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Heatmap: Cluster_29 (HCCA)

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Gene
25RC,0.25% glucose
3RC,0.25% glucose
58RC,0.25% glucose
ATCC 29212,0% glucose
ATCC 29212,0.15% glucose
ATCC 29212,0.25% glucose
ATCC 29212,15min
ATCC 29212,ampicillin,15min
ATCC 29212,bacitracin,15min
ATCC 29212,chloramphenicol,15min
ATCC 29212,erythromycin,15min
ATCC 29212,kanamycin,15min
ATCC 29212,lincomycin,15min
ATCC 29212,ofloxacin,15min
ATCC 33186,TSB
ATCC 33186,pH10
EF16C185,37C,4h,20mlMH
EF16C185-O2,37C,4h,20mlMH
F4,37C,4h,20mlMH
F4-11,37C,4h,20mlMH
OG1RF
OG1RF,(p)ppGpp0
OG1RF,(p)ppGpp0 codY-KO
OG1RF,Untreated,0min
OG1RF,Untreated,10min
OG1RF,Untreated,20min
OG1RF,Untreated,40min
OG1RF,WT
OG1RF,cellobiose
OG1RF,clpP-KO
OG1RF,gentiobiose
OG1RF,glucose
OG1RF,pCF10
OG1RF,pCIE
OG1RF,pDAK1010A,highFstpAD1
OG1RF,pDAK1010E,highFstEF0409
OG1RF,pDAK1010E,lowFstEF0409
OG1RF,phageVPE25,0min
OG1RF,phageVPE25,10min
OG1RF,phageVPE25,20min
V649,LVX
V649,Untreated
V649,pGR-IS256
V649,pGR-tetM
AEA92897 (hslO)
 346.94 322.89 292.93 25.7 160.69 464.74 73.51 67.69 148.84 92.94 99.04 77.11 128.19 69.51 16.63 55.44 30.67 3.51 12.73 8.18 219.57 369.76 481.74 189.76 329.93 150.35 140.33 75.63 249.06 50.36 78.05 86.34 140.05 165.5 156.73 149.78 156.97 196.53 396.28 472.84 56.22 36.56 62.82 57.14
AEA92898 (dus)
 393.31 562.17 509.93 53.95 388.05 572.01 97.32 91.39 204.47 119.74 142.99 95.98 146.22 95.18 32.86 144.47 63.36 21.59 24.92 25.88 226.78 339.1 435.72 266.92 500.64 176.44 226.49 130.22 329.17 132.28 150.49 260.4 258.76 203.67 195.45 172.3 179.33 265.01 606.92 656.09 72.98 53.13 93.46 69.79
AEA92910 (OG1RF_10223)
 276.13 343.74 314.9 175.68 63.63 390.02 38.68 36.15 42.62 54.46 77.8 38.48 86.27 47.57 78.05 44.0 17.73 11.59 8.25 12.13 17.43 144.72 175.84 91.6 204.34 58.34 81.18 68.59 89.21 53.37 51.4 72.84 67.99 69.8 59.72 68.3 71.33 64.7 236.4 385.8 94.47 21.6 32.61 30.68
AEA92927 (copY)
 778.71 914.1 818.06 111.17 39.66 1014.22 5.89 4.82 6.49 7.52 7.22 7.17 9.42 3.66 33.15 13.69 13.5 16.94 6.65 6.27 288.91 11.83 12.28 279.1 18.99 4.14 6.22 16.24 31.19 39.26 24.76 11.89 19.85 12.34 38.01 30.25 24.81 344.47 602.16 759.3 32.95 9.47 15.09 32.07
AEA92928 (actP)
 676.79 870.38 779.88 97.62 81.98 866.14 15.26 14.96 16.38 20.93 19.59 15.68 21.46 14.01 51.33 38.93 15.48 29.55 20.92 29.59 157.84 31.55 28.55 484.38 63.08 18.73 17.5 21.65 37.86 25.62 41.86 50.92 41.25 20.43 50.14 39.82 23.28 406.49 717.93 876.91 47.96 14.25 27.41 42.53
AEA92979 (mtlA)
 50.44 24.38 25.01 6.17 31.79 50.15 14.77 14.48 13.95 15.47 17.34 12.87 16.25 11.47 6.41 5.87 5.74 2.43 14.76 8.11 16.97 30.96 28.33 21.85 17.65 11.41 27.37 13.75 11.77 19.7 13.43 18.51 9.39 8.7 11.05 8.91 9.72 22.29 27.59 27.54 7.95 3.71 12.87 8.09
AEA93036 (dapF)
 190.82 117.59 112.73 69.17 90.13 222.82 34.86 36.8 40.75 33.03 46.16 30.1 36.88 31.02 22.48 56.4 23.0 24.66 12.03 22.9 162.76 63.59 47.22 160.9 94.4 56.63 52.12 21.73 67.41 36.4 58.96 51.7 95.97 63.07 41.75 43.93 58.49 124.94 130.5 151.72 44.91 14.8 22.44 23.68
AEA93128 (OG1RF_10441)
 53.17 36.91 46.62 9.99 21.38 85.39 9.13 5.63 9.99 7.56 22.69 9.88 17.63 10.65 12.16 11.26 3.51 1.82 2.88 2.08 7.28 30.42 46.35 13.36 25.34 19.27 23.13 13.28 15.18 12.19 17.82 18.31 23.86 21.16 12.72 20.85 22.28 38.62 48.48 52.7 18.24 10.42 12.55 9.32
AEA93156 (argF)
 36.35 17.8 16.38 6.14 16.7 38.84 1.08 1.18 1.09 0.89 1.42 0.94 3.92 0.65 1.04 2.76 1.27 1.23 4.42 2.1 26.74 0.57 0.84 0.77 0.93 0.3 0.32 0.73 3.01 0.61 0.73 2.79 0.4 0.24 0.48 0.65 0.36 2.53 5.62 12.5 2.35 0.29 1.48 1.15
AEA93184 (uvrB)
 401.62 530.64 506.69 189.59 239.18 510.44 88.63 83.87 117.74 73.47 74.43 85.14 91.04 147.75 186.63 70.54 26.72 66.39 30.45 49.49 200.27 263.09 269.06 306.08 158.36 85.28 74.95 66.95 135.3 51.7 43.91 63.7 87.9 95.89 91.19 80.96 93.05 195.83 252.0 305.0 295.29 112.06 133.83 217.43
AEA93192 (clpP)
 2835.14 7885.17 7570.43 6872.91 2034.24 3169.11 276.02 293.39 378.9 287.65 287.39 322.83 389.18 251.06 1914.32 1382.7 589.35 1046.98 274.59 352.88 7722.06 1012.34 1583.42 1154.15 1650.7 1027.35 448.43 588.34 1985.98 0.28 1373.26 1461.79 860.66 597.46 877.77 704.45 657.21 800.08 1077.24 1086.57 1143.14 662.94 685.55 2580.64
AEA93276 (OG1RF_10589)
 73.18 74.39 67.84 9.24 70.89 133.26 16.15 14.02 16.87 17.86 29.38 14.5 27.91 12.58 8.26 21.72 31.01 2.88 4.68 5.34 129.71 33.09 37.48 22.75 48.23 36.81 26.59 13.65 18.5 13.85 10.72 20.62 17.52 20.32 35.93 27.93 28.78 29.72 63.8 90.12 8.66 5.02 13.97 14.13
AEA93317 (mvd)
 167.72 290.1 258.37 30.84 242.07 235.97 73.03 69.36 183.42 78.44 90.46 78.38 86.13 72.8 46.44 104.76 20.52 5.22 9.33 11.38 52.31 133.89 164.3 97.02 127.46 132.82 99.29 38.49 67.95 18.39 63.46 114.57 72.19 59.25 40.29 44.31 55.45 102.18 183.07 222.25 76.82 35.51 75.89 60.8
AEA93318 (mvk)
 138.31 199.81 174.42 10.14 87.12 179.71 42.75 39.36 133.85 44.7 65.36 35.43 61.5 43.2 20.36 37.62 3.83 0.95 5.25 3.23 24.05 170.76 205.83 91.85 103.94 81.65 85.2 16.55 33.33 5.29 12.59 18.06 24.24 33.65 28.11 32.91 35.42 69.1 173.52 237.43 97.35 25.69 67.95 86.76
AEA93603 (puuD)
 289.12 299.06 326.15 29.95 38.21 388.95 45.9 42.3 37.68 59.7 68.05 39.76 104.45 41.57 59.29 89.82 22.13 5.44 5.79 7.09 97.89 165.28 199.75 309.26 237.14 110.64 62.77 52.06 173.58 38.25 26.6 33.34 41.33 79.92 50.77 49.81 63.23 198.76 338.01 399.84 85.93 63.63 60.57 90.82
AEA93727 (nusA)
 610.21 429.67 347.95 66.07 441.63 782.94 302.38 297.98 319.65 373.83 476.02 261.33 631.85 273.32 199.51 201.49 255.99 132.93 28.09 141.52 2397.43 463.94 530.38 739.59 533.87 594.65 318.64 222.63 94.47 171.8 138.43 80.72 271.06 356.35 250.5 267.55 307.63 741.44 688.39 702.25 184.06 221.09 275.21 274.33
AEA93729 (rplL)
 770.35 609.98 515.26 34.05 463.9 964.66 399.59 358.0 339.73 498.64 587.6 353.38 781.04 402.16 188.24 228.09 327.57 236.54 43.92 336.84 1668.5 520.49 628.53 843.94 695.71 641.06 382.29 183.01 67.34 142.42 210.4 55.16 241.51 337.53 237.92 243.66 279.27 740.36 720.69 784.11 165.24 191.86 250.3 249.18
AEA93751 (truB)
 69.29 60.62 51.62 19.41 28.87 83.22 39.23 30.7 33.25 34.43 42.13 41.95 36.79 35.32 14.18 26.8 31.61 6.54 6.34 3.8 39.08 71.12 75.0 85.63 70.72 54.11 68.23 30.27 101.76 17.64 27.72 38.85 38.77 62.03 48.43 54.91 72.93 44.77 84.17 103.24 18.01 23.18 20.14 15.13
AEA93765 (dnaK)
 5138.85 4755.69 4523.21 6024.64 4028.86 3279.52 248.28 247.14 1186.04 177.84 216.66 507.31 64.15 205.31 3872.71 943.24 333.61 371.36 314.33 332.0 7815.95 1803.95 4141.48 118.06 118.86 226.37 216.05 293.69 294.38 597.47 1832.96 631.98 325.73 218.45 944.87 292.54 272.45 152.45 149.62 175.53 806.3 394.27 1922.43 6433.84
AEA93877 (OG1RF_11190)
 225.07 211.94 182.68 120.11 167.9 434.61 124.34 113.49 265.6 125.22 159.2 114.17 129.76 117.81 167.21 162.94 17.54 5.83 16.0 14.14 150.41 377.5 475.56 278.11 225.54 247.73 166.04 140.06 133.7 90.76 75.13 60.58 177.79 185.17 284.99 177.49 183.33 278.88 345.86 353.3 205.43 152.61 207.59 191.51
AEA93881 (uvrC)
 655.44 715.98 634.28 266.05 212.63 847.6 31.77 35.53 41.0 43.48 47.63 38.87 52.05 32.14 95.28 34.69 24.43 18.07 15.44 25.24 951.79 91.2 112.75 92.35 58.73 55.9 50.06 47.78 69.7 55.79 48.96 81.8 73.94 52.16 89.1 39.7 49.41 127.39 130.4 145.58 32.28 18.84 52.28 93.51
AEA93928 (dnaG)
 972.08 609.23 503.5 220.15 465.95 1046.22 344.91 314.13 318.5 281.1 350.83 293.26 647.35 305.7 472.03 363.83 93.78 63.07 45.54 79.03 789.47 275.6 348.66 514.62 400.64 425.77 376.82 184.79 260.62 121.73 190.97 171.72 401.73 353.64 490.37 263.58 279.95 547.29 706.49 714.9 221.36 346.71 277.32 241.9
AEA93953 (cmk)
 309.0 519.95 488.79 15.7 372.1 563.32 128.25 129.09 223.46 173.84 206.83 122.07 201.21 112.79 134.57 147.56 77.27 19.86 15.61 15.64 56.33 326.54 457.53 176.8 456.37 234.86 254.99 203.73 238.72 211.77 135.04 238.86 371.14 191.78 273.87 266.29 196.15 176.74 338.38 378.91 100.24 140.57 233.1 105.98
AEA93977 (OG1RF_11290)
 552.07 273.21 314.26 168.93 312.25 260.11 11.93 39.07 60.11 40.61 38.99 12.92 89.84 11.86 80.02 163.46 118.95 86.78 51.09 58.9 524.98 226.48 314.61 335.87 398.18 356.7 186.51 102.53 77.79 184.71 249.4 59.33 84.88 67.62 74.74 81.74 104.62 294.13 348.53 343.88 93.71 67.91 126.03 111.51
AEA93980 (OG1RF_11293)
 196.48 165.98 143.96 134.39 120.28 195.14 93.49 87.9 133.23 84.02 112.92 92.4 110.73 92.84 128.75 55.13 42.61 29.6 18.04 37.56 110.77 145.42 163.86 103.35 92.72 81.18 98.62 68.55 98.58 41.43 59.68 106.97 139.13 91.56 127.85 87.29 94.23 95.35 121.17 131.77 110.14 70.12 89.16 82.84
AEA94010 (bglP2)
 125.39 119.34 91.84 7.83 64.4 200.48 20.97 17.11 20.54 31.72 41.36 24.32 59.34 22.11 12.48 33.89 4.3 1.77 6.16 5.89 12.08 34.74 53.3 63.88 62.95 16.87 15.84 17.38 48.9 22.53 19.77 43.4 23.19 28.31 20.19 25.18 23.08 57.73 97.79 95.77 25.13 29.92 29.73 16.09
AEA94095 (OG1RF_11408)
 193.09 203.54 202.39 13.9 132.36 292.53 50.06 56.24 47.47 42.29 43.78 45.28 43.68 43.32 29.62 50.14 16.35 11.18 8.76 14.87 27.6 27.0 29.92 72.22 81.63 65.4 63.32 23.0 60.26 43.84 24.06 39.01 56.09 41.96 39.99 37.96 41.46 144.58 161.15 105.28 35.6 27.53 36.94 24.09
AEA94125 (ebsa)
 60.52 92.09 110.47 19.18 72.99 124.4 32.51 38.45 84.46 31.81 45.38 52.08 51.0 51.85 16.23 43.75 14.22 6.88 5.26 8.49 56.54 61.64 107.26 58.4 49.79 50.15 35.48 32.61 54.38 57.45 17.01 24.55 69.6 55.13 50.1 49.05 53.76 55.89 66.0 67.32 32.67 29.25 50.74 48.55
AEA94128 (aroD)
 91.6 133.69 132.5 121.5 88.83 147.18 28.71 25.19 35.41 57.61 104.44 34.93 99.38 32.36 54.72 60.23 9.44 5.46 8.93 8.2 24.65 83.36 72.57 84.58 82.16 27.25 55.13 31.31 90.25 37.92 43.41 40.96 59.0 58.49 126.88 100.57 73.41 71.17 110.23 121.25 78.3 31.75 55.5 56.05
AEA94274 (OG1RF_11587)
 59.02 84.4 80.04 84.08 51.71 79.6 8.16 9.8 7.37 10.18 12.55 8.25 11.47 9.19 9.25 9.32 7.91 3.61 2.35 1.55 84.79 6.56 9.54 20.85 28.54 27.89 26.92 6.42 15.01 6.88 12.92 11.12 4.9 9.3 7.24 8.29 11.89 24.6 36.01 40.13 24.44 6.04 14.25 18.75
AEA94355 (topB)
 172.12 117.47 96.26 7.38 69.26 251.4 50.21 50.34 68.38 51.2 65.71 44.21 44.93 50.6 37.45 105.91 44.15 37.96 10.61 34.1 73.88 118.67 133.6 117.5 116.0 96.27 86.67 53.17 34.28 50.38 54.14 29.81 77.89 63.69 65.54 66.51 66.23 128.77 160.8 179.98 47.12 41.85 55.81 36.23
AEA94433 (OG1RF_11746)
 99.44 93.93 88.84 64.21 41.6 91.47 40.81 35.52 38.9 29.66 29.29 31.06 21.18 41.12 28.54 65.84 13.89 8.59 10.45 7.9 20.65 77.78 58.26 57.87 52.39 21.91 65.48 25.96 18.64 25.64 39.23 29.41 53.46 30.58 16.68 30.98 30.32 55.26 66.24 65.22 47.65 27.54 28.81 23.7
AEA94466 (OG1RF_11779)
 103.85 76.15 72.33 18.54 32.82 138.83 12.06 11.94 7.77 14.7 17.88 9.42 15.63 8.65 0.0 0.0 11.81 16.77 8.48 11.62 111.2 22.76 12.31 23.31 16.25 12.1 13.45 10.18 17.51 14.9 26.47 18.47 6.78 4.51 5.83 5.89 5.28 22.49 27.59 32.11 12.4 2.84 4.82 4.65
AEA94481 (OG1RF_11794)
 243.16 56.0 55.29 51.84 76.09 304.18 35.01 47.21 41.51 25.23 40.38 42.37 16.28 35.83 7.89 9.07 6.58 8.34 26.61 29.66 343.57 3.99 6.17 1.42 3.16 5.37 7.18 6.12 8.58 6.54 5.97 7.85 13.41 10.69 7.69 8.16 6.87 3.2 3.79 5.31 4.64 3.65 5.66 12.82
AEA94671 (OG1RF_11984)
 540.8 541.14 533.36 28.44 62.61 750.89 22.6 49.33 74.0 55.37 55.38 34.26 68.06 35.94 64.95 44.22 5.68 0.63 21.4 14.39 156.86 59.67 61.24 330.06 221.14 67.1 127.92 34.45 44.2 25.63 77.99 4.42 88.38 222.3 194.57 234.05 354.7 279.28 432.78 430.08 118.69 62.22 116.77 188.53
AEA94693 (groEL)
 2442.97 2262.45 2138.78 2835.32 1218.04 1521.96 72.91 67.59 211.96 76.31 41.1 144.11 40.33 58.95 2821.95 496.47 209.53 111.25 80.02 86.91 2436.24 884.74 1720.12 88.62 92.96 286.13 204.74 256.01 393.21 366.8 1397.39 913.52 230.03 91.63 516.33 253.2 191.38 128.06 133.27 194.61 534.85 174.59 534.05 1436.62
AEA94694 (groES)
 3033.7 1492.68 1132.83 4983.49 1072.52 1868.79 26.46 23.1 117.75 18.01 11.53 70.67 22.58 28.05 2475.85 331.39 326.15 83.69 69.77 48.7 5979.57 715.73 1457.68 131.25 144.45 300.46 288.38 500.95 254.47 566.51 1969.72 427.46 232.36 115.35 867.54 382.66 295.29 134.69 184.47 345.14 816.84 374.76 758.82 2208.39
AEA94780 (secE)
 448.36 518.35 578.84 147.36 173.04 766.09 599.52 245.38 306.76 522.83 306.11 730.36 394.99 595.92 107.7 238.32 12.97 2.7 32.77 19.57 1133.49 38.15 64.6 180.71 141.92 157.88 186.0 41.49 0.0 48.64 97.88 0.0 680.96 441.04 253.45 286.82 306.43 321.0 308.89 411.48 271.54 167.41 304.14 302.47
AEA94804 (dinB)
 1022.17 1060.07 1114.42 608.37 484.86 823.79 26.03 27.64 24.59 31.84 41.38 30.47 53.76 85.66 349.97 61.09 11.74 9.84 28.23 22.22 1795.82 120.56 153.56 56.67 49.58 29.29 20.02 23.36 56.94 36.65 32.44 39.72 67.31 39.46 76.25 29.7 26.45 157.36 173.97 200.67 665.64 35.38 141.54 439.76
AEA94848 (vanYB)
 100.48 85.15 83.89 1.64 83.56 137.38 17.05 15.19 53.47 11.37 17.62 13.56 11.53 16.95 0.0 0.0 0.0 0.0 2.93 3.45 10.07 52.01 51.21 29.32 77.36 68.42 47.7 15.53 10.08 20.32 12.05 8.3 36.42 18.12 20.26 16.41 15.56 33.24 65.17 93.09 0.0 0.0 0.0 0.0
AEA94849 (vanS)
 73.7 54.3 52.92 3.99 61.21 97.28 12.28 14.47 59.17 12.47 16.56 13.93 12.47 12.98 0.0 0.0 0.0 0.0 2.46 2.39 8.99 20.97 22.64 16.23 44.97 41.88 28.98 10.28 5.58 17.86 9.74 4.49 28.74 12.54 12.41 12.72 13.49 18.83 38.14 49.44 0.0 0.0 0.0 0.0
AEA94850 (vanR)
 66.85 28.05 29.07 3.88 44.98 65.07 14.44 8.84 37.69 8.15 10.64 6.1 9.54 8.75 0.0 0.0 0.0 0.0 1.94 3.14 6.3 35.08 45.59 23.36 52.33 31.79 35.7 10.12 4.34 20.02 9.61 4.63 25.01 13.97 14.39 12.84 12.78 15.83 44.77 68.03 0.0 0.0 0.0 0.0
AEA95009 (OG1RF_12322)
 135.72 137.62 131.45 16.49 56.46 144.5 45.0 42.39 33.77 37.34 44.06 46.73 45.49 48.41 17.72 18.4 10.96 2.28 5.34 4.66 26.25 20.74 28.98 57.46 73.39 21.09 65.11 15.48 34.98 19.61 18.57 22.23 35.23 52.07 45.87 51.8 55.18 51.56 99.41 114.29 47.2 15.85 24.57 37.23
AEA95129 (OG1RF_12442)
 1024.16 1226.05 1062.07 50.07 69.99 1737.47 13.64 6.32 16.66 11.54 15.2 8.95 10.89 9.45 67.33 21.44 15.42 11.11 14.58 12.7 2298.89 25.18 31.06 19.77 27.08 19.07 18.95 18.4 26.4 21.57 26.5 43.53 25.81 16.06 47.59 44.72 23.9 26.17 24.82 25.94 25.95 13.55 29.51 37.04
AEA95160 (OG1RF_12473)
 99.05 232.74 235.6 6.19 174.64 204.86 54.21 46.05 55.34 63.83 122.68 46.63 77.85 45.41 22.2 68.23 11.61 8.0 16.99 11.93 31.43 141.64 158.23 148.75 176.55 61.66 109.43 57.78 200.16 57.37 55.75 121.75 50.03 99.86 70.73 104.05 101.03 116.94 253.8 282.24 37.66 21.49 20.34 13.17
AEA95188 (OG1RF_12501)
 3930.76 6255.02 5254.89 473.7 884.93 5111.44 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 104.91 160.72 76.86 58.66 785.55 599.23 229.44 601.17 934.62 1293.26 521.21 532.76 485.72 187.46 0.0 132.92 28.04 0.0 33.01 309.08 635.88 326.48 243.1 2768.91 3204.0 3107.48 1325.1 614.75 701.38 1029.76

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)