AAC75958 (ygfI, b2921)

Aliases : ygfI, b2921

Description : putative DNA-binding transcriptional regulator [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAC75958
Cluster	HCCA: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
AAL21469	STM2575	putative LysR family transcriptional regulator...	0.03	OrthoFinder
AGT25969	N559_4359	putative LysR-family transcriptional regulator...	0.04	OrthoFinder
AKI48437	L2625_00496	transcriptional regulator, LysR family [Ensembl]....	0.03	OrthoFinder
CPC44234	lysR, ERS093114_00453	LysR family regulatory protein [Ensembl]. LysR substrate...	0.02	OrthoFinder
CPC63513	cidR, ERS093114_00910	LysR family regulatory protein CidR [Ensembl]. LysR...	0.03	OrthoFinder
CRO72193	hcaR_3	Hca operon transcriptional activator [Ensembl]. LysR...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003986	acetyl-CoA hydrolase activity	IEP	Enrichment
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Enrichment
MF	GO:0004764	shikimate 3-dehydrogenase (NADP+) activity	IEP	Enrichment
BP	GO:0005975	carbohydrate metabolic process	IEP	Enrichment
BP	GO:0006083	acetate metabolic process	IEP	Enrichment
BP	GO:0007155	cell adhesion	IEP	Enrichment
MF	GO:0008410	CoA-transferase activity	IEP	Enrichment
MF	GO:0008775	acetate CoA-transferase activity	IEP	Enrichment
CC	GO:0009289	pilus	IEP	Enrichment
MF	GO:0016289	CoA hydrolase activity	IEP	Enrichment
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	IEP	Enrichment
MF	GO:0016790	thiolester hydrolase activity	IEP	Enrichment
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Enrichment
BP	GO:0019541	propionate metabolic process	IEP	Enrichment
BP	GO:0019679	propionate metabolic process, methylcitrate cycle	IEP	Enrichment
BP	GO:0022610	biological adhesion	IEP	Enrichment
CC	GO:0042995	cell projection	IEP	Enrichment
BP	GO:0046459	short-chain fatty acid metabolic process	IEP	Enrichment
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005119	LysR_subst-bd	89	281
IPR000847	Tscrpt_reg_HTH_LysR	8	65

External Links

UniProtKB	P52044

AAC75958 (ygfI, b2921)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation