Aliases : CGSHi22421_02786
Description : transcription-repair coupling factor [Ensembl]. CarD-like/TRCF domain, UvrB interaction domain [Interproscan].
Gene families : OG_02_0000637 (OrthoFinder) Phylogenetic Tree(s): OG0000637_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: EDJ91013 | |
Cluster | HCCA: Cluster_9 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AAC74198 | mfd, b1114 | transcription-repair coupling factor [Ensembl].... | 0.04 | OrthoFinder | |
AAK98810 | spr0006, mfd | Transcription-repair coupling factor [Ensembl].... | 0.03 | OrthoFinder | |
AAL20145 | STM1216, mfd | transcription-repair coupling factor [Ensembl].... | 0.05 | OrthoFinder | |
AGT24835 | N559_3175 | transcription-repair coupling factor [Ensembl]. TRCF... | 0.04 | OrthoFinder | |
AKP14165 | mfd, WX61_00076 | Transcription-repair-coupling factor [Ensembl].... | 0.04 | OrthoFinder | |
KNA59432 | VCV51_031278 | transcription-repair coupling factor [Ensembl].... | 0.05 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001514 | selenocysteine incorporation | IEP | Enrichment |
BP | GO:0002100 | tRNA wobble adenosine to inosine editing | IEP | Enrichment |
MF | GO:0003824 | catalytic activity | IEP | Enrichment |
MF | GO:0003883 | CTP synthase activity | IEP | Enrichment |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Enrichment |
MF | GO:0003919 | FMN adenylyltransferase activity | IEP | Enrichment |
MF | GO:0004000 | adenosine deaminase activity | IEP | Enrichment |
MF | GO:0004347 | glucose-6-phosphate isomerase activity | IEP | Enrichment |
MF | GO:0004386 | helicase activity | IEP | Enrichment |
MF | GO:0004518 | nuclease activity | IEP | Enrichment |
MF | GO:0004527 | exonuclease activity | IEP | Enrichment |
MF | GO:0004529 | exodeoxyribonuclease activity | IEP | Enrichment |
MF | GO:0004536 | deoxyribonuclease activity | IEP | Enrichment |
MF | GO:0004743 | pyruvate kinase activity | IEP | Enrichment |
BP | GO:0006090 | pyruvate metabolic process | IEP | Enrichment |
BP | GO:0006091 | generation of precursor metabolites and energy | IEP | Enrichment |
BP | GO:0006096 | glycolytic process | IEP | Enrichment |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
BP | GO:0006165 | nucleoside diphosphate phosphorylation | IEP | Enrichment |
BP | GO:0006220 | pyrimidine nucleotide metabolic process | IEP | Enrichment |
BP | GO:0006221 | pyrimidine nucleotide biosynthetic process | IEP | Enrichment |
BP | GO:0006260 | DNA replication | IEP | Enrichment |
BP | GO:0006308 | DNA catabolic process | IEP | Enrichment |
BP | GO:0006382 | adenosine to inosine editing | IEP | Enrichment |
BP | GO:0006451 | translational readthrough | IEP | Enrichment |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | Enrichment |
BP | GO:0006757 | ATP generation from ADP | IEP | Enrichment |
BP | GO:0006793 | phosphorus metabolic process | IEP | Enrichment |
BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Enrichment |
BP | GO:0006996 | organelle organization | IEP | Enrichment |
MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Enrichment |
MF | GO:0008251 | tRNA-specific adenosine deaminase activity | IEP | Enrichment |
MF | GO:0008531 | riboflavin kinase activity | IEP | Enrichment |
MF | GO:0008716 | D-alanine-D-alanine ligase activity | IEP | Enrichment |
MF | GO:0008759 | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity | IEP | Enrichment |
MF | GO:0008852 | exodeoxyribonuclease I activity | IEP | Enrichment |
BP | GO:0009056 | catabolic process | IEP | Enrichment |
BP | GO:0009058 | biosynthetic process | IEP | Enrichment |
BP | GO:0009132 | nucleoside diphosphate metabolic process | IEP | Enrichment |
BP | GO:0009135 | purine nucleoside diphosphate metabolic process | IEP | Enrichment |
BP | GO:0009179 | purine ribonucleoside diphosphate metabolic process | IEP | Enrichment |
BP | GO:0009185 | ribonucleoside diphosphate metabolic process | IEP | Enrichment |
CC | GO:0009318 | exodeoxyribonuclease VII complex | IEP | Enrichment |
BP | GO:0016051 | carbohydrate biosynthetic process | IEP | Enrichment |
BP | GO:0016052 | carbohydrate catabolic process | IEP | Enrichment |
BP | GO:0016310 | phosphorylation | IEP | Enrichment |
BP | GO:0016553 | base conversion or substitution editing | IEP | Enrichment |
MF | GO:0016657 | oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor | IEP | Enrichment |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Enrichment |
MF | GO:0016787 | hydrolase activity | IEP | Enrichment |
MF | GO:0016796 | exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Enrichment |
MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Enrichment |
MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | Enrichment |
MF | GO:0016887 | ATPase | IEP | Enrichment |
MF | GO:0016895 | exodeoxyribonuclease activity, producing 5'-phosphomonoesters | IEP | Enrichment |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Enrichment |
MF | GO:0019213 | deacetylase activity | IEP | Enrichment |
BP | GO:0019439 | aromatic compound catabolic process | IEP | Enrichment |
BP | GO:0019637 | organophosphate metabolic process | IEP | Enrichment |
MF | GO:0030955 | potassium ion binding | IEP | Enrichment |
MF | GO:0031420 | alkali metal ion binding | IEP | Enrichment |
BP | GO:0032324 | molybdopterin cofactor biosynthetic process | IEP | Enrichment |
BP | GO:0032787 | monocarboxylic acid metabolic process | IEP | Enrichment |
MF | GO:0033739 | preQ1 synthase activity | IEP | Enrichment |
MF | GO:0034061 | DNA polymerase activity | IEP | Enrichment |
BP | GO:0034404 | nucleobase-containing small molecule biosynthetic process | IEP | Enrichment |
BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Enrichment |
BP | GO:0044237 | cellular metabolic process | IEP | Enrichment |
BP | GO:0044248 | cellular catabolic process | IEP | Enrichment |
BP | GO:0044249 | cellular biosynthetic process | IEP | Enrichment |
BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | Enrichment |
BP | GO:0044283 | small molecule biosynthetic process | IEP | Enrichment |
MF | GO:0045182 | translation regulator activity | IEP | Enrichment |
BP | GO:0046031 | ADP metabolic process | IEP | Enrichment |
BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
BP | GO:0046700 | heterocycle catabolic process | IEP | Enrichment |
BP | GO:0046939 | nucleotide phosphorylation | IEP | Enrichment |
BP | GO:0051276 | chromosome organization | IEP | Enrichment |
BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | Enrichment |
BP | GO:0071103 | DNA conformation change | IEP | Enrichment |
BP | GO:0071704 | organic substance metabolic process | IEP | Enrichment |
MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | Enrichment |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
CC | GO:0140535 | intracellular protein-containing complex | IEP | Enrichment |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
BP | GO:1901361 | organic cyclic compound catabolic process | IEP | Enrichment |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Enrichment |
BP | GO:1901575 | organic substance catabolic process | IEP | Enrichment |
BP | GO:1901576 | organic substance biosynthetic process | IEP | Enrichment |
CC | GO:1902494 | catalytic complex | IEP | Enrichment |
No external refs found! |