AAC77324 (rsmC, b4371)

Aliases : rsmC, b4371

Description : 16S rRNA m(2)G1207 methyltransferase, SAM-dependent [Ensembl]. Methyltransferase small domain N-terminal [Interproscan].

Gene families : OG_02_0001087 (OrthoFinder) Phylogenetic Tree(s): OG0001087_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAC77324
Cluster	HCCA: Cluster_39

Target	Alias	Description	ECC score	Gene Family Method
AAL23371	STM4556, rsmC	16S ribosomal rRNA [Ensembl]. Methyltransferase small...	0.04	OrthoFinder
AGT26067	N559_4462	ribosomal RNA small subunit methyltransferase [Ensembl]....	0.05	OrthoFinder
CRP77624	rsmC	Ribosomal RNA small subunit methyltransferase C...	0.07	OrthoFinder
KNA51875	VCV51_030405	ribosomal RNA small subunit methyltransferase C...	0.06	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	IEA	Interproscan
MF	GO:0008170	N-methyltransferase activity	None	Extended
MF	GO:0008173	RNA methyltransferase activity	None	Extended
MF	GO:0008649	rRNA methyltransferase activity	None	Extended
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	None	Extended
MF	GO:0008990	rRNA (guanine-N2-)-methyltransferase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0016435	rRNA (guanine) methyltransferase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140102	catalytic activity, acting on a rRNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000062	fatty-acyl-CoA binding	IEP	Enrichment
BP	GO:0000154	rRNA modification	IEP	Enrichment
BP	GO:0000902	cell morphogenesis	IEP	Enrichment
BP	GO:0001510	RNA methylation	IEP	Enrichment
MF	GO:0003690	double-stranded DNA binding	IEP	Enrichment
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Enrichment
MF	GO:0003864	3-methyl-2-oxobutanoate hydroxymethyltransferase activity	IEP	Enrichment
MF	GO:0004620	phospholipase activity	IEP	Enrichment
BP	GO:0006298	mismatch repair	IEP	Enrichment
BP	GO:0006865	amino acid transport	IEP	Enrichment
MF	GO:0008094	ATPase, acting on DNA	IEP	Enrichment
MF	GO:0008855	exodeoxyribonuclease VII activity	IEP	Enrichment
CC	GO:0009295	nucleoid	IEP	Enrichment
BP	GO:0009653	anatomical structure morphogenesis	IEP	Enrichment
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	Enrichment
BP	GO:0015849	organic acid transport	IEP	Enrichment
BP	GO:0015939	pantothenate metabolic process	IEP	Enrichment
BP	GO:0015940	pantothenate biosynthetic process	IEP	Enrichment
MF	GO:0016298	lipase activity	IEP	Enrichment
MF	GO:0016859	cis-trans isomerase activity	IEP	Enrichment
BP	GO:0019216	regulation of lipid metabolic process	IEP	Enrichment
BP	GO:0019217	regulation of fatty acid metabolic process	IEP	Enrichment
MF	GO:0030983	mismatched DNA binding	IEP	Enrichment
BP	GO:0031167	rRNA methylation	IEP	Enrichment
MF	GO:0031406	carboxylic acid binding	IEP	Enrichment
BP	GO:0032502	developmental process	IEP	Enrichment
MF	GO:0033218	amide binding	IEP	Enrichment
MF	GO:0034618	arginine binding	IEP	Enrichment
MF	GO:0043177	organic acid binding	IEP	Enrichment
BP	GO:0051302	regulation of cell division	IEP	Enrichment
BP	GO:0062012	regulation of small molecule metabolic process	IEP	Enrichment
BP	GO:0070475	rRNA base methylation	IEP	Enrichment
MF	GO:0120227	acyl-CoA binding	IEP	Enrichment
MF	GO:1901567	fatty acid derivative binding	IEP	Enrichment
MF	GO:1901681	sulfur compound binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR007848	Small_mtfrase_dom	167	333
IPR013675	Mtase_sm_N	8	162

External Links

UniProtKB	P39406

AAC77324 (rsmC, b4371)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation