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Heatmap: Cluster_17 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL19343 (yaiA)
 0.15 0.98 0.62 -1.34 -0.56 -2.05 1.02 2.61 -2.19 -2.26 -1.79 -2.13 0.98 -0.74 -1.46 -0.23 -1.21 -1.3 -1.13 -1.02 -0.56 0.91 -1.68 2.64 -0.28 -2.11 -3.2 0.13 -1.12 -2.81 -1.18 -0.17 -0.82 0.16 -0.81 -3.43 0.03 -0.45 0.06
AAL19828 (STM0893)
 -1.24 - - -12.56 - - - 3.43 - - - - - 3.77 - - 2.61 - - - -8.96 - - - 0.88 - - - -10.61 - - - - - 2.64 - - - -
AAL19829 (STM0894)
 -1.57 - - - - - - 4.35 - - - - - 1.82 - - 1.94 - - - - - - - 2.94 - - - - - - - - - 1.71 - - - -
AAL19830 (STM0895)
 0.07 - - - - - - 3.83 - - - - - 2.98 - - 1.46 - - - - - - - 3.53 - - - - - - - - - 0.62 - - - -
AAL19831 (STM0896)
 -0.83 - - -7.27 - - - 3.56 - - - - - 2.84 - - 2.9 - - - - - - - 3.34 - - - - - - - - - 0.88 - - - -
AAL19832 (STM0897)
 -1.21 - - -5.82 - - - 3.88 - - - - - 2.5 - - 2.42 - - - - - - - 3.5 - - - - - - - - - 0.65 - - - -
AAL19833 (STM0898)
 -1.44 - - - - - - 2.87 - - - - - 1.48 - - 3.54 - - - - - - - 1.49 - - - -7.33 - - - - - 3.81 - - - -
AAL19834 (STM0898A)
 0.25 - - - - - - 4.1 - - - - - 2.81 - - 2.18 - - - - - - - 0.29 - - - - - - - - - 2.98 - - - -
AAL19835 (STM0899)
 0.01 - - - - - - 3.49 - - - - - 2.4 - - 2.27 - - - - - - - 1.19 - - - - - - - - - 3.85 - - - -
AAL19836 (STM0900)
 -1.26 - - - - - - 3.84 - - - - - 3.33 - - 2.27 - - - - - - - 0.97 - - - - - - - - - 2.89 - - - -
AAL19837 (STM0901)
 -1.39 - - - - - - 4.0 - - - - - 3.02 - - 2.56 - - - - - - - -1.29 - - - - - - - - - 3.04 - - - -
AAL19838 (STM0902)
 -1.07 - - - - - - 3.39 - - - - - 3.28 - - 2.47 - - - - - - - 0.2 - - - - - - - - - 3.54 - - - -
AAL19841 (STM0905)
 -0.95 - - -10.01 - - - 3.62 - - - - - 2.42 - - 3.73 - - - -6.18 - - - -0.31 - - - - - - - - - 2.75 - - - -
AAL19845 (STM0909)
 -1.2 0.63 -1.23 -1.68 -0.16 -3.24 -1.82 2.58 -0.78 -2.51 0.76 -3.16 0.82 1.28 -2.91 1.43 0.56 -1.11 -1.02 -0.97 -0.38 -0.73 -0.02 -2.43 -0.2 -2.07 -0.58 -0.53 -1.57 -2.36 -2.01 -0.45 -0.41 2.19 0.54 -1.53 -1.17 -0.32 0.7
AAL19846 (STM0910)
 -0.78 - - -10.49 - - - 3.92 - - - - - 3.42 - -0.02 2.24 - - - - - -1.09 -2.07 -0.91 - - - - - - - - 0.28 2.05 - -1.77 - -
AAL19847 (STM0911)
 -0.97 - - -10.18 - - - 3.94 - - - - - 3.88 - - 2.08 - - - - - - - -0.92 - - - - - - - - - 1.87 - - - -
AAL19848 (STM0912)
 -0.26 - - -10.66 - - - 4.02 - - - - - 3.85 - - 1.95 - - - - - - - -1.08 - - - - - - - - - 1.67 - - - -
AAL19849 (STM0913)
 -0.53 - - - - - - 4.16 - - - - - 3.41 - - 2.55 - - - - - - - -1.78 - - - - - - - - - 1.87 - - - -
AAL19850 (STM0914)
 -0.08 - - - - - - 4.42 - - - - - 3.41 -3.5 - 1.51 -3.92 - -3.74 - - - - -1.48 - - - - - - - - - 1.33 - - - -
AAL19851 (STM0915)
 -1.06 - - - - - - 4.32 - - - - - 3.07 - - 2.02 - - - - - - - 0.7 - - - - - - - - - 2.18 - - - -
AAL19852 (STM0916)
 -0.66 - - - - - - 4.06 - - - - - 3.77 - - 1.86 - - - - - - - 0.23 - - - - - - - - - 1.71 - - - -
AAL19853 (STM0917)
 -0.7 - - - - - - 4.26 - - - - - 3.32 - - 2.35 - - - - - - - -0.24 -3.72 - - - - - - - - 1.67 - - - -
AAL19854 (STM0918)
 -1.31 - - -10.08 - - - 3.63 - - - - - 3.26 - - 3.11 - - - - - - - -0.58 - - - - - - - - - 2.86 - - - -
AAL19855 (STM0919)
 -1.47 - - - - - - 2.74 - - - - - 1.19 - - 3.19 - - - - - - - -0.62 - - - - - - - -6.24 - 4.31 - - - -
AAL19856 (STM0920)
 -1.17 - - - - - - 3.65 - - - - - 2.48 - - 3.25 - - - - - - - 1.29 - - - - - - - - - 3.08 - - - -
AAL19857 (STM0921)
 -1.41 - - - - - - 3.35 - - - - - 3.38 - - 2.96 - - - - - - - 1.18 - - - - - - - - - 2.98 - - - -
AAL19858 (STM0922)
 -1.81 - - - - - - 3.38 - - - - - 3.49 - - 2.65 - - - - - - - 1.47 -7.54 - - - - - - - - 3.01 - - - -
AAL19860 (STM0924)
 -2.58 - - - - - - 3.82 - - - - - 4.02 - - 1.54 - - - - - - - 1.43 - - - - - - - - - 1.52 - - - -
AAL19861 (STM0925)
 -0.6 -9.85 - -11.88 - - - 4.01 - - - - -5.9 3.61 - - 2.23 - - -8.39 - - - - -0.32 - - - -7.05 - - - - - 2.18 - - - -
AAL19862 (STM0926)
 -0.71 0.3 -1.1 -2.41 -2.64 -1.68 -1.93 2.72 -1.0 -1.5 0.01 -3.04 -0.64 1.78 -2.97 0.36 0.87 -1.5 -2.17 -1.42 2.12 0.79 -0.19 0.36 1.23 -1.67 -1.26 -1.29 -1.97 -4.46 -3.4 -2.71 -1.38 0.4 1.03 -1.96 1.16 -2.22 -2.14
AAL19863 (STM0927)
 -0.88 -7.52 - -7.36 - - -5.2 3.87 -2.24 -7.39 -2.1 - - 1.3 - -0.31 2.09 - - -7.23 - -4.73 0.58 -0.91 -1.22 - 0.15 -4.22 -3.44 - - - -3.32 -0.06 3.16 -0.19 0.22 - -
AAL19865 (STM0929)
 -0.0 - - - - - - 4.62 - - - - - -1.17 - - 2.96 - - - - - - - -1.41 - - - - - - - - - 2.29 - - - -
AAL19882 (tnpA_1)
 -0.54 -1.11 -1.46 -1.09 -1.02 -2.8 -0.86 -1.85 -1.8 -1.85 -0.64 -2.31 -1.02 -2.62 0.97 -5.35 -1.24 -0.65 -0.27 -0.18 -1.72 -3.99 -6.26 3.04 -2.67 -1.94 -2.24 -0.67 -1.68 -1.88 -2.25 -0.79 -1.47 -5.36 -0.41 -2.84 3.92 -1.27 -0.46
AAL20073 (csgB)
 -2.53 0.53 -0.13 -3.11 -3.17 -3.28 -3.78 2.71 -1.15 -3.43 1.23 -4.66 -1.47 -2.91 -6.15 -3.51 -2.71 -4.2 -3.49 -3.4 -2.3 -2.38 -4.94 1.99 -1.67 -3.63 -3.1 -2.23 -3.94 -4.67 -3.83 -2.81 -2.99 -2.39 -5.78 -3.23 4.28 -2.11 -3.45
AAL20074 (csgA)
 -0.65 0.39 2.05 -1.35 -1.41 -1.26 -0.73 1.78 0.82 -0.96 1.64 -3.5 0.89 -0.53 -2.83 -0.56 -0.73 -0.36 -0.31 0.23 -0.78 -1.33 -2.48 0.78 -0.09 -0.3 -1.85 -0.27 -0.48 -2.79 -0.49 0.11 -0.51 -0.9 -2.92 -2.98 2.11 -0.32 -1.07
AAL20869 (tnpA_2)
 -0.54 -1.11 -1.46 -1.09 -1.02 -2.8 -0.86 -1.85 -1.8 -1.85 -0.64 -2.31 -1.02 -2.62 0.97 -5.35 -1.24 -0.65 -0.27 -0.18 -1.72 -3.99 -6.26 3.04 -2.67 -1.94 -2.24 -0.67 -1.68 -1.88 -2.25 -0.79 -1.47 -5.36 -0.41 -2.84 3.92 -1.27 -0.46
AAL21365 (tnpA_3)
 -0.54 -1.11 -1.46 -1.09 -1.02 -2.8 -0.86 -1.85 -1.8 -1.85 -0.64 -2.31 -1.02 -2.62 0.97 -5.35 -1.24 -0.65 -0.27 -0.18 -1.72 -3.99 -6.26 3.04 -2.67 -1.94 -2.24 -0.67 -1.68 -1.88 -2.25 -0.79 -1.47 -5.36 -0.41 -2.84 3.92 -1.27 -0.46
AAL21589 (STM2702)
 - 0.27 - - - - -2.07 2.67 - - - - - 2.89 - -6.13 2.17 - - - - -1.68 -3.94 2.4 - - - - - - -3.86 - - -5.53 2.73 - 2.79 - -
AAL21590 (STM2703)
 - - - - - - - 4.11 - - - - - 3.23 - - 2.48 - - - - - - - - - - - - - - - - - 2.76 - - - -
AAL21603 (STM2716)
 - 0.17 - - - - -4.96 -1.41 - - - -3.93 - - -3.71 - -1.7 - - - - - - 3.77 - - - - - - - - - - -1.01 - 4.52 - -
AAL21611 (STM2724)
 - - - - - - - 2.86 - - - - - 1.69 - - 4.06 - - - - - - - - - - - - - - - - - 3.57 - - - -
AAL21614 (STM2728)
 - - - - - - - -0.67 - - - - - -6.11 - -2.42 2.51 - - - - - -1.78 2.91 - - - - - - - - - -2.14 3.46 - 3.74 - -
AAL21616 (STM2730)
 - -1.1 - - - - -5.51 0.83 - - - -5.06 - -0.13 - -6.06 1.93 - - - - -6.46 -8.0 3.13 - - - - - - -4.14 - - -6.84 -0.4 - 4.48 - -
AAL21617 (STM2731)
 - - - - - - - -0.01 - - - - - -0.35 - - 0.89 - - - - - - 2.85 - - - - - - - - - - -1.24 - 4.79 - -
AAL21619 (STM2733)
 - 2.0 - - - - - 2.89 - - - -3.12 - 0.29 - -3.13 3.43 - - - - -3.4 -5.0 1.62 - - - - - - 0.47 - - - 1.4 - 3.02 - -
AAL21620 (STM2734)
 - - - - - - - 3.75 - - - - - 3.2 - - 3.11 - - - - - - - - - - - - - - - - - 2.95 - - - -
AAL21621 (STM2735)
 - - - - - - - 2.55 - - - - - 2.16 - - 1.61 - - - - - - 2.33 - - - - - - - - - - 2.07 - 4.03 - -
AAL21622 (STM2736)
 - -1.26 - -10.87 - - -5.33 0.98 - - - - - -0.0 - - -0.52 - - - - -4.22 - 3.05 - - - - -6.68 - -7.08 - - - 0.95 - 4.62 - -
AAL21623 (STM2737)
 - - - - - - - 0.32 - - - - - -2.1 - -5.92 -0.64 - - - - - -5.11 3.28 - - - - - - - - - -7.14 -0.41 - 4.72 - -
AAL21624 (STM2738)
 - -11.88 - - - - - 1.37 - - - - - 1.26 - - 2.79 - - - - - - 2.37 - - - - - - - - - - 3.07 - 3.76 - -
AAL21625 (STM2739)
 - -0.87 - - - - -0.26 1.59 - - - -0.38 - 1.6 -3.6 -10.29 2.51 - - - - -1.77 -10.56 2.52 - - - - - - -3.03 - - - 3.04 - 3.42 - -
AAL21908 (tnpA_4)
 -0.54 -1.11 -1.46 -1.09 -1.02 -2.8 -0.86 -1.85 -1.8 -1.85 -0.64 -2.31 -1.02 -2.62 0.97 -5.35 -1.24 -0.65 -0.27 -0.18 -1.72 -3.99 -6.26 3.04 -2.67 -1.94 -2.24 -0.67 -1.68 -1.88 -2.25 -0.79 -1.47 -5.36 -0.41 -2.84 3.92 -1.27 -0.46
AAL21998 (STM3124)
 -2.23 0.67 -0.74 -0.96 -2.81 -3.0 -1.5 -0.51 -1.22 -0.06 -0.34 -4.19 -1.58 -1.44 -2.48 -2.43 3.06 -1.5 -1.26 -0.84 -2.14 -0.06 -1.94 1.61 -2.07 -0.4 -3.29 -2.05 -3.23 -1.34 -1.9 -3.71 -2.81 -2.37 1.32 -3.05 3.54 -1.12 -3.47
AAL22250 (yhdT)
 0.3 0.1 -1.42 -0.93 -1.22 -2.68 0.52 -0.55 -0.75 -1.44 0.32 1.02 -0.26 0.12 -1.44 -1.27 -1.36 -0.75 0.09 -0.27 -1.43 -1.39 -0.57 2.63 -1.07 -0.73 0.08 -0.92 -0.7 -3.01 -1.43 -1.24 -0.22 -1.49 -0.44 -0.1 2.83 -1.13 -0.02
AAL22341 (tnpA_5)
 -0.54 -1.11 -1.46 -1.09 -1.02 -2.8 -0.86 -1.85 -1.8 -1.85 -0.64 -2.31 -1.02 -2.62 0.97 -5.35 -1.24 -0.65 -0.27 -0.18 -1.72 -3.99 -6.26 3.04 -2.67 -1.94 -2.24 -0.67 -1.68 -1.88 -2.25 -0.79 -1.47 -5.36 -0.41 -2.84 3.92 -1.27 -0.46
AAL22513 (STM3653)
 -0.71 0.32 -0.32 -1.27 -0.78 -2.76 -0.11 -0.53 -0.5 -1.02 0.24 -3.06 -1.11 -0.76 -0.21 -1.8 -0.2 0.53 0.21 0.61 -1.4 -1.34 -2.53 1.3 -1.34 -0.66 -1.59 -0.51 -1.28 -0.87 -0.56 -1.63 -0.82 -1.5 -0.17 -2.05 3.73 -0.33 -1.58
AAL23135 (tnpA_6)
 -0.54 -1.11 -1.46 -1.09 -1.02 -2.8 -0.86 -1.85 -1.8 -1.85 -0.64 -2.31 -1.02 -2.62 0.97 -5.35 -1.24 -0.65 -0.27 -0.18 -1.72 -3.99 -6.26 3.04 -2.67 -1.94 -2.24 -0.67 -1.68 -1.88 -2.25 -0.79 -1.47 -5.36 -0.41 -2.84 3.92 -1.27 -0.46
AAL23140 (STM4316)
 -1.55 -0.63 0.06 -4.06 -2.61 -2.99 -1.67 -0.3 -1.95 0.33 -0.16 -3.93 -0.91 -2.29 -6.11 1.48 -1.1 -3.32 -4.11 -2.26 -0.88 -1.97 -1.01 2.16 -0.6 -3.02 -4.06 -0.59 -4.75 -5.59 1.74 -0.75 -5.53 1.4 -3.14 -3.88 3.76 -0.73 -1.52
AAL23185 (yjeT)
 0.85 0.08 0.14 -1.22 -0.74 -0.74 -1.06 -0.59 -0.6 -2.53 0.05 0.1 1.06 -0.3 -3.11 -0.78 -2.29 -4.3 -2.05 -3.36 -0.17 -1.62 -0.7 2.76 -0.5 -1.29 -0.06 0.76 -1.7 -1.8 -2.33 0.42 -2.13 -0.9 -0.8 -1.38 2.65 -0.64 1.0

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.