Heatmap: Cluster_64 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
ATCC_14028
SL1344
ATCC_14028,E-stationary,WT
14028s
ATCC_14028,Log,rpsL*_mut
14028s,mLPM
opgGH_mut
LT2
Florfenicol
NCTC_12023,37_C
Chlortetracycline
SL1344,NarS_defic
ATCC_14028,E-stationary,rpsD*_mut
LT2,ridA
fliA_del
High-patho
LT2,Cell_susp_cult
14028s,hilC_del,pBAD24
14028s,sprB_del,pBAD24
14028s,pBAD24
gastro
hfq_mut
Low-patho,42C
plank_cells
ATCC_14028,gastro
Typh_14028s,Expo_phase
biofilm,cpxR_mut
14028s,typhoid
14028s,rtcR
Typh_14028s
infection
ATCC_14028,Log,WT
14028s,rtcB
High-patho,42C
LT2,Cell_susp_cult,Rho_Y80C
plank_cells,cpxR_mut
biofilm
ATCC_14028,E-stationary,rpsL*_mut
ATCC_14028,Log,rpsD*_mut
AAL21579 (STM2691)
-1.84 1.31 -0.24 -1.94 -2.11 0.3 -2.19 -0.77 0.98 -2.67 0.58 -2.84 1.1 -1.08 -1.7 -1.19 -2.3 -1.9 -2.09 -1.76 0.76 -1.6 -3.09 2.54 2.24 -1.92 -1.36 -2.14 -2.19 -5.28 -2.55 -1.53 -2.46 -1.71 -0.91 -1.73 3.05 -2.29 -0.74
AAL21580 (STM2692)
-1.09 1.12 0.16 -1.75 -1.66 -0.41 -0.9 -0.07 0.64 -1.16 0.82 -1.97 1.05 -0.18 -1.06 -0.28 -1.36 -0.94 -1.32 -0.91 0.53 0.01 -1.24 1.69 1.97 -1.13 -1.55 -0.74 -1.56 -2.25 -0.3 -0.75 -1.77 -0.23 -0.37 -1.26 2.38 -0.96 -0.32

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.