Aliases : CGSHi22421_05157
Description : putative HTH-type transcriptional regulator [Ensembl]. Helix-turn-helix [Interproscan].
Gene families : OG_02_0000087 (OrthoFinder) Phylogenetic Tree(s): OG0000087_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: EDJ90249 | |
Cluster | HCCA: Cluster_10 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
CRO79945 | sinR | HTH-type transcriptional regulator SinR [Ensembl]. Cupin... | 0.02 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003725 | double-stranded RNA binding | IEP | Enrichment |
MF | GO:0003905 | alkylbase DNA N-glycosylase activity | IEP | Enrichment |
MF | GO:0003909 | DNA ligase activity | IEP | Enrichment |
MF | GO:0003910 | DNA ligase (ATP) activity | IEP | Enrichment |
MF | GO:0004425 | indole-3-glycerol-phosphate synthase activity | IEP | Enrichment |
MF | GO:0004640 | phosphoribosylanthranilate isomerase activity | IEP | Enrichment |
MF | GO:0004764 | shikimate 3-dehydrogenase (NADP+) activity | IEP | Enrichment |
MF | GO:0004834 | tryptophan synthase activity | IEP | Enrichment |
BP | GO:0006259 | DNA metabolic process | IEP | Enrichment |
BP | GO:0006281 | DNA repair | IEP | Enrichment |
BP | GO:0006568 | tryptophan metabolic process | IEP | Enrichment |
BP | GO:0006576 | cellular biogenic amine metabolic process | IEP | Enrichment |
BP | GO:0006586 | indolalkylamine metabolic process | IEP | Enrichment |
BP | GO:0006950 | response to stress | IEP | Enrichment |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Enrichment |
MF | GO:0008725 | DNA-3-methyladenine glycosylase activity | IEP | Enrichment |
BP | GO:0009072 | aromatic amino acid family metabolic process | IEP | Enrichment |
BP | GO:0009292 | genetic transfer | IEP | Enrichment |
BP | GO:0009294 | DNA mediated transformation | IEP | Enrichment |
BP | GO:0009308 | amine metabolic process | IEP | Enrichment |
MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | Enrichment |
MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Enrichment |
MF | GO:0019104 | DNA N-glycosylase activity | IEP | Enrichment |
BP | GO:0033554 | cellular response to stress | IEP | Enrichment |
BP | GO:0042430 | indole-containing compound metabolic process | IEP | Enrichment |
MF | GO:0043733 | DNA-3-methylbase glycosylase activity | IEP | Enrichment |
BP | GO:0044106 | cellular amine metabolic process | IEP | Enrichment |
BP | GO:0044764 | multi-organism cellular process | IEP | Enrichment |
BP | GO:0050896 | response to stimulus | IEP | Enrichment |
BP | GO:0051704 | multi-organism process | IEP | Enrichment |
BP | GO:0051716 | cellular response to stimulus | IEP | Enrichment |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Enrichment |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001387 | Cro/C1-type_HTH | 41 | 89 |
No external refs found! |