CBI65909 (rimM, HPB8_352)


Aliases : rimM, HPB8_352

Description : 16S rRNA processing protein RimM [Ensembl]. PRC-barrel domain, RimM N-terminal domain [Interproscan].


Gene families : OG_02_0000750 (OrthoFinder) Phylogenetic Tree(s): OG0000750_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CBI65909
Cluster HCCA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
AAC75657 rimM, b2608 ribosome maturation factor [Ensembl]. PRC-barrel domain,... 0.05 OrthoFinder
AAL21564 STM2675, rimM 16S rRNA processing protein [Ensembl]. PRC-barrel... 0.06 OrthoFinder
CCL17409 rimM, BN171_1490003 16S rRNA processing protein RimM [Ensembl]. RimM... 0.05 OrthoFinder
CRO16836 rimM Ribosome maturation factor RimM [Ensembl]. PRC-barrel... 0.05 OrthoFinder
KNA51823 VCV51_033510, RimM 16S rRNA processing protein RimM [Ensembl]. PRC-barrel... 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity IEP Enrichment
MF GO:0004312 fatty acid synthase activity IEP Enrichment
MF GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity IEP Enrichment
MF GO:0004525 ribonuclease III activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Enrichment
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Enrichment
BP GO:0006231 dTMP biosynthetic process IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008172 S-methyltransferase activity IEP Enrichment
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Enrichment
BP GO:0009123 nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009129 pyrimidine nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009130 pyrimidine nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009157 deoxyribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009162 deoxyribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009176 pyrimidine deoxyribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009177 pyrimidine deoxyribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009219 pyrimidine deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009221 pyrimidine deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0009265 2'-deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0009394 2'-deoxyribonucleotide metabolic process IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0019692 deoxyribose phosphate metabolic process IEP Enrichment
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Enrichment
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEP Enrichment
BP GO:0046073 dTMP metabolic process IEP Enrichment
BP GO:0046385 deoxyribose phosphate biosynthetic process IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
CC GO:0098533 ATPase dependent transmembrane transport complex IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
CC GO:1902495 transmembrane transporter complex IEP Enrichment
CC GO:1904949 ATPase complex IEP Enrichment
CC GO:1990351 transporter complex IEP Enrichment
InterPro domains Description Start Stop
IPR002676 RimM_N 7 91
IPR027275 PRC-brl_dom 101 178
UniProtKB D7FCK2