- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : CGSHi22421_10082
Description : tRNA pseudouridine synthase C [Ensembl].
Gene families : OG_02_0001953 (OrthoFinder) Phylogenetic Tree(s): OG0001953_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: EDJ91081 | |
| Cluster | HCCA: Cluster_8 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AAL21844 | STM2964, yqcB | putative synthase [Ensembl]. RNA pseudouridylate... | 0.06 | OrthoFinder | |
| AGT22870 | N559_1096 | tRNA pseudouridine synthase C [Ensembl]. | 0.05 | OrthoFinder | |
| KNA56280 | VCV51_030598 | RNA pseudouridylate synthase [Ensembl]. RNA... | 0.03 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0002098 | tRNA wobble uridine modification | IEP | Enrichment |
| BP | GO:0002143 | tRNA wobble position uridine thiolation | IEP | Enrichment |
| MF | GO:0003871 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity | IEP | Enrichment |
| MF | GO:0004055 | argininosuccinate synthase activity | IEP | Enrichment |
| MF | GO:0004089 | carbonate dehydratase activity | IEP | Enrichment |
| MF | GO:0004652 | polynucleotide adenylyltransferase activity | IEP | Enrichment |
| MF | GO:0004810 | tRNA adenylyltransferase activity | IEP | Enrichment |
| MF | GO:0005337 | nucleoside transmembrane transporter activity | IEP | Enrichment |
| BP | GO:0006400 | tRNA modification | IEP | Enrichment |
| BP | GO:0006526 | arginine biosynthetic process | IEP | Enrichment |
| MF | GO:0008097 | 5S rRNA binding | IEP | Enrichment |
| MF | GO:0008175 | tRNA methyltransferase activity | IEP | Enrichment |
| MF | GO:0008176 | tRNA (guanine-N7-)-methyltransferase activity | IEP | Enrichment |
| BP | GO:0009451 | RNA modification | IEP | Enrichment |
| BP | GO:0015858 | nucleoside transport | IEP | Enrichment |
| BP | GO:0015931 | nucleobase-containing compound transport | IEP | Enrichment |
| MF | GO:0015932 | nucleobase-containing compound transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Enrichment |
| BP | GO:0034227 | tRNA thio-modification | IEP | Enrichment |
| MF | GO:0034257 | nicotinamide riboside transmembrane transporter activity | IEP | Enrichment |
| BP | GO:0034258 | nicotinamide riboside transport | IEP | Enrichment |
| MF | GO:0042085 | 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity | IEP | Enrichment |
| BP | GO:0043094 | cellular metabolic compound salvage | IEP | Enrichment |
| BP | GO:0043174 | nucleoside salvage | IEP | Enrichment |
| BP | GO:0043412 | macromolecule modification | IEP | Enrichment |
| BP | GO:1901264 | carbohydrate derivative transport | IEP | Enrichment |
| MF | GO:1901505 | carbohydrate derivative transmembrane transporter activity | IEP | Enrichment |
| BP | GO:1990397 | queuosine salvage | IEP | Enrichment |
| MF | GO:1990817 | RNA adenylyltransferase activity | IEP | Enrichment |
No InterPro domains available for this sequence
| No external refs found! |