Heatmap: Cluster_35 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log₂ transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene	55488,Cefotaxime	AH1263,WT,TSB	ATCC25923,DMSO	ATCC29213,Biofilm	ATCC6538,1/4MIC BITC	HG001,WT,L-exponential	IPLA1,NaPi	IPLA1,NaPi + LysH5	IPLA1,phage phiIPLA-RODI	MRSA BD02-25,WT	NCTC8325,RSH	NCTC8325,RSH,Mup	NCTC8325,WT	NCTC8325,WT,E-Log	NCTC8325,WT,Mup	Newman,Exponential	Newman,TSB	Newman,TSB + 1 mM MnCl2	Newman,WT	Newman,WT,Angeli's salt,Exponential	Newman,WT,Calprotectin,Exponential	Newman,WT,Exponential	Newman,WT,Na2S,Exponential	NRS384,WT	NRS384-rpoB-H481N-SCV	RN4220,WT,E-Log	RPMI + 10%LB,Exponential	TSB,Exponential	TSB,L-exponential	TSB,Stationary	UAMS1,WT	USA100,WT,CA-MHB	USA100,WT,CA-MHB,0.5ug/mL Naf	USA100,WT,CA-MHB,0ug/mL Naf	USA100,WT,CA-MHB,15ug/mL Naf	USA100,WT,CA-MHB,20ug/mL Naf	USA100,WT,RPMI + 10%LB	USA100,WT,RPMI + 10%LB,0.25ug/mL Naf	USA100,WT,RPMI + 10%LB,0.5ug/mL Naf	USA100,WT,RPMI + 10%LB,0ug/mL Naf	USA300 LAC,CA-MHB	USA300 LAC,CA-MHB,0.38 ug/mL Naf	USA300 LAC,RPMI + 10%LB	USA300 MRSA,dpurR	USA300 MRSA,WT	USA300 P23,Exponential	USA300 P23,Floxuridine,Exponential	USA300 P23,streptozotocin,Exponential	USA300 P23,WT,Exponential	USA300,0.0625ug/mL Naf	USA300,0.063 ug/mL Naf	USA300,0.1ug/mL Naf	USA300,0.5ug/mL Naf	USA300,0ug/mL Naf	USA300,1.0 ug/mLNaf	USA300,1.0ug/mL Naf	USA300,15ug/mL Naf	USA300,CA-MHB	USA300,CA-MHB,0.45ug/mL Van	USA300,CA-MHB,0.65ug/mL Van	USA300,CA-MHB,0.7ug/mL Van	USA300,CA-MHB,0.8ug/mL Van	USA300,CA-MHB,0ug/mL Van	USA300,delta agr::tet,DMSO	USA300,delta-mgrA::tet	USA300,DMSO	USA300,Exponential	USA300,RPMI + 10%LB	USA300,RPMI + 10%LB,0.031 ug/mL Naf	USA300,RPMI + 10%LB,0.063 ug/mL Naf	USA300,RPMI + 10%LB,0.1ug/mL Naf	USA300,RPMI + 10%LB,0.375ug/mL Van	USA300,RPMI + 10%LB,0.45ug/mL Van	USA300,RPMI + 10%LB,0.6ug/mL Van	USA300,RPMI + 10%LB,0.8ug/mL Van	USA300,RPMI + 10%LB,0ug/mL Naf	USA300,RPMI + 10%LB,0ug/mL Van	USA300,RPMI + 10%LB,15ug/mL Naf	USA300,Stationary	USA300,WT	USA300,WT,10 uM Linoleic Acid	USA300,WT,Apicidin	USA300,WT,DMSO	USA300,WT,Log	USA300,WT,RPMI + 10%LB	WT,Exponential	WT,L-exponential	WT,Mid-Log	WT,TSB,Exponential	WT,TSB,L-exponential	WT,TSB,Stationary	XN108,ccpA gene knock out
CPD33702 (mccB)	-0.5	-2.66	2.15	0.79	-4.61	-1.95	2.94	2.66	-1.85	-3.05	1.69	1.51	2.43	-1.86	2.26	-0.39	-0.8	-0.82	0.17	-1.88	-2.7	-1.48	-3.51	-3.47	-3.52	0.16	-1.13	1.07	0.88	-0.55	-0.49	0.78	0.7	0.64	0.24	0.18	-2.25	-2.14	-2.22	-2.25	-0.49	-0.74	-3.38	-2.29	-3.14	-1.98	1.61	-0.99	-1.09	-0.33	-0.93	-2.71	0.34	0.66	0.59	0.73	0.27	0.92	-0.64	-0.68	-0.78	-2.83	-0.76	-2.68	-0.52	1.45	-1.7	-2.91	-2.56	-2.54	-2.54	-3.73	-4.0	-2.99	-2.88	-2.53	-3.29	-2.51	-2.65	-1.76	-1.22	-4.09	-3.25	0.79	-0.24	-1.96	-2.05	-0.58	1.0	0.93	-0.18	-0.86
CPD33740 (mccA)	-0.78	-2.07	1.53	0.54	-6.04	-1.97	3.01	2.62	-1.62	-3.5	1.68	1.88	2.75	-1.95	1.56	-0.19	-0.65	-0.78	0.72	-1.62	-2.46	-1.62	-3.45	-4.09	-3.75	0.2	-1.01	1.31	0.97	-0.33	-0.24	0.74	0.65	0.56	0.23	0.2	-2.38	-2.38	-2.37	-2.43	-1.8	-2.02	-3.81	-3.22	-3.45	-1.28	1.99	-1.3	-1.02	-0.29	-1.0	-2.59	0.4	0.61	0.8	0.77	0.27	0.27	-0.6	-0.67	-0.71	-3.43	-0.94	-3.52	-0.63	1.7	-1.25	-2.95	-2.91	-2.56	-2.31	-3.35	-4.0	-3.21	-3.71	-2.54	-3.33	-2.26	-1.9	-1.04	-2.47	-4.54	-3.99	0.16	-0.87	-1.85	-2.26	-0.71	1.45	1.21	0.07	-1.9

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.