -0.82 -0.1 -0.29 -2.82 -0.39 1.45 -1.47 - -1.0 0.81 0.82 0.92 -1.1 -0.57 - - 0.6 0.9 - -0.67 0.51 -3.78 -1.15 -0.72 0.6 - -1.63 - - 0.4 -2.26
AAL23492 (traC)
-0.52 2.81 0.81 0.08 -0.46 0.07 -0.13 0.81 -0.75 -0.3 -0.6 -1.46 0.53 1.09 0.45 - -1.03 0.69 0.46 0.8 -0.78 0.21 - - 0.21 0.22 - -0.45 -0.01 -3.74 -0.56 -0.09 0.2 - -0.29 - - 0.08 -0.05
AAL23493 (trbI)
-0.78 3.17 0.61 0.25 -0.42 0.46 -1.17 0.71 -2.01 -0.48 -1.69 -1.23 -0.02 1.25 -1.91 - 0.06 0.64 0.65 0.53 -0.46 -0.58 - - 0.65 0.11 - -1.09 0.07 -2.1 -1.86 -0.81 0.45 - 0.79 - - 0.3 -0.75
AAL23494 (traW)
-0.84 2.79 0.61 0.38 -0.26 0.68 -0.87 0.67 -1.23 -0.43 -1.24 -1.03 -0.04 1.31 0.31 - -0.73 0.15 0.47 0.68 -0.29 0.98 - - 0.25 0.63 - -0.91 0.08 -3.78 -1.65 -0.61 0.57 - 0.07 - - 0.28 -0.41
AAL23495 (traU)
-0.62 2.83 0.97 0.0 0.07 0.62 -0.96 0.74 -0.84 -0.11 -1.07 -0.59 0.24 1.51 -0.4 - -1.11 -0.27 -0.21 -0.11 -0.1 0.89 - - 0.44 0.35 - -0.38 0.18 -2.89 -1.34 0.21 0.33 - -0.47 - - 0.14 -0.1
AAL23496 (PSLT093)
-0.44 3.11 0.49 0.03 -0.61 0.1 0.67 0.67 -2.1 -0.34 -2.49 -1.24 0.02 1.21 0.13 - -0.41 0.76 0.33 0.62 -2.23 1.05 - - 0.33 -0.17 - -0.47 -0.18 -1.79 -0.45 -0.48 -0.46 - -0.23 - - -0.35 -0.2
AAL23497 (trbC)
-0.83 2.33 1.24 -0.02 0.04 0.05 -0.38 0.77 -1.31 0.28 -1.59 -0.53 0.76 1.48 -0.43 - -0.83 0.14 -0.28 0.15 0.21 0.52 - - 0.33 0.29 - 0.1 0.43 -3.81 0.26 0.19 0.21 - -0.97 - - 0.39 0.26
AAL23498 (traN)
-0.58 2.65 0.87 -0.2 -0.66 -0.49 0.29 0.74 -1.56 0.1 -2.08 -1.29 0.52 1.23 0.5 -8.41 -0.35 0.79 0.73 0.97 -0.04 0.53 - - 0.52 -0.33 - -0.31 -0.36 -4.04 -0.69 -0.41 -0.27 - 0.08 - - 0.16 0.08
AAL23499 (trbE)
-0.59 2.41 1.69 -0.99 0.28 -0.75 1.29 0.85 -1.73 -0.32 -1.7 -2.81 1.64 0.98 -2.09 - -0.09 0.16 -1.28 -0.62 0.43 -0.45 - - 0.65 -0.76 - -1.04 -1.61 -4.62 0.02 0.43 -1.19 - 0.25 - - 1.64 0.08
AAL23500 (traF)
-0.55 2.06 1.54 -0.47 -0.31 0.16 -0.68 0.97 -0.7 0.17 -0.18 -1.36 1.32 1.64 -1.64 -8.39 -1.8 -0.82 -0.71 -0.35 0.58 0.77 - - 0.63 0.49 - 0.02 0.3 -2.68 0.03 0.09 0.39 - -2.52 - - 0.53 0.32
AAL23501 (traQ)
-0.76 2.66 0.95 -0.45 -1.04 -1.16 -0.63 0.45 -1.46 -0.03 -0.61 -2.33 0.34 1.02 -0.55 -7.23 -0.79 0.47 0.54 1.01 0.71 0.53 - - 1.92 0.77 - -0.23 0.07 -3.99 0.18 -0.9 -0.14 - -2.41 - - 0.22 -1.27
AAL23502 (trbB)
-1.1 2.58 1.48 -0.4 -0.59 0.88 -0.62 0.38 -1.27 -0.1 -0.79 -2.47 0.88 0.99 -0.12 -9.42 -1.24 0.56 0.57 0.76 0.19 0.44 - - 1.09 0.89 - -0.36 -0.17 -4.62 -0.83 -0.71 -0.49 - -1.35 - - 0.51 -0.52
AAL23503 (traH)
-0.56 1.91 1.58 -0.2 -0.44 0.8 -0.34 0.41 -1.2 0.26 -1.04 -1.03 0.87 1.13 0.47 - -1.15 0.73 0.71 0.88 0.0 0.64 - - 0.3 0.69 - -0.45 -0.21 -2.68 -0.35 -0.37 -0.37 - -1.08 - - 0.77 -0.23
AAL23504 (traG)
-0.49 1.34 1.25 -0.34 0.21 -0.05 0.23 0.59 -1.34 0.19 -1.4 -1.22 1.16 1.01 0.89 -13.12 -0.48 0.68 0.52 0.86 -0.26 0.27 - - -0.31 -0.13 - -0.13 -0.13 -2.83 -0.2 0.41 -0.37 - -0.28 - - 0.82 1.3
AAL23507 (traD)
-0.78 1.76 -0.1 -0.4 -1.01 -0.44 -0.09 0.33 -0.44 -0.26 0.71 -2.51 0.05 1.09 -0.01 -6.18 -0.27 1.75 1.64 1.71 -0.78 0.76 - - -0.09 -0.8 - -0.48 0.12 -3.64 -0.56 -0.49 -0.04 - 0.39 - - -0.1 0.6
AAL23509 (traI)
-0.7 1.74 0.38 -0.16 -0.09 -0.21 -0.5 0.87 -0.61 0.16 -0.62 -0.16 0.77 1.62 0.11 -10.56 0.01 0.51 0.63 0.68 0.09 0.78 - - -0.05 0.31 - -0.18 0.21 -3.18 -0.18 -0.05 0.17 - 0.19 - - -0.02 0.58
AAL23510 (traX)
-0.44 1.94 0.09 -0.19 0.08 -0.35 -1.28 1.03 -0.3 0.21 -0.13 0.44 0.74 1.87 -0.48 - -1.4 -0.53 -0.85 -0.59 -0.78 1.08 - - 1.17 0.37 - -0.08 0.36 -3.2 -0.03 0.31 0.45 - -1.36 - - 0.1 1.0
AAL23511 (finO)
-0.53 1.41 0.94 0.15 -0.36 -0.89 0.08 0.8 -1.5 0.55 -1.63 0.01 0.8 1.31 0.63 -4.7 -0.53 0.56 0.52 0.67 0.09 0.63 -7.47 -4.55 0.57 -0.09 - -0.11 0.47 -3.74 -0.1 0.12 0.19 -5.22 -0.1 - -4.02 0.47 0.4
AAL23512 (srgC)
-0.59 1.78 0.36 -0.63 0.48 -2.0 0.65 0.76 -1.28 -0.1 -0.91 -1.87 0.85 0.63 0.01 -0.15 0.29 0.23 0.42 0.62 -0.87 1.62 -1.85 -2.93 -0.21 -0.19 - -0.13 -0.25 -1.67 -0.5 -0.04 -0.53 -0.4 0.2 - -2.51 0.63 0.63
AAL23515 (srgA)
-0.61 2.0 -0.57 -0.76 -0.32 -2.16 0.34 0.51 -0.26 -1.08 0.25 -0.97 0.14 1.28 -1.79 -1.39 0.73 0.56 0.77 0.7 -0.95 -0.05 -1.86 0.46 0.48 0.67 - -0.41 -0.14 -3.34 -1.64 -1.05 0.05 -1.76 -0.62 - 1.63 -0.14 0.05
AAL23519 (orf5)
-0.4 1.82 0.59 -0.62 -0.38 -2.06 0.77 0.35 -1.62 -0.43 -1.06 -1.65 0.44 0.12 1.0 - 0.23 1.36 1.28 1.49 0.16 1.21 - - 0.18 -0.53 - -0.59 -0.72 -3.13 -0.6 -0.26 -0.91 - 1.29 - - 0.19 0.03
AAL23520 (pefD)
-0.47 2.01 0.56 -0.11 -0.3 -1.65 -0.46 0.51 -1.6 0.01 -1.4 -1.57 0.52 0.82 0.64 -2.02 0.51 1.17 0.95 1.21 -0.47 -0.14 -3.95 -2.88 0.05 -0.27 - -0.27 0.13 -2.78 -0.11 -0.32 -0.1 -2.86 1.16 - -2.06 0.4 0.31
AAL23521 (pefC)
-0.76 2.85 0.33 -0.31 -0.45 -1.46 -0.54 0.45 -0.96 -0.04 -0.79 -0.71 0.63 0.93 0.25 -3.58 -0.74 1.21 0.84 1.17 -0.71 0.47 -3.65 -2.27 0.05 -0.13 - -0.3 -0.58 -2.38 -0.9 -0.46 -0.3 -3.64 -0.26 - -1.7 0.17 0.36
AAL23523 (pefB)
-0.14 2.95 -1.71 -0.63 -2.16 -4.84 0.13 0.12 0.65 0.22 1.84 -0.38 -0.67 -1.77 0.27 -3.71 0.01 1.68 1.1 1.95 -2.25 -0.82 -7.17 -4.05 0.37 -2.04 - -0.46 -0.9 -0.53 -1.66 -1.53 -0.45 -5.17 -0.22 - -2.67 -1.66 -1.32
AAL23532 (spvR)
-0.8 2.2 -0.31 -1.32 -2.19 0.35 0.44 0.14 -0.18 -2.11 0.84 -4.51 1.66 -0.7 -0.85 -0.57 0.58 0.4 0.72 0.92 0.57 2.11 -2.76 -3.79 1.86 -0.91 - -0.85 -1.72 -2.93 -1.48 -2.39 -1.51 -0.96 -0.13 - -2.5 -1.85 -1.3
AAL23540 (samB)
-0.62 1.93 -0.02 -0.02 -0.31 -2.55 0.32 0.45 -1.09 -0.59 -1.14 -0.28 0.07 1.15 0.4 -1.91 -0.87 0.37 0.23 0.53 -0.24 0.83 -3.2 -2.78 0.03 -0.58 - 0.5 1.54 -4.37 -1.1 -0.42 1.21 -2.95 1.21 - -2.33 0.44 -0.34
AAL23542 (finP)
-1.16 1.99 -0.2 -0.72 -1.62 -3.82 0.04 -0.21 -1.32 0.18 -0.55 -3.65 0.24 -0.63 1.08 0.2 -0.63 2.11 1.6 2.43 -2.68 0.41 -0.57 -3.67 -0.75 -1.98 - -0.53 -1.71 -2.74 -0.23 -0.22 -1.17 0.05 -0.4 - -3.63 -1.1 0.43

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.