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Heatmap: Cluster_14 (HCCA)

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(Showing raw values)

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Gene
25RC,0.25% glucose
3RC,0.25% glucose
58RC,0.25% glucose
ATCC 29212,0% glucose
ATCC 29212,0.15% glucose
ATCC 29212,0.25% glucose
ATCC 29212,15min
ATCC 29212,ampicillin,15min
ATCC 29212,bacitracin,15min
ATCC 29212,chloramphenicol,15min
ATCC 29212,erythromycin,15min
ATCC 29212,kanamycin,15min
ATCC 29212,lincomycin,15min
ATCC 29212,ofloxacin,15min
ATCC 33186,TSB
ATCC 33186,pH10
EF16C185,37C,4h,20mlMH
EF16C185-O2,37C,4h,20mlMH
F4,37C,4h,20mlMH
F4-11,37C,4h,20mlMH
OG1RF
OG1RF,(p)ppGpp0
OG1RF,(p)ppGpp0 codY-KO
OG1RF,Untreated,0min
OG1RF,Untreated,10min
OG1RF,Untreated,20min
OG1RF,Untreated,40min
OG1RF,WT
OG1RF,cellobiose
OG1RF,clpP-KO
OG1RF,gentiobiose
OG1RF,glucose
OG1RF,pCF10
OG1RF,pCIE
OG1RF,pDAK1010A,highFstpAD1
OG1RF,pDAK1010E,highFstEF0409
OG1RF,pDAK1010E,lowFstEF0409
OG1RF,phageVPE25,0min
OG1RF,phageVPE25,10min
OG1RF,phageVPE25,20min
V649,LVX
V649,Untreated
V649,pGR-IS256
V649,pGR-tetM
AEA92698 (rplI)
 368.53 352.54 322.51 339.93 407.71 282.88 241.15 286.86 312.26 231.45 316.53 247.93 279.51 263.27 426.4 332.75 237.48 364.17 414.78 388.44 109.21 482.84 494.93 187.61 193.46 90.65 171.56 213.03 246.31 286.54 776.36 333.55 393.09 175.12 432.7 300.21 209.92 148.11 157.15 138.72 365.05 197.94 204.01 140.91
AEA92719 (OG1RF_10032)
 0.0 0.0 0.0 0.0 0.0 19.89 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 3.35 3.57 0.0 13.43 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.9 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0
AEA92785 (argR)
 846.36 813.03 722.44 315.06 778.18 1648.57 402.83 417.37 470.93 400.85 431.05 406.11 605.35 474.29 232.12 949.36 36.18 41.21 48.87 85.55 36.28 96.08 22.64 107.1 93.51 38.13 37.15 26.57 367.06 43.97 42.8 74.16 296.26 28.37 49.65 23.01 19.1 109.21 125.32 104.44 667.77 171.65 36.37 62.87
AEA93061 (OG1RF_10374)
 36.4 36.79 37.41 15.38 28.43 58.2 4.35 11.86 4.1 5.92 11.54 7.06 4.91 9.72 34.35 7.44 17.21 10.54 8.14 16.6 20.98 12.83 13.86 17.53 20.68 20.05 17.21 12.42 13.9 21.71 38.95 16.36 27.0 10.09 9.25 12.04 8.94 13.81 17.02 15.85 16.07 7.52 9.47 7.35
AEA93062 (OG1RF_10375)
 116.64 136.29 145.56 30.4 55.62 94.94 10.92 14.68 10.58 10.3 17.16 10.92 12.02 8.35 34.62 22.2 29.16 38.17 12.03 22.89 37.2 33.15 34.84 18.2 28.56 32.37 27.69 27.22 23.43 39.54 65.59 34.61 25.14 14.46 11.09 12.61 12.65 20.49 25.67 26.74 30.76 10.76 11.82 12.33
AEA93083 (OG1RF_10396)
 24224.7 4769.15 5289.4 6363.83 2907.91 3288.7 89.11 136.16 157.12 12.13 218.38 115.79 187.86 106.28 9749.63 244.14 547.38 1764.84 15000.07 2153.0 4211.7 164.99 198.21 403.42 492.55 754.45 308.68 87.4 0.0 90.86 2273.3 0.0 1641.7 262.04 1240.38 640.44 205.18 124.76 263.82 420.85 1141.5 211.89 1617.93 3364.22
AEA93090 (OG1RF_10403)
 131.01 59.91 56.27 83.59 290.0 213.93 9.66 15.82 18.25 23.01 31.57 36.62 36.37 14.4 87.93 14.18 81.75 164.62 38.55 20.33 25.23 44.03 31.35 17.12 7.91 18.41 3.06 30.05 37.9 34.59 33.62 83.14 131.47 59.57 69.64 72.1 61.68 25.04 13.94 12.5 73.12 64.29 48.17 36.42
AEA93119 (OG1RF_10432)
 69.78 68.9 64.11 5.03 90.37 119.67 1.45 1.27 1.83 1.38 2.73 2.36 3.5 1.44 83.26 37.25 4.51 100.27 70.42 168.56 20.65 12.83 6.5 7.07 1.22 0.67 1.5 2.8 61.65 4.73 302.32 49.65 2.23 0.79 0.78 1.26 0.96 4.12 4.48 6.51 10.77 3.69 6.65 8.58
AEA93120 (OG1RF_10433)
 110.23 90.8 104.99 6.39 130.34 182.89 2.71 0.74 6.83 1.84 3.32 2.93 2.55 0.0 123.96 70.26 9.26 305.61 98.82 341.41 30.23 16.81 3.31 11.07 1.94 1.63 3.58 2.78 83.0 5.02 559.18 69.89 2.15 1.07 0.86 1.93 0.72 6.33 4.74 5.54 14.6 5.71 7.73 11.21
AEA93121 (lacD1)
 79.18 102.11 97.53 5.76 146.1 187.2 0.69 1.5 2.3 2.65 6.35 2.72 2.58 2.5 118.76 61.32 8.48 404.2 198.96 517.65 26.94 18.49 4.87 8.15 3.32 1.47 2.61 1.96 65.52 4.6 546.72 69.23 1.98 0.46 1.53 2.29 2.36 7.66 6.66 5.01 14.47 4.22 8.12 9.83
AEA93161 (OG1RF_10474)
 55.71 44.19 33.21 2.8 279.73 124.58 10.69 9.72 18.4 11.64 23.29 13.5 25.49 11.33 16.39 6.28 11.63 16.37 3.57 5.82 6.47 25.07 34.2 36.68 18.67 6.43 26.27 31.5 19.01 34.8 13.87 21.52 190.16 63.76 67.45 105.32 79.55 36.05 65.82 61.21 93.31 21.52 68.18 41.34
AEA93162 (OG1RF_10475)
 147.85 170.73 142.63 93.0 558.32 290.88 59.92 67.58 101.63 88.09 154.68 73.1 113.09 49.63 54.73 70.75 44.87 84.82 20.62 24.71 48.13 49.6 55.16 53.55 48.0 50.09 59.65 66.29 56.03 65.92 62.58 87.48 271.06 110.03 91.62 141.52 111.75 74.25 81.3 74.01 132.81 43.42 76.29 49.87
AEA93360 (OG1RF_10673)
 183.97 165.53 174.65 247.59 188.44 306.0 87.98 69.19 77.09 67.7 105.81 79.3 73.24 86.91 200.01 159.89 113.66 153.84 57.94 91.52 92.72 80.14 70.99 77.99 51.8 79.49 86.0 81.6 124.89 115.73 123.8 151.87 165.34 52.35 77.04 68.46 53.84 94.29 86.15 100.8 134.66 77.54 80.24 67.02
AEA93534 (OG1RF_10847)
 38.99 46.63 37.13 0.0 75.24 89.11 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 6.86 30.37 16.6 33.37 9.83 0.0 4.81 5.0 0.0 5.16 0.0 0.0 1.4 0.0 0.0 0.0 0.0 23.2 20.68 0.0 0.0 0.0 21.17 38.02 2.04 13.34 9.44
AEA93589 (OG1RF_10902)
 74.82 14.26 15.94 32.18 15.99 20.84 7.55 10.31 9.91 9.86 9.26 9.88 10.9 8.13 41.92 14.48 18.79 35.48 23.21 29.16 9.28 21.88 7.97 11.96 7.86 7.01 17.22 9.68 14.67 12.14 26.41 17.87 8.88 2.92 5.64 4.6 4.99 9.48 8.41 6.09 17.9 10.42 12.73 9.51
AEA93620 (OG1RF_10933)
 97.92 61.56 59.46 94.57 35.85 91.57 15.74 15.8 30.13 18.42 19.54 21.13 20.15 15.64 110.07 41.58 18.57 70.14 29.42 35.63 38.56 34.91 26.69 26.58 19.46 22.92 58.71 29.5 35.34 35.6 43.83 37.5 20.29 12.0 48.39 22.38 14.95 30.88 24.99 33.94 51.58 11.64 18.04 18.97
AEA93621 (OG1RF_10934)
 168.21 115.27 109.51 84.33 63.82 128.11 27.05 30.05 36.92 26.02 25.14 27.18 22.19 25.11 168.52 71.95 29.43 145.04 82.03 96.01 40.52 60.14 45.47 21.52 17.44 29.96 54.94 42.42 51.17 51.99 67.81 77.58 34.41 14.07 48.33 22.81 17.99 30.85 24.52 28.16 53.77 13.45 28.0 20.91
AEA93622 (ansB)
 37.65 15.87 13.15 1.86 9.08 15.24 3.78 3.35 1.49 2.73 4.63 3.07 2.31 1.64 4.3 3.93 1.91 19.61 9.7 11.14 5.25 9.54 3.19 1.9 1.84 0.9 10.52 3.43 3.59 6.73 7.95 3.73 0.59 0.95 2.67 1.36 1.32 2.03 3.39 5.37 4.05 0.86 2.68 3.36
AEA93623 (celA4)
 23.87 14.27 6.89 2.14 12.56 13.38 6.8 4.45 3.43 2.78 2.22 1.47 1.02 4.06 11.73 2.66 3.18 64.51 18.98 15.89 7.07 6.09 2.39 2.94 4.18 2.46 8.33 2.17 3.61 6.29 7.24 2.32 0.0 1.82 0.0 1.67 4.51 2.82 2.26 6.41 7.5 0.7 5.81 6.21
AEA93624 (celB2)
 18.67 12.71 11.07 1.45 10.43 17.91 4.16 5.21 4.27 5.87 4.78 7.17 4.52 5.51 4.57 10.25 3.0 36.85 22.89 16.76 6.15 7.59 3.12 3.39 3.97 2.97 11.64 2.66 5.37 3.43 11.67 6.55 1.98 1.56 2.61 3.22 2.99 5.23 7.6 9.14 6.27 1.83 8.99 8.88
AEA93625 (OG1RF_10938)
 25.07 7.5 7.96 4.12 4.03 15.62 0.0 2.86 0.0 0.0 0.0 0.0 0.0 0.0 5.02 10.25 2.36 67.2 42.92 20.29 19.64 33.18 5.42 0.52 0.54 0.0 1.11 3.4 3.48 1.66 14.1 9.15 0.0 2.98 4.11 4.23 1.5 1.35 4.36 1.12 11.56 2.21 16.13 16.89
AEA93626 (OG1RF_10939)
 8.98 33.99 17.1 2.95 11.55 22.38 11.25 22.51 14.17 15.32 18.38 10.15 5.65 20.5 21.56 9.18 8.88 257.12 168.66 70.92 7.08 8.14 1.65 0.0 0.77 0.75 5.94 3.95 5.66 4.19 18.78 6.8 1.55 1.26 4.1 4.62 3.07 3.9 4.59 6.43 5.81 1.47 15.97 12.47
AEA93826 (OG1RF_11139)
 76.44 43.93 47.59 62.93 44.39 95.81 10.7 11.68 9.96 15.83 20.52 14.1 18.56 13.41 36.99 26.4 16.79 12.44 11.57 20.16 5.46 4.62 3.78 13.46 5.71 2.71 3.73 7.42 33.97 14.58 20.25 22.19 6.01 6.34 19.03 15.86 9.49 7.97 11.68 18.21 42.13 16.6 29.5 30.55
AEA93933 (gap)
 4367.11 391.43 384.94 2070.14 523.49 345.85 83.37 87.4 114.13 91.84 117.94 81.25 91.52 89.41 6807.42 421.86 351.96 1062.98 4648.64 1331.28 1959.08 36.33 38.38 157.68 135.97 246.6 116.65 214.58 763.78 326.65 998.24 416.91 463.28 94.02 849.85 345.85 146.44 150.31 195.47 241.81 339.52 222.74 596.27 859.94
AEA94054 (panE)
 96.56 13.42 7.88 8.05 60.36 18.71 3.62 3.49 3.49 2.61 3.66 2.08 3.37 3.6 61.86 14.6 6.37 4.56 86.76 29.91 10.86 3.93 5.54 5.24 15.97 11.76 3.83 3.43 5.43 5.36 16.71 7.72 6.41 4.29 9.79 7.45 3.96 5.15 8.17 10.53 15.18 2.42 51.62 17.73
AEA94057 (bkdC)
 334.88 31.29 32.4 23.44 186.73 22.59 6.32 8.13 6.53 5.62 7.67 5.61 5.49 5.8 263.79 50.71 3.85 127.84 143.41 93.96 44.72 5.69 1.89 8.86 3.75 2.5 3.49 4.14 6.32 4.68 38.75 4.6 1.09 1.06 0.81 0.93 0.64 12.31 6.73 6.21 48.9 5.28 185.15 89.29
AEA94058 (bkdB)
 202.72 14.56 10.31 14.58 138.86 12.46 3.84 2.96 3.13 2.62 5.54 2.69 3.92 1.57 99.21 38.05 1.84 72.7 63.6 105.34 18.11 3.96 0.88 4.9 1.81 0.73 1.29 1.23 1.8 1.39 28.63 1.12 0.33 0.36 0.14 0.19 0.39 5.34 4.2 3.89 35.16 2.43 91.45 56.08
AEA94135 (OG1RF_11448)
 0.0 15.3 0.0 25.23 49.38 66.95 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 2.25 0.0 13.09 7.3 1.61 7.53 0.0 0.0 0.0 0.0 0.49 0.0 0.0 2.61 0.0 64.88 28.71 9.93 7.4 9.16 0.0 0.0 0.0 1.9 7.02 9.07 2.01
AEA94196 (OG1RF_11509)
 39.29 11.14 12.02 14.7 18.3 20.96 2.69 2.83 4.28 3.24 4.7 3.47 5.47 2.95 17.27 10.85 2.32 29.79 21.21 19.33 6.26 13.72 4.56 2.02 2.4 1.12 2.21 1.24 2.03 1.78 25.57 1.6 2.21 1.24 3.33 1.71 1.38 3.62 6.17 8.22 4.71 1.1 4.48 7.85
AEA94197 (OG1RF_11510)
 231.19 28.87 47.49 80.46 87.91 34.29 5.97 11.16 11.81 6.38 3.48 8.31 2.57 6.78 212.34 9.18 6.94 196.99 168.17 69.96 13.63 14.93 1.5 2.35 1.57 1.37 5.94 2.36 4.42 1.75 64.2 3.97 2.0 0.19 1.36 3.81 2.37 6.64 8.77 5.88 20.38 3.17 23.82 46.95
AEA94198 (OG1RF_11511)
 79.08 10.29 15.95 25.69 45.33 21.24 6.41 8.27 7.71 6.55 6.67 5.37 5.05 5.22 127.11 14.84 5.5 101.52 60.95 35.69 6.16 8.64 2.3 1.32 1.31 1.05 7.64 1.73 3.84 2.39 37.29 3.95 1.5 0.6 1.01 2.02 0.64 3.86 4.69 5.52 17.43 3.22 15.6 44.4
AEA94199 (OG1RF_11512)
 32.44 7.64 7.59 11.19 20.34 13.83 2.8 5.27 5.76 4.15 7.89 3.3 3.64 3.79 72.07 7.46 2.55 55.34 36.02 14.69 5.04 7.2 1.97 0.95 1.82 0.41 4.08 1.23 2.91 0.95 18.06 2.81 0.83 0.69 0.87 1.6 1.27 1.85 3.86 7.43 11.82 2.51 7.94 31.67
AEA94200 (levE)
 51.59 9.68 10.6 11.97 9.76 18.87 1.9 2.08 2.4 2.16 8.8 2.06 1.91 2.52 111.77 4.34 3.35 96.65 37.66 16.29 3.92 5.22 1.61 2.12 0.91 0.0 5.62 2.22 2.99 2.77 20.41 3.13 1.56 0.85 0.98 2.1 1.4 1.98 4.95 6.82 12.53 3.07 7.51 15.64
AEA94201 (bgaL2)
 40.45 6.05 6.14 11.62 17.14 10.3 2.76 2.41 2.64 1.95 4.23 2.75 2.32 2.63 40.14 6.04 2.03 23.08 23.14 12.61 8.97 7.2 5.35 1.06 1.67 2.1 4.73 1.4 2.33 1.5 9.23 2.46 1.26 0.72 1.28 0.99 0.5 2.69 4.54 9.52 11.94 3.44 7.62 10.91
AEA94202 (lacC)
 113.99 8.86 14.17 153.44 150.15 36.0 12.93 11.8 10.66 11.2 19.58 11.96 8.49 10.05 77.24 19.55 6.58 93.87 149.11 54.98 35.66 9.99 4.76 4.95 2.69 5.89 19.21 5.43 10.38 7.91 23.19 15.4 6.45 2.14 5.82 8.3 3.25 8.72 7.06 6.97 15.55 6.08 13.37 26.94
AEA94203 (lacD2)
 89.74 9.9 11.16 55.51 48.72 24.71 6.84 12.37 10.24 10.19 15.2 9.96 8.53 10.2 86.88 11.51 8.36 164.86 161.8 56.9 53.86 9.73 5.7 3.24 2.58 3.3 12.51 4.46 9.14 6.89 21.29 13.25 6.16 1.94 3.78 5.68 3.29 6.0 4.31 5.06 15.47 6.58 12.17 26.31
AEA94204 (agaS)
 46.4 4.36 7.13 26.18 23.37 19.48 5.67 3.99 7.6 4.48 7.02 3.96 4.82 6.73 59.06 7.7 6.76 102.98 56.09 34.3 64.3 9.37 5.28 2.66 2.47 2.64 9.04 4.66 4.39 7.36 11.12 7.08 4.83 1.5 4.03 5.07 2.39 3.7 2.72 4.24 11.72 7.13 8.95 14.07
AEA94461 (OG1RF_11774)
 111.43 58.83 57.2 29.61 73.96 151.11 9.41 8.29 10.81 4.72 9.04 5.9 4.1 4.27 0.0 0.0 8.48 29.18 74.39 102.19 5.73 40.79 1.45 1.69 0.98 0.46 2.09 1.22 1.0 1.6 22.81 0.9 0.33 0.52 0.36 0.38 0.28 2.14 2.58 2.7 51.12 1.05 22.43 11.93
AEA94462 (OG1RF_11775)
 46.37 25.21 25.33 22.27 45.9 87.35 6.23 7.21 6.66 3.08 7.09 7.15 3.98 4.69 0.0 0.0 5.13 6.92 8.74 27.05 6.62 35.08 1.92 2.67 1.31 1.14 1.32 2.04 3.05 2.64 10.67 1.73 0.82 0.51 0.89 0.8 0.73 2.74 4.03 7.95 43.57 3.04 12.48 9.25
AEA94463 (OG1RF_11776)
 44.21 22.72 20.97 27.83 40.94 83.5 4.56 5.47 6.31 3.18 4.91 3.37 3.44 3.1 0.0 0.0 3.36 4.93 10.26 17.02 20.68 22.86 2.0 2.3 1.46 0.6 1.25 2.99 1.69 6.98 8.25 2.19 0.5 0.38 0.53 0.82 1.06 2.6 2.93 4.21 47.39 4.38 13.07 9.76
AEA95002 (OG1RF_12315)
 116.55 52.27 32.37 71.82 84.34 131.21 9.13 0.0 0.0 6.22 14.92 0.0 0.0 0.0 0.0 0.0 3.61 10.47 23.68 15.14 0.0 7.06 5.15 8.99 11.22 3.66 5.79 5.5 4.41 8.58 14.7 5.54 10.03 4.14 17.52 7.03 9.75 2.38 18.83 15.71 55.85 10.28 28.41 11.82
AEA95236 (tal)
 118.68 75.58 78.74 67.28 65.84 43.68 47.98 52.37 66.99 53.16 49.53 49.14 48.17 53.61 50.6 44.04 35.08 154.3 136.58 90.48 5.72 43.03 50.77 20.13 12.03 8.36 16.81 10.14 8.89 9.38 30.54 8.86 5.19 5.63 6.42 8.33 7.33 22.11 18.83 19.35 49.64 13.79 27.17 23.5
AEA95237 (OG1RF_12550)
 66.56 9.68 14.28 10.64 17.36 20.86 15.79 12.31 4.26 19.19 23.95 14.65 14.43 15.69 31.33 2.21 26.81 117.67 93.74 69.44 7.91 66.45 60.45 17.09 6.0 3.85 12.15 12.42 5.99 16.51 32.82 4.32 4.82 4.32 4.62 9.11 3.65 16.11 17.15 12.61 27.29 4.31 9.9 5.41
AEA95238 (srlE)
 38.49 8.43 10.15 7.79 25.2 19.43 10.34 14.81 16.28 11.29 20.06 12.83 9.41 11.78 16.31 3.79 14.37 54.86 64.98 45.64 3.94 33.64 34.56 12.47 6.13 3.46 9.42 6.27 3.61 5.85 24.24 3.69 3.77 3.27 3.26 3.73 3.43 13.15 13.29 11.58 19.73 3.37 5.57 3.94
AEA95239 (OG1RF_12552)
 32.73 6.45 4.06 3.94 13.87 13.51 12.51 10.38 11.98 9.2 21.26 13.55 9.8 13.93 18.22 4.9 20.58 115.82 96.79 36.2 3.24 15.56 16.86 8.27 2.05 1.71 7.29 3.71 2.3 4.55 20.59 2.09 2.22 3.62 3.47 2.35 3.01 7.14 5.55 7.97 21.26 2.54 3.98 3.67
AEA95262 (OG1RF_12575)
 369.31 558.72 554.2 489.23 852.14 499.26 263.84 267.11 236.42 227.62 264.39 232.63 264.57 264.4 290.29 332.67 312.92 236.42 196.17 352.76 336.6 402.53 313.92 321.44 259.73 321.94 340.57 315.7 349.18 353.63 672.5 564.54 424.7 205.5 226.21 252.58 217.8 501.38 452.94 414.48 399.46 270.79 260.97 239.29

Details

Raw expression values (TPM normalized), Green cells indicate low expression and red high. (Dark gray cells indicate missing values)