CBI65743 (rpoA, HPB8_186)


Aliases : rpoA, HPB8_186

Description : DNA-directed RNA polymerase subunit alpha [Ensembl]. Bacterial RNA polymerase, RNA polymerase Rpb3/RpoA insert domain, RNA polymerase Rpb3/Rpb11 dimerisation domain [Interproscan].


Gene families : OG_02_0000391 (OrthoFinder) Phylogenetic Tree(s): OG0000391_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CBI65743
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AAC76320 rpoA, b3295 RNA polymerase, alpha subunit [Ensembl]. Bacterial RNA... 0.16 OrthoFinder
AAK99019 spr0215, rpoA RNA polymerase alpha subunit [Ensembl]. Bacterial RNA... 0.16 OrthoFinder
AAL22278 STM3415, rpoA RNA polymerase, alpha subunit [Ensembl]. Bacterial RNA... 0.16 OrthoFinder
ADK86748 rpoA, MPNE_0220 DNA-directed RNA polymerase, alpha subunit [Ensembl].... 0.08 OrthoFinder
AEA92864 rpoA, OG1RF_10177 DNA-directed RNA polymerase subunit alpha [Ensembl].... 0.12 OrthoFinder
AGT22265 N559_0457 DNA-directed RNA polymerase subunit alpha [Ensembl]. RNA... 0.1 OrthoFinder
AHY40768 CJ8421_07980 DNA-directed RNA polymerase subunit alpha [Ensembl].... 0.13 OrthoFinder
AKI50541 rpoA, L2625_02751 DNA-directed RNA polymerase, alpha subunit [Ensembl].... 0.13 OrthoFinder
AKP15146 rpoA, WX61_01092 DNA-directed RNA polymerase subunit alpha [Ensembl].... 0.07 OrthoFinder
CCG27405 No alias DNA-directed RNA polymerase alpha subunit [Ensembl].... 0.09 OrthoFinder
CCL20591 rpoA, BN171_70031 DNA-directed RNA polymerase subunit alpha [Ensembl]. RNA... 0.11 OrthoFinder
CCP46279 rpoA, Rv3457c Probable DNA-directed RNA polymerase (alpha chain) RpoA... 0.1 OrthoFinder
CPD14384 rpoA, ERS093114_02148 DNA-directed RNA polymerase alpha subunit [Ensembl].... 0.18 OrthoFinder
CRO74499 rpoA DNA-directed RNA polymerase subunit alpha [Ensembl].... 0.18 OrthoFinder
EDJ91381 CGSHi22421_04738 DNA-directed RNA polymerase subunit alpha [Ensembl].... 0.14 OrthoFinder
KNA54997 VCV51_033180 DNA-directed RNA polymerase [Ensembl]. Bacterial RNA... 0.12 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0003989 acetyl-CoA carboxylase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006164 purine nucleotide biosynthetic process IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
MF GO:0016421 CoA carboxylase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0030258 lipid modification IEP Enrichment
BP GO:0030259 lipid glycosylation IEP Enrichment
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Enrichment
BP GO:0046034 ATP metabolic process IEP Enrichment
BP GO:0072522 purine-containing compound biosynthetic process IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR011262 DNA-dir_RNA_pol_insert 62 163
IPR011263 DNA-dir_RNA_pol_RpoA/D/Rpb3 30 231
IPR011260 RNAP_asu_C 251 312
UniProtKB D7FC36