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Gene | 55488,Cefotaxime | AH1263,WT,TSB | ATCC25923,DMSO | ATCC29213,Biofilm | ATCC6538,1/4MIC BITC | HG001,WT,L-exponential | IPLA1,NaPi | IPLA1,NaPi + LysH5 | IPLA1,phage phiIPLA-RODI | MRSA BD02-25,WT | NCTC8325,RSH | NCTC8325,RSH,Mup | NCTC8325,WT | NCTC8325,WT,E-Log | NCTC8325,WT,Mup | Newman,Exponential | Newman,TSB | Newman,TSB + 1 mM MnCl2 | Newman,WT | Newman,WT,Angeli's salt,Exponential | Newman,WT,Calprotectin,Exponential | Newman,WT,Exponential | Newman,WT,Na2S,Exponential | NRS384,WT | NRS384-rpoB-H481N-SCV | RN4220,WT,E-Log | RPMI + 10%LB,Exponential | TSB,Exponential | TSB,L-exponential | TSB,Stationary | UAMS1,WT | USA100,WT,CA-MHB | USA100,WT,CA-MHB,0.5ug/mL Naf | USA100,WT,CA-MHB,0ug/mL Naf | USA100,WT,CA-MHB,15ug/mL Naf | USA100,WT,CA-MHB,20ug/mL Naf | USA100,WT,RPMI + 10%LB | USA100,WT,RPMI + 10%LB,0.25ug/mL Naf | USA100,WT,RPMI + 10%LB,0.5ug/mL Naf | USA100,WT,RPMI + 10%LB,0ug/mL Naf | USA300 LAC,CA-MHB | USA300 LAC,CA-MHB,0.38 ug/mL Naf | USA300 LAC,RPMI + 10%LB | USA300 MRSA,dpurR | USA300 MRSA,WT | USA300 P23,Exponential | USA300 P23,Floxuridine,Exponential | USA300 P23,streptozotocin,Exponential | USA300 P23,WT,Exponential | USA300,0.0625ug/mL Naf | USA300,0.063 ug/mL Naf | USA300,0.1ug/mL Naf | USA300,0.5ug/mL Naf | USA300,0ug/mL Naf | USA300,1.0 ug/mLNaf | USA300,1.0ug/mL Naf | USA300,15ug/mL Naf | USA300,CA-MHB | USA300,CA-MHB,0.45ug/mL Van | USA300,CA-MHB,0.65ug/mL Van | USA300,CA-MHB,0.7ug/mL Van | USA300,CA-MHB,0.8ug/mL Van | USA300,CA-MHB,0ug/mL Van | USA300,delta agr::tet,DMSO | USA300,delta-mgrA::tet | USA300,DMSO | USA300,Exponential | USA300,RPMI + 10%LB | USA300,RPMI + 10%LB,0.031 ug/mL Naf | USA300,RPMI + 10%LB,0.063 ug/mL Naf | USA300,RPMI + 10%LB,0.1ug/mL Naf | USA300,RPMI + 10%LB,0.375ug/mL Van | USA300,RPMI + 10%LB,0.45ug/mL Van | USA300,RPMI + 10%LB,0.6ug/mL Van | USA300,RPMI + 10%LB,0.8ug/mL Van | USA300,RPMI + 10%LB,0ug/mL Naf | USA300,RPMI + 10%LB,0ug/mL Van | USA300,RPMI + 10%LB,15ug/mL Naf | USA300,Stationary | USA300,WT | USA300,WT,10 uM Linoleic Acid | USA300,WT,Apicidin | USA300,WT,DMSO | USA300,WT,Log | USA300,WT,RPMI + 10%LB | WT,Exponential | WT,L-exponential | WT,Mid-Log | WT,TSB,Exponential | WT,TSB,L-exponential | WT,TSB,Stationary | XN108,ccpA gene knock out |
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CPC91484 (nupC_2) | 6.49 | 3.51 | 2.11 | 3.26 | 189.53 | 11.42 | 1.43 | 1.2 | 0.68 | 2.28 | 2.77 | 4.42 | 3.19 | 3.34 | 2.08 | 4.29 | 2.98 | 3.0 | 6.45 | 5.23 | 3.35 | 6.76 | 4.94 | 2.85 | 3.17 | 2.76 | 2.56 | 2.65 | 1.87 | 2.29 | 2.85 | 2.9 | 3.75 | 3.52 | 3.54 | 3.54 | 2.28 | 2.25 | 2.44 | 2.39 | 9.75 | 9.69 | 2.11 | 7.04 | 4.23 | 8.94 | 9.58 | 6.11 | 6.15 | 14.66 | 14.18 | 2.38 | 7.18 | 6.66 | 10.13 | 6.65 | 5.64 | 2.94 | 10.66 | 3.63 | 2.79 | 2.49 | 6.88 | 47.25 | 2.95 | 1.77 | 5.92 | 2.39 | 2.21 | 2.32 | 3.27 | 1.62 | 2.53 | 2.24 | 3.23 | 2.72 | 2.83 | 3.0 | 7.41 | 5.25 | 7.89 | 5.46 | 5.77 | 2.09 | 3.96 | 15.6 | 25.76 | 1.19 | 2.73 | 1.78 | 2.49 | 167.95 |
CPC91520 (psuG) | 4.15 | 2.42 | 1.48 | 3.15 | 170.04 | 12.19 | 1.58 | 1.25 | 2.42 | 1.73 | 2.35 | 4.95 | 3.38 | 1.84 | 2.64 | 4.41 | 3.49 | 3.55 | 12.57 | 8.93 | 2.54 | 6.02 | 5.4 | 1.62 | 1.96 | 3.12 | 2.04 | 1.22 | 1.37 | 1.4 | 1.74 | 1.77 | 1.95 | 2.11 | 2.2 | 2.1 | 1.32 | 1.18 | 1.5 | 1.45 | 8.72 | 7.53 | 1.39 | 4.75 | 3.01 | 10.86 | 9.79 | 4.97 | 10.99 | 11.5 | 9.83 | 1.53 | 6.35 | 5.62 | 10.94 | 7.59 | 4.74 | 1.81 | 9.56 | 2.11 | 1.89 | 1.44 | 3.38 | 51.54 | 1.61 | 2.98 | 9.01 | 1.09 | 1.0 | 1.02 | 1.34 | 1.29 | 1.37 | 1.27 | 0.69 | 1.3 | 1.25 | 1.28 | 11.04 | 6.31 | 10.5 | 4.64 | 4.62 | 1.87 | 3.13 | 20.85 | 24.58 | 1.66 | 2.53 | 1.17 | 1.53 | 188.61 |
CPC91555 (psuK) | 1.27 | 1.6 | 0.44 | 1.74 | 124.16 | 7.64 | 0.79 | 1.1 | 0.69 | 2.06 | 1.01 | 2.81 | 1.31 | 1.09 | 1.15 | 5.66 | 2.55 | 1.78 | 10.89 | 5.4 | 1.5 | 3.84 | 4.91 | 0.74 | 0.89 | 1.61 | 0.69 | 0.92 | 0.99 | 0.92 | 1.31 | 1.12 | 1.35 | 1.54 | 1.64 | 1.36 | 1.02 | 0.92 | 1.23 | 1.03 | 8.21 | 7.02 | 0.98 | 3.16 | 2.5 | 11.75 | 6.11 | 4.49 | 14.13 | 11.31 | 10.59 | 0.92 | 5.62 | 5.13 | 9.35 | 6.62 | 4.21 | 1.36 | 9.28 | 1.39 | 1.14 | 0.68 | 3.11 | 31.17 | 0.76 | 1.83 | 7.82 | 0.72 | 0.66 | 0.65 | 1.15 | 0.6 | 0.79 | 0.88 | 0.94 | 0.57 | 1.01 | 1.27 | 11.42 | 4.41 | 9.39 | 2.96 | 2.5 | 1.42 | 2.23 | 15.51 | 8.49 | 1.85 | 1.1 | 0.77 | 1.08 | 172.82 |
CPC93138 (rbsU) | 32.27 | 65.19 | 55.31 | 10.03 | 261.96 | 45.47 | 10.89 | 3.14 | 15.79 | 9.06 | 19.92 | 19.09 | 11.71 | 17.72 | 13.99 | 18.71 | 40.23 | 40.43 | 28.87 | 23.05 | 27.79 | 19.62 | 23.36 | 70.7 | 31.88 | 23.46 | 23.78 | 16.2 | 20.19 | 27.23 | 6.57 | 24.16 | 29.7 | 38.99 | 42.75 | 41.82 | 12.43 | 11.96 | 12.31 | 13.43 | 8.67 | 8.77 | 11.12 | 116.84 | 73.58 | 33.83 | 42.81 | 42.76 | 30.07 | 19.9 | 22.75 | 13.62 | 15.47 | 16.12 | 22.86 | 18.69 | 15.43 | 26.33 | 21.9 | 22.62 | 27.3 | 12.36 | 14.42 | 40.16 | 28.33 | 17.89 | 17.46 | 23.69 | 19.78 | 17.9 | 14.46 | 12.33 | 12.21 | 7.76 | 9.92 | 14.03 | 9.54 | 16.29 | 16.25 | 49.6 | 55.18 | 61.51 | 64.02 | 37.65 | 15.38 | 34.73 | 9.01 | 25.11 | 19.84 | 17.46 | 19.79 | 379.23 |
CPC93182 (rbsD) | 37.72 | 115.94 | 63.89 | 20.2 | 288.03 | 63.59 | 24.58 | 9.56 | 36.31 | 34.72 | 34.65 | 32.62 | 19.71 | 28.72 | 22.89 | 50.32 | 103.93 | 95.79 | 47.51 | 64.89 | 83.45 | 66.19 | 74.49 | 124.45 | 56.71 | 35.98 | 55.15 | 13.33 | 26.43 | 33.15 | 3.68 | 44.49 | 58.89 | 76.69 | 83.7 | 79.91 | 29.79 | 27.69 | 28.21 | 30.24 | 18.49 | 17.54 | 20.8 | 122.66 | 68.41 | 50.85 | 61.9 | 55.34 | 48.75 | 42.86 | 45.02 | 32.41 | 33.96 | 36.12 | 49.85 | 45.85 | 34.24 | 39.24 | 48.4 | 30.9 | 42.91 | 20.01 | 24.14 | 65.64 | 40.33 | 63.7 | 59.51 | 41.71 | 38.63 | 35.86 | 33.78 | 25.65 | 19.6 | 16.96 | 20.84 | 34.35 | 15.82 | 37.56 | 41.6 | 47.75 | 33.73 | 85.55 | 94.62 | 40.03 | 22.54 | 56.22 | 54.26 | 192.01 | 33.32 | 22.23 | 28.46 | 396.32 |
CPC93250 (rbsK) | 42.02 | 75.63 | 75.46 | 17.83 | 230.44 | 90.27 | 19.25 | 7.61 | 26.97 | 33.19 | 28.1 | 18.03 | 17.82 | 26.71 | 20.59 | 40.35 | 123.38 | 120.75 | 59.72 | 66.73 | 62.87 | 45.57 | 58.6 | 93.14 | 44.05 | 29.68 | 49.97 | 24.69 | 21.76 | 34.9 | 8.92 | 36.75 | 49.12 | 61.88 | 66.16 | 62.25 | 24.09 | 21.79 | 23.19 | 22.8 | 12.31 | 12.1 | 17.67 | 98.51 | 57.0 | 42.49 | 42.61 | 47.42 | 58.01 | 33.03 | 32.47 | 23.73 | 23.39 | 24.95 | 29.39 | 25.09 | 22.69 | 34.48 | 33.28 | 29.18 | 35.22 | 16.9 | 21.0 | 53.81 | 31.49 | 31.71 | 53.92 | 34.6 | 30.7 | 25.56 | 27.54 | 16.38 | 19.79 | 13.82 | 16.07 | 28.15 | 12.72 | 29.02 | 44.74 | 39.05 | 43.71 | 70.76 | 72.86 | 28.95 | 16.71 | 58.2 | 76.2 | 135.58 | 31.39 | 21.33 | 28.4 | 371.98 |
Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)