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EDJ91889 (CGSHi22421_09038)


Aliases : CGSHi22421_09038

Description : cytochrome c-type biogenesis protein CcmF [Ensembl]. Cytochrome C assembly protein, Cytochrome c-type biogenesis protein CcmF C-terminal [Interproscan].


Gene families : OG_02_0000633 (OrthoFinder) Phylogenetic Tree(s): OG0000633_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: EDJ91889
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AAC75256 ccmF, b2196 heme lyase, CcmF subunit [Ensembl]. Cytochrome C... 0.05 OrthoFinder
AAL21151 STM2249, ccmF cytochrome c-type biogenesis protein [Ensembl].... 0.05 OrthoFinder
AAL22673 STM3814, ccmF cytochrome c-type biogenesis protein [Ensembl].... 0.05 OrthoFinder
AAL23105 STM4281, nrfE formate-dependent nitrite reductase [Ensembl].... 0.01 OrthoFinder
AGT23927 N559_2215, CcmF cytochrome C biogenesis protein CcmF [Ensembl]. 0.06 OrthoFinder
AHY40220 CJ8421_05030 Putative cytochrome C-type biogenesis protein [Ensembl].... 0.04 OrthoFinder
CCP43266 ccsA, Rv0529 Possible cytochrome C-type biogenesis protein CcsA... 0.02 OrthoFinder
CRP40889 ccmF Cytochrome c-type biogenesis protein CcmF [Ensembl].... 0.03 OrthoFinder
KNA59634 VCV51_031376, CcmF cytochrome c-type biogenesis protein CcmF [Ensembl].... 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0017004 cytochrome complex assembly IEA Interproscan
MF GO:0020037 heme binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Enrichment
MF GO:0004356 glutamate-ammonia ligase activity IEP Enrichment
MF GO:0004359 glutaminase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
BP GO:0006826 iron ion transport IEP Enrichment
MF GO:0008144 drug binding IEP Enrichment
MF GO:0008658 penicillin binding IEP Enrichment
MF GO:0008716 D-alanine-D-alanine ligase activity IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
MF GO:0015232 heme transmembrane transporter activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
BP GO:0015886 heme transport IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
BP GO:0017003 protein-heme linkage IEP Enrichment
BP GO:0017006 protein-tetrapyrrole linkage IEP Enrichment
BP GO:0030258 lipid modification IEP Enrichment
BP GO:0030259 lipid glycosylation IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
BP GO:0031554 regulation of DNA-templated transcription, termination IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
MF GO:0033293 monocarboxylic acid binding IEP Enrichment
BP GO:0042816 vitamin B6 metabolic process IEP Enrichment
BP GO:0042819 vitamin B6 biosynthetic process IEP Enrichment
BP GO:0042822 pyridoxal phosphate metabolic process IEP Enrichment
BP GO:0042823 pyridoxal phosphate biosynthetic process IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
BP GO:0043242 negative regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Enrichment
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0046184 aldehyde biosynthetic process IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051129 negative regulation of cellular component organization IEP Enrichment
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051253 negative regulation of RNA metabolic process IEP Enrichment
BP GO:0051301 cell division IEP Enrichment
BP GO:0060567 negative regulation of DNA-templated transcription, termination IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
BP GO:1901678 iron coordination entity transport IEP Enrichment
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Enrichment
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR002541 Cyt_c_assembly 89 297
IPR032523 CcmF_C 316 638
No external refs found!