Heatmap: Cluster_33 (HCCA)

View as: (view zlog-transformed or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Showing raw values)

Gene
55488,Cefotaxime
AH1263,WT,TSB
ATCC25923,DMSO
ATCC29213,Biofilm
ATCC6538,1/4MIC BITC
HG001,WT,L-exponential
IPLA1,NaPi
IPLA1,NaPi + LysH5
IPLA1,phage phiIPLA-RODI
MRSA BD02-25,WT
NCTC8325,RSH
NCTC8325,RSH,Mup
NCTC8325,WT
NCTC8325,WT,E-Log
NCTC8325,WT,Mup
Newman,Exponential
Newman,TSB
Newman,TSB + 1 mM MnCl2
Newman,WT
Newman,WT,Angeli's salt,Exponential
Newman,WT,Calprotectin,Exponential
Newman,WT,Exponential
Newman,WT,Na2S,Exponential
NRS384,WT
NRS384-rpoB-H481N-SCV
RN4220,WT,E-Log
RPMI + 10%LB,Exponential
TSB,Exponential
TSB,L-exponential
TSB,Stationary
UAMS1,WT
USA100,WT,CA-MHB
USA100,WT,CA-MHB,0.5ug/mL Naf
USA100,WT,CA-MHB,0ug/mL Naf
USA100,WT,CA-MHB,15ug/mL Naf
USA100,WT,CA-MHB,20ug/mL Naf
USA100,WT,RPMI + 10%LB
USA100,WT,RPMI + 10%LB,0.25ug/mL Naf
USA100,WT,RPMI + 10%LB,0.5ug/mL Naf
USA100,WT,RPMI + 10%LB,0ug/mL Naf
USA300 LAC,CA-MHB
USA300 LAC,CA-MHB,0.38 ug/mL Naf
USA300 LAC,RPMI + 10%LB
USA300 MRSA,dpurR
USA300 MRSA,WT
USA300 P23,Exponential
USA300 P23,Floxuridine,Exponential
USA300 P23,streptozotocin,Exponential
USA300 P23,WT,Exponential
USA300,0.0625ug/mL Naf
USA300,0.063 ug/mL Naf
USA300,0.1ug/mL Naf
USA300,0.5ug/mL Naf
USA300,0ug/mL Naf
USA300,1.0 ug/mLNaf
USA300,1.0ug/mL Naf
USA300,15ug/mL Naf
USA300,CA-MHB
USA300,CA-MHB,0.45ug/mL Van
USA300,CA-MHB,0.65ug/mL Van
USA300,CA-MHB,0.7ug/mL Van
USA300,CA-MHB,0.8ug/mL Van
USA300,CA-MHB,0ug/mL Van
USA300,delta agr::tet,DMSO
USA300,delta-mgrA::tet
USA300,DMSO
USA300,Exponential
USA300,RPMI + 10%LB
USA300,RPMI + 10%LB,0.031 ug/mL Naf
USA300,RPMI + 10%LB,0.063 ug/mL Naf
USA300,RPMI + 10%LB,0.1ug/mL Naf
USA300,RPMI + 10%LB,0.375ug/mL Van
USA300,RPMI + 10%LB,0.45ug/mL Van
USA300,RPMI + 10%LB,0.6ug/mL Van
USA300,RPMI + 10%LB,0.8ug/mL Van
USA300,RPMI + 10%LB,0ug/mL Naf
USA300,RPMI + 10%LB,0ug/mL Van
USA300,RPMI + 10%LB,15ug/mL Naf
USA300,Stationary
USA300,WT
USA300,WT,10 uM Linoleic Acid
USA300,WT,Apicidin
USA300,WT,DMSO
USA300,WT,Log
USA300,WT,RPMI + 10%LB
WT,Exponential
WT,L-exponential
WT,Mid-Log
WT,TSB,Exponential
WT,TSB,L-exponential
WT,TSB,Stationary
XN108,ccpA gene knock out
CPC51307 (cydC)
113.41 58.19 194.86 112.36 39.71 76.38 84.16 85.45 61.23 21.3 35.7 40.39 27.72 81.43 26.4 96.73 81.26 78.07 113.11 412.51 108.81 83.27 173.2 83.27 69.35 79.35 63.99 30.1 43.16 69.5 21.52 30.7 24.79 24.35 26.37 27.03 56.54 50.58 62.6 38.25 32.0 41.34 39.41 76.45 71.77 47.15 142.95 79.69 51.89 27.79 21.24 59.59 33.05 31.15 38.66 37.88 38.81 37.25 31.45 23.31 23.41 25.73 23.09 38.79 66.53 89.7 113.2 63.94 47.8 54.27 52.17 53.59 53.41 47.19 54.69 51.67 47.75 65.21 54.11 83.12 64.07 24.98 37.28 65.06 64.43 53.85 71.07 33.37 49.68 45.8 67.24 60.76
CPC51349 (cydD)
92.96 91.55 145.8 80.52 29.69 91.16 56.58 57.71 122.44 30.7 33.72 31.28 24.07 64.85 26.31 108.87 84.78 86.77 110.69 356.95 116.5 92.92 174.18 63.33 52.8 57.54 52.83 29.19 38.74 57.56 13.02 25.86 19.57 19.19 19.98 21.15 46.9 39.42 48.79 30.46 31.98 43.16 33.22 88.01 105.3 55.32 114.21 72.78 66.58 26.16 20.92 51.03 27.41 24.85 36.65 29.96 31.61 49.41 27.89 17.89 19.03 20.7 18.92 41.71 67.68 117.12 91.88 53.09 43.45 44.59 52.19 42.33 40.24 40.07 44.83 53.46 36.83 58.03 58.87 58.2 44.32 34.12 51.75 68.53 56.2 41.36 48.67 56.15 39.3 42.03 53.85 51.26

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)