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  5. EDJ90500

EDJ90500 (CGSHi22421_06367)


Aliases : CGSHi22421_06367

Description : putative type IV pilin secretion protein [Ensembl]. Type II secretion system (T2SS) [Interproscan].


Gene families : OG_02_0000229 (OrthoFinder) Phylogenetic Tree(s): OG0000229_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EDJ90500
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
AAC73217 hofC, b0106 assembly protein in type IV pilin biogenesis,... 0.05 OrthoFinder
AAC76352 gspF, b3327 general secretory pathway component, cryptic [Ensembl].... 0.03 OrthoFinder
AAL00665 spr1863, cglB Competence protein [Ensembl]. Type II secretion system... 0.05 OrthoFinder
AAL19106 STM0142, hofC putative component in type IV pilin biogenesis... 0.03 OrthoFinder
AEA94338 comG2, OG1RF_11651 competence protein [Ensembl]. Type II secretion system... 0.04 OrthoFinder
AHY40649 CJ8421_07360 general secretory pathway protein F [Ensembl]. Type II... 0.04 OrthoFinder
CRN95443 epsF_1 General secretion pathway protein F [Ensembl]. Type II... 0.03 OrthoFinder
CRP12851 epsF_4 General secretion pathway protein F [Ensembl]. Type II... 0.03 OrthoFinder
KNA53342 VCV51_031633 Type IV pilin assembly protein pilC [Ensembl]. Type II... 0.1 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP Enrichment
MF GO:0003872 6-phosphofructokinase activity IEP Enrichment
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008443 phosphofructokinase activity IEP Enrichment
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Enrichment
BP GO:0009292 genetic transfer IEP Enrichment
BP GO:0009294 DNA mediated transformation IEP Enrichment
BP GO:0016311 dephosphorylation IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0019104 DNA N-glycosylase activity IEP Enrichment
MF GO:0019200 carbohydrate kinase activity IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0043647 inositol phosphate metabolic process IEP Enrichment
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Enrichment
BP GO:0044764 multi-organism cellular process IEP Enrichment
BP GO:0046164 alcohol catabolic process IEP Enrichment
BP GO:0046174 polyol catabolic process IEP Enrichment
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Enrichment
BP GO:0046855 inositol phosphate dephosphorylation IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051704 multi-organism process IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
BP GO:0071545 inositol phosphate catabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901616 organic hydroxy compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR018076 T2SS_GspF_dom 63 185
IPR018076 T2SS_GspF_dom 266 396
No external refs found!