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Heatmap: Cluster_20 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
25RC,0.25% glucose
3RC,0.25% glucose
58RC,0.25% glucose
ATCC 29212,0% glucose
ATCC 29212,0.15% glucose
ATCC 29212,0.25% glucose
ATCC 29212,15min
ATCC 29212,ampicillin,15min
ATCC 29212,bacitracin,15min
ATCC 29212,chloramphenicol,15min
ATCC 29212,erythromycin,15min
ATCC 29212,kanamycin,15min
ATCC 29212,lincomycin,15min
ATCC 29212,ofloxacin,15min
ATCC 33186,TSB
ATCC 33186,pH10
EF16C185,37C,4h,20mlMH
EF16C185-O2,37C,4h,20mlMH
F4,37C,4h,20mlMH
F4-11,37C,4h,20mlMH
OG1RF
OG1RF,(p)ppGpp0
OG1RF,(p)ppGpp0 codY-KO
OG1RF,Untreated,0min
OG1RF,Untreated,10min
OG1RF,Untreated,20min
OG1RF,Untreated,40min
OG1RF,WT
OG1RF,cellobiose
OG1RF,clpP-KO
OG1RF,gentiobiose
OG1RF,glucose
OG1RF,pCF10
OG1RF,pCIE
OG1RF,pDAK1010A,highFstpAD1
OG1RF,pDAK1010E,highFstEF0409
OG1RF,pDAK1010E,lowFstEF0409
OG1RF,phageVPE25,0min
OG1RF,phageVPE25,10min
OG1RF,phageVPE25,20min
V649,LVX
V649,Untreated
V649,pGR-IS256
V649,pGR-tetM
AEA92690 (yaaA)
 -1.34 -3.02 -3.41 0.87 0.62 -1.62 -1.3 -1.37 -1.82 -1.82 -1.73 -1.14 -1.76 -1.49 -0.61 -0.47 -2.87 -3.65 -2.95 -2.1 2.96 2.19 2.26 -0.91 -1.85 -1.45 -1.99 0.91 -0.23 -3.3 0.26 -0.37 0.91 -0.09 -0.02 -0.54 -0.02 -0.93 -1.35 -1.46 0.77 0.1 -0.34 0.34
AEA93096 (OG1RF_10409)
 - 2.05 1.82 - - - - - - - - - - - - - -0.45 -2.6 - - 3.52 2.79 1.68 -3.13 - -1.1 -1.44 -0.69 -0.25 0.17 -0.02 -2.25 -1.65 0.65 -0.88 0.94 1.81 -1.74 -2.05 -0.43 - - - -
AEA93180 (OG1RF_10493)
 0.92 1.58 1.59 -5.44 -1.41 1.26 -4.43 -4.38 -3.73 -4.08 -3.54 -4.56 -3.0 -4.51 -0.35 -3.77 -4.98 -5.82 -4.46 -4.67 0.34 -2.09 -1.16 -2.97 -3.56 -4.17 -3.69 -0.28 -3.94 -1.09 -4.0 -3.5 -1.1 -4.58 3.07 -4.01 -4.53 0.88 2.78 3.27 -1.78 -4.78 -2.87 -2.56
AEA93181 (OG1RF_10494)
 1.1 2.5 2.68 -5.88 -1.33 1.23 -4.54 -3.46 -3.56 -3.28 -3.58 -3.84 -3.04 -4.02 -0.53 -3.92 -5.46 -6.54 -4.58 -4.58 -0.47 -0.85 -0.22 -2.2 -3.0 -3.36 -3.18 -0.91 -3.89 -1.83 -3.75 -3.27 -1.5 -4.34 2.44 -4.0 -4.08 0.41 2.46 3.07 -1.89 -5.05 -3.17 -2.69
AEA93183 (glnP)
 -1.47 -0.82 -0.77 -3.86 -2.06 -1.2 -0.29 -0.41 -0.96 -0.25 0.12 -0.43 -0.19 -0.46 -1.5 -0.22 -1.09 -3.88 -4.95 -3.43 0.37 1.6 2.08 1.07 0.9 0.66 0.35 -0.48 0.42 -1.08 -0.41 0.54 1.02 0.94 0.35 -0.32 0.0 0.53 0.85 0.61 -1.89 -0.91 -1.44 -1.19
AEA93380 (OG1RF_10693)
 2.13 0.38 1.47 - 2.07 -0.52 - - - - - - - - 1.39 - - - 0.37 - 0.32 - -0.09 0.11 - 0.72 0.21 -1.52 - -2.68 - - 0.06 0.31 0.81 - 0.64 -0.49 2.5 3.04 - - - -
AEA93381 (OG1RF_10694)
 - - - - - 1.4 - - - - - - - - - - - - -0.12 - 2.29 2.55 2.05 1.41 1.28 1.15 -0.58 0.29 -1.39 0.24 -0.38 -2.53 1.85 -0.51 -0.43 1.42 1.1 0.72 0.39 0.02 - - - -
AEA93382 (OG1RF_10695)
 - - - - - - - - - - - - - - - - - - - - -1.57 3.17 3.51 1.22 0.44 0.57 0.13 0.1 -2.49 -0.47 -0.94 -2.05 0.53 -0.6 -2.08 1.15 1.04 1.07 1.45 1.51 - - - -
AEA93425 (sirR)
 0.16 0.16 0.02 0.6 -0.03 0.58 -1.18 -1.01 -1.14 -1.15 -0.8 -1.07 -0.66 -0.87 -0.39 -0.3 -2.26 -2.83 -3.13 -2.99 0.62 1.05 1.15 0.82 0.54 -0.04 -0.19 0.13 1.22 0.04 0.0 -0.76 0.4 0.23 0.92 0.16 0.15 0.34 0.81 0.93 -0.87 -1.07 -1.08 -0.9
AEA93472 (OG1RF_10785)
 - - - - - - - - - - - - - - - - - - - - 1.93 1.51 2.71 -0.57 0.16 -0.7 0.21 -0.09 -1.01 0.29 -2.2 -1.62 -0.12 -0.52 0.36 -0.55 -0.4 1.97 2.42 3.38 - - - -
AEA93473 (OG1RF_10786)
 - - - - - - - - - - - - - - - - - - - - 3.02 1.32 2.33 -1.78 -0.02 -0.58 -0.09 -0.41 -2.16 0.28 -0.82 -1.14 0.42 -0.59 -0.31 0.59 0.52 2.26 2.33 2.74 - - - -
AEA93474 (OG1RF_10787)
 - - - - - - - - - - - - - - - - - - - - 1.22 0.7 1.95 -0.39 0.18 -0.59 0.6 -0.26 0.8 -1.03 -0.04 -0.33 -0.4 -3.03 -0.94 -0.65 - 1.96 3.0 3.74 - - - -
AEA93475 (OG1RF_10788)
 - - - - - - - - - - - - - - - - - - - - 1.96 1.68 1.58 -0.27 -0.63 -0.25 -1.17 0.09 -0.28 0.37 0.56 0.45 -0.17 -1.52 -0.0 0.42 0.51 1.88 2.49 3.44 - - - -
AEA93476 (OG1RF_10789)
 - - - - - - - - - - - - - - - - - - - - 2.44 0.42 1.17 -0.16 1.26 0.38 0.04 -0.74 1.68 -0.42 0.15 0.1 0.45 -0.14 0.68 0.19 -0.07 1.62 2.32 3.1 - - - -
AEA93478 (OG1RF_10791)
 - - - - - - - - - - - - - - - - - - - - - 0.87 2.39 -0.49 -0.43 -0.46 - 1.64 1.13 0.61 -1.76 0.16 1.25 - 0.21 - - 2.91 1.58 3.64 - - - -
AEA93481 (OG1RF_10794)
 - - - - - - - - - - - - - - - - - - - - 0.84 1.24 2.45 - 1.23 -1.38 1.02 0.87 0.47 0.35 -0.74 - - 1.1 - -0.18 1.08 1.58 1.24 3.81 - - - -
AEA93486 (OG1RF_10799)
 - - - - - - - - - - - - - - - - - - - - 1.68 1.73 -0.59 0.47 0.52 2.08 2.89 0.08 - 0.39 1.35 0.82 1.87 -0.36 - 0.7 - 1.87 0.52 2.18 - - - -
AEA93487 (OG1RF_10800)
 - - - - - - - - - - - - - - - - - - - - 0.79 1.93 2.86 0.06 1.2 0.19 -0.02 0.38 0.74 0.29 -0.7 -0.47 0.28 -0.5 -1.03 -1.01 -1.49 2.72 2.29 2.44 - - - -
AEA93488 (OG1RF_10801)
 - - - - - - - - - - - - - - - - - - - - 0.41 1.93 2.35 -0.06 1.57 0.24 0.17 -0.24 -1.14 0.33 -1.54 -2.33 -0.41 -0.58 -0.71 -1.41 -0.3 3.03 2.85 2.55 - - - -
AEA93489 (OG1RF_10802)
 - - - - - - - - - - - - - - - - - - - - 0.74 1.37 2.07 -1.08 1.2 -0.47 0.43 0.2 -0.57 0.53 -0.81 -1.34 0.07 -0.16 - -0.63 -1.23 3.17 2.92 2.78 - - - -
AEA93490 (OG1RF_10803)
 - - - - - - - - - - - - - - - - - - - - -0.34 1.1 2.49 -1.27 0.71 -0.76 0.6 0.19 -1.13 0.52 0.09 -1.32 0.34 0.07 0.68 0.05 -0.1 2.96 2.76 2.66 - - - -
AEA93492 (OG1RF_10805)
 - - - - - - - - - - - - - - - - - - - - 1.7 3.02 3.61 -1.01 -0.14 0.02 0.42 -0.72 -1.71 -0.8 -0.11 -1.59 -0.39 1.01 -0.01 0.85 2.07 -0.61 0.87 0.71 - - - -
AEA93493 (OG1RF_10806)
 - - - - - - - - - - - - - - - - - - - - 0.71 2.67 3.4 -0.09 0.96 -1.48 1.18 0.33 0.45 0.35 0.23 -0.87 -1.61 1.35 0.37 1.17 1.57 0.11 -0.02 1.49 - - - -
AEA93494 (gst)
 - - - - - - - - - - - - - - - - - - - - 2.0 2.0 2.57 -0.57 0.49 0.37 0.99 -0.83 0.68 -0.51 -0.4 -0.71 0.63 1.1 0.81 1.5 1.71 -0.85 1.41 2.52 - - - -
AEA93495 (OG1RF_10808)
 - - - - - - - - - - - - - - - - - - - - 1.03 0.95 1.25 -0.49 1.39 0.42 1.18 -0.14 -0.18 0.52 0.84 -1.98 1.59 0.95 1.71 1.77 1.47 0.28 1.93 2.59 - - - -
AEA93496 (OG1RF_10809)
 - - - - - - - - - - - - - - - - - - - - 1.07 0.26 0.1 0.56 2.16 1.14 1.62 -0.03 -0.69 0.29 0.66 -1.72 1.47 0.36 0.83 1.1 -0.53 1.34 2.26 2.94 - - - -
AEA93498 (cna)
 - - - - - - - - - - - - - - - - - - - - 0.98 0.89 0.86 0.21 2.04 1.17 0.97 0.25 -1.19 0.77 0.15 -1.47 2.09 -0.0 1.38 1.01 0.17 1.26 2.2 2.61 - - - -
AEA93501 (OG1RF_10814)
 - - - - - - - - - - - - - - - - - - - - 3.3 0.73 1.95 0.27 0.61 0.74 0.47 1.37 -0.66 1.76 1.3 0.54 0.87 -1.32 -0.05 0.15 0.54 0.95 1.12 1.29 - - - -
AEA93504 (malR)
 - - - - - - - - - - - - - - - - - - - - 1.8 -0.61 -0.2 0.71 2.32 1.72 1.53 0.51 0.45 1.02 0.47 0.89 1.1 -0.04 -0.31 0.26 0.19 1.33 1.99 2.42 - - - -
AEA93512 (OG1RF_10825)
 - - - - - - - - - - - - - - - - - - - - 1.91 2.23 1.76 1.57 0.65 -0.15 0.38 -0.23 -0.07 -1.6 0.16 -1.69 1.23 1.77 1.3 1.68 1.19 1.61 1.34 1.36 - - - -
AEA93513 (OG1RF_10826)
 - - - - - - - - - - - - - - - - - - - - 2.67 1.41 1.71 1.03 0.85 0.3 1.5 -0.24 -0.03 -0.66 1.61 -0.2 0.65 1.3 1.07 1.07 1.17 0.8 1.31 1.45 - - - -
AEA93518 (OG1RF_10831)
 - - - - - - - - - - - - - - - - - - - - -0.15 2.67 3.04 0.71 1.07 -0.76 0.63 0.71 -1.08 0.62 0.16 -2.12 1.25 0.41 1.22 0.48 0.44 0.72 2.01 1.66 - - - -
AEA93609 (OG1RF_10922)
 -0.78 -1.15 -1.43 -0.78 -1.76 -0.18 -1.49 -1.62 -1.57 -1.7 0.36 -1.31 -0.49 -1.57 -1.76 -2.05 -0.11 -1.54 -3.35 -3.83 -0.06 1.85 2.5 0.35 0.95 0.17 -0.58 0.08 0.81 0.49 -0.36 0.14 0.01 0.61 1.15 0.74 0.85 -0.33 0.65 0.55 -1.58 -1.44 -1.39 -1.62
AEA93793 (OG1RF_11106)
 - - - - - - - - - - - - - - - - - - - - 1.21 0.82 0.81 -0.02 -0.19 -2.8 -1.14 -0.58 -1.95 -1.43 -0.23 -1.82 -0.92 -1.31 - -0.05 -1.34 0.03 3.48 4.23 - - - -
AEA93794 (OG1RF_11107)
 - - - - - - - - - - - - - - - - - - - - 0.71 -0.26 0.29 0.07 -2.04 -2.48 -1.0 -2.05 -3.8 -2.09 -1.58 -3.45 -2.62 -1.91 -1.84 -0.93 -1.66 0.55 3.8 4.35 - - - -
AEA93796 (OG1RF_11109)
 - - - - - - - - - - - - - - - - - - - - 0.47 -0.01 0.24 0.48 0.37 -1.42 -0.87 -1.33 -0.68 -1.92 -1.26 -1.65 -0.84 -1.33 -1.2 -1.12 -0.47 0.95 3.55 4.22 - - - -
AEA93798 (OG1RF_11111)
 - - - - - - - - - - - - - - - - - - - - 0.09 1.07 1.02 -0.09 1.76 0.75 0.56 0.26 0.36 0.6 -0.61 -0.24 1.4 0.28 1.2 0.69 1.22 1.5 2.47 2.88 - - - -
AEA93800 (OG1RF_11113)
 - - - - - - - - - - - - - - - - - - - - -2.55 1.67 1.66 0.97 1.72 -0.93 1.49 0.28 -0.34 1.01 0.22 -0.14 1.42 0.53 1.41 0.74 0.8 0.64 2.18 2.71 - - - -
AEA93876 (ziaA)
 1.27 2.47 2.57 -3.85 -0.22 1.76 -2.92 -3.04 -3.09 -2.63 -2.04 -3.01 -2.01 -3.08 -0.51 -2.55 -3.81 -3.11 -3.89 -3.1 0.06 -1.19 -2.65 -3.05 -4.33 -4.92 -1.68 -0.06 -3.8 0.53 -2.0 -2.29 -0.36 -4.72 1.95 -3.59 -4.48 0.87 2.12 2.49 -0.41 -4.04 -1.28 -1.24
AEA94232 (OG1RF_11545)
 - - - - - - - - - - - - - - - - - - - - -0.33 0.91 1.59 0.8 0.55 0.22 0.96 0.89 -0.02 0.99 -0.45 -0.37 1.59 0.39 0.35 0.53 -0.41 2.06 2.3 3.14 - - - -
AEA94233 (OG1RF_11546)
 - - - - - - - - - - - - - - - - - - - - 1.19 1.15 1.93 0.61 -0.21 -0.02 -0.17 1.83 -0.56 1.67 -0.23 -0.15 1.96 -0.34 -0.17 0.18 -0.36 1.94 2.46 2.44 - - - -
AEA94234 (OG1RF_11547)
 - - - - - - - - - - - - - - - - - - - - 0.83 1.12 2.36 -0.13 1.01 -0.1 0.83 0.88 0.12 0.76 -0.62 -0.2 1.19 -0.35 0.55 0.42 0.35 1.7 1.69 2.7 -0.69 -0.81 0.24 -0.6
AEA94235 (glpF)
 - - - - - - - - - - - - - - - - - - - - 0.29 0.82 1.64 0.87 1.03 0.9 0.16 1.07 0.45 1.73 -0.13 0.82 1.28 -1.16 0.73 0.46 -1.5 1.46 2.21 2.36 -0.06 -2.13 -0.43 -0.23
AEA94289 (OG1RF_11602)
 -0.36 -0.58 -0.63 0.32 -0.09 -0.05 -0.05 -0.07 -0.54 -0.36 -0.53 -0.12 -0.47 -0.1 -0.23 0.42 -1.19 -0.58 -2.01 -0.87 0.2 -0.52 -1.64 0.17 1.13 0.52 0.14 -0.52 0.29 -0.99 -0.27 0.19 -0.43 -0.03 1.68 -0.63 -0.26 1.29 1.31 1.24 -0.99 -1.02 -0.96 -1.34
AEA94306 (OG1RF_11619)
 - - - - - - - - - - - - - - - - -1.23 -2.05 - - 3.26 1.93 1.62 -0.48 -0.51 -0.25 0.32 0.19 0.8 -0.17 2.05 1.4 1.79 0.59 -0.06 0.35 0.62 0.48 0.4 0.48 - - - -
AEA94403 (rgpB)
 -2.56 0.34 -0.13 - - - - - - - - - - - - - - - - - 1.41 2.9 3.48 -0.53 0.0 0.73 1.61 -0.16 -1.96 -0.74 0.37 -3.44 -0.02 0.79 0.45 0.66 1.17 -0.23 0.29 -0.28 - - - -
AEA94405 (OG1RF_11718)
 -7.22 0.67 0.56 - - - - - - - - - - - - - -1.8 -3.28 - - 0.6 2.85 2.95 -0.16 0.29 0.68 1.32 0.6 -0.34 0.06 0.73 0.75 0.89 -0.54 -0.65 -0.58 -0.48 0.7 0.94 0.81 -0.88 -2.35 -1.59 -1.93
AEA94499 (OG1RF_11812)
 - -0.28 0.68 - - - - - - - - - - - -2.86 -1.83 - - - - 1.75 2.29 2.15 0.88 0.82 0.01 0.17 0.32 1.19 0.26 0.94 1.08 1.33 0.1 0.89 0.05 0.06 0.54 1.34 1.31 - - - -
AEA94500 (OG1RF_11813)
 - 1.98 0.71 - - - - - - - - - - - - -1.8 - - - - 1.22 2.38 2.56 1.02 0.65 -0.5 0.45 -0.3 0.74 -1.25 0.19 -0.28 -0.34 -0.9 0.03 0.47 0.17 0.93 1.95 1.83 - - - -
AEA94501 (OG1RF_11814)
 -3.56 0.93 1.0 - - - - - - - - - - - -1.1 -1.46 - - - - 1.88 1.26 1.49 0.45 -0.33 -1.6 -0.89 -0.35 2.28 -0.67 0.85 -0.45 0.26 0.63 1.27 1.1 1.24 0.07 1.77 2.12 - - - -
AEA94502 (OG1RF_11815)
 - - - - - - - - - - - - - - - - - - - - 0.47 2.88 3.32 0.39 -1.23 -1.58 0.19 1.27 -0.51 0.59 1.74 0.83 0.9 -0.24 0.39 0.94 1.17 -0.04 0.46 0.84 - - - -
AEA94504 (OG1RF_11817)
 - 2.36 2.18 - - - - - - - - - - - -0.8 -0.77 - - - - -0.84 2.6 2.95 -1.09 -1.03 -1.48 -0.18 0.89 -2.21 0.66 0.41 -0.82 -1.13 -0.29 0.16 -0.98 0.73 -0.1 0.98 1.85 - - - -
AEA94510 (OG1RF_11823)
 - - - - - - - - - - - - - - - - - - - - 2.75 2.48 0.75 0.47 0.41 0.38 2.15 0.36 0.12 1.44 2.36 0.02 0.98 0.39 0.19 0.26 0.3 0.58 0.31 -0.36 - - -7.95 -
AEA94664 (licT2)
 -0.53 -0.33 -0.29 -3.08 -0.35 0.33 -1.22 -1.17 -0.79 -1.08 -0.73 -1.21 -0.98 -1.1 -1.19 -0.37 -0.44 -3.17 -2.76 -2.26 2.02 0.6 -1.13 -0.27 -1.0 -0.71 0.62 0.3 0.59 1.16 1.08 0.99 -0.18 -0.94 -1.14 -0.38 -0.69 1.7 2.04 1.97 -4.73 -6.67 -5.73 -5.53
AEA94792 (lplA2)
 -0.19 0.07 0.07 -1.15 -0.53 -0.27 -1.38 -1.45 -1.44 -1.38 -0.97 -1.24 -1.59 -1.35 -0.65 -1.06 -0.53 -0.03 -1.98 -0.56 -0.54 1.92 1.69 0.89 0.63 0.35 -0.03 0.01 1.06 0.9 0.24 0.75 0.53 -0.8 -0.58 -0.99 -0.88 0.32 0.87 0.97 -0.65 -0.62 -0.98 -1.27
AEA94793 (OG1RF_12106)
 -0.55 -0.63 -0.8 -0.86 -0.92 -0.46 -1.21 -1.08 -1.31 -1.21 -0.67 -1.08 -1.02 -1.31 -0.73 -0.94 -1.37 -0.85 -2.57 -1.82 -0.2 1.8 1.7 1.1 0.65 0.36 0.08 -0.2 1.42 0.52 0.43 0.48 0.82 -0.25 -0.27 -0.6 -0.24 0.46 1.01 1.12 -0.69 -0.49 -1.22 -1.34
AEA94923 (OG1RF_12236)
 - - - - - - - - - - - - - - - - - - - - 1.5 2.93 3.4 0.05 -0.65 -1.68 1.16 -0.82 -1.42 -0.76 -0.09 -1.95 0.86 -0.14 1.77 1.01 1.62 0.36 0.84 0.79 - - - -
AEA95042 (OG1RF_12355)
 -0.55 -0.7 -0.62 1.21 0.31 -0.52 -0.43 -0.57 0.16 -0.42 -0.61 -0.51 -0.07 -0.56 -1.74 0.51 -0.43 -0.77 -1.92 -1.66 -0.32 1.23 1.62 0.59 0.67 -0.33 -0.76 0.29 0.89 1.25 -0.12 0.33 -0.9 -1.18 -0.39 -0.61 -0.59 0.43 0.57 0.44 -0.02 -0.92 -1.35 -1.36
AEA95181 (chpA)
 0.91 0.09 0.19 1.72 0.47 0.19 -1.16 -1.2 -0.66 -0.94 -0.91 -0.9 -0.45 -0.95 -0.37 -1.03 -1.05 1.07 -0.83 0.06 -0.12 1.23 1.91 0.65 -0.1 -1.8 -2.61 0.22 0.76 0.75 0.24 -0.01 -0.89 -0.95 -0.48 -0.6 -1.07 0.41 0.8 0.66 - - - -

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.