Heatmap: Cluster_43 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	55488,Cefotaxime	AH1263,WT,TSB	ATCC25923,DMSO	ATCC29213,Biofilm	ATCC6538,1/4MIC BITC	HG001,WT,L-exponential	IPLA1,NaPi	IPLA1,NaPi + LysH5	IPLA1,phage phiIPLA-RODI	MRSA BD02-25,WT	NCTC8325,RSH	NCTC8325,RSH,Mup	NCTC8325,WT	NCTC8325,WT,E-Log	NCTC8325,WT,Mup	Newman,Exponential	Newman,TSB	Newman,TSB + 1 mM MnCl2	Newman,WT	Newman,WT,Angeli's salt,Exponential	Newman,WT,Calprotectin,Exponential	Newman,WT,Exponential	Newman,WT,Na2S,Exponential	NRS384,WT	NRS384-rpoB-H481N-SCV	RN4220,WT,E-Log	RPMI + 10%LB,Exponential	TSB,Exponential	TSB,L-exponential	TSB,Stationary	UAMS1,WT	USA100,WT,CA-MHB	USA100,WT,CA-MHB,0.5ug/mL Naf	USA100,WT,CA-MHB,0ug/mL Naf	USA100,WT,CA-MHB,15ug/mL Naf	USA100,WT,CA-MHB,20ug/mL Naf	USA100,WT,RPMI + 10%LB	USA100,WT,RPMI + 10%LB,0.25ug/mL Naf	USA100,WT,RPMI + 10%LB,0.5ug/mL Naf	USA100,WT,RPMI + 10%LB,0ug/mL Naf	USA300 LAC,CA-MHB	USA300 LAC,CA-MHB,0.38 ug/mL Naf	USA300 LAC,RPMI + 10%LB	USA300 MRSA,dpurR	USA300 MRSA,WT	USA300 P23,Exponential	USA300 P23,Floxuridine,Exponential	USA300 P23,streptozotocin,Exponential	USA300 P23,WT,Exponential	USA300,0.0625ug/mL Naf	USA300,0.063 ug/mL Naf	USA300,0.1ug/mL Naf	USA300,0.5ug/mL Naf	USA300,0ug/mL Naf	USA300,1.0 ug/mLNaf	USA300,1.0ug/mL Naf	USA300,15ug/mL Naf	USA300,CA-MHB	USA300,CA-MHB,0.45ug/mL Van	USA300,CA-MHB,0.65ug/mL Van	USA300,CA-MHB,0.7ug/mL Van	USA300,CA-MHB,0.8ug/mL Van	USA300,CA-MHB,0ug/mL Van	USA300,delta agr::tet,DMSO	USA300,delta-mgrA::tet	USA300,DMSO	USA300,Exponential	USA300,RPMI + 10%LB	USA300,RPMI + 10%LB,0.031 ug/mL Naf	USA300,RPMI + 10%LB,0.063 ug/mL Naf	USA300,RPMI + 10%LB,0.1ug/mL Naf	USA300,RPMI + 10%LB,0.375ug/mL Van	USA300,RPMI + 10%LB,0.45ug/mL Van	USA300,RPMI + 10%LB,0.6ug/mL Van	USA300,RPMI + 10%LB,0.8ug/mL Van	USA300,RPMI + 10%LB,0ug/mL Naf	USA300,RPMI + 10%LB,0ug/mL Van	USA300,RPMI + 10%LB,15ug/mL Naf	USA300,Stationary	USA300,WT	USA300,WT,10 uM Linoleic Acid	USA300,WT,Apicidin	USA300,WT,DMSO	USA300,WT,Log	USA300,WT,RPMI + 10%LB	WT,Exponential	WT,L-exponential	WT,Mid-Log	WT,TSB,Exponential	WT,TSB,L-exponential	WT,TSB,Stationary	XN108,ccpA gene knock out
CPD39303 (ERS093114_02758)	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	6.52	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
CPD39338 (ermC)	-	-	-	-	-	5.06	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4.7	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5.04	-	-	-	-	-

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.