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Aliases : virD4, HPB8_538
Description : type IV secretion system protein VirD4 [Ensembl]. Type IV secretory system Conjugative DNA transfer [Interproscan].
Gene families : OG_02_0003030 (OrthoFinder) Phylogenetic Tree(s): OG0003030_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: CBI66095 | |
| Cluster | HCCA: Cluster_5 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0009291 | unidirectional conjugation | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
| MF | GO:0003677 | DNA binding | IEP | Enrichment |
| MF | GO:0004590 | orotidine-5'-phosphate decarboxylase activity | IEP | Enrichment |
| CC | GO:0005886 | plasma membrane | IEP | Enrichment |
| BP | GO:0006081 | cellular aldehyde metabolic process | IEP | Enrichment |
| BP | GO:0006259 | DNA metabolic process | IEP | Enrichment |
| BP | GO:0006304 | DNA modification | IEP | Enrichment |
| BP | GO:0006629 | lipid metabolic process | IEP | Enrichment |
| BP | GO:0006644 | phospholipid metabolic process | IEP | Enrichment |
| BP | GO:0006793 | phosphorus metabolic process | IEP | Enrichment |
| BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0008610 | lipid biosynthetic process | IEP | Enrichment |
| BP | GO:0008654 | phospholipid biosynthetic process | IEP | Enrichment |
| BP | GO:0009240 | isopentenyl diphosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0009267 | cellular response to starvation | IEP | Enrichment |
| BP | GO:0009605 | response to external stimulus | IEP | Enrichment |
| BP | GO:0009991 | response to extracellular stimulus | IEP | Enrichment |
| BP | GO:0019288 | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | IEP | Enrichment |
| BP | GO:0019682 | glyceraldehyde-3-phosphate metabolic process | IEP | Enrichment |
| BP | GO:0031667 | response to nutrient levels | IEP | Enrichment |
| BP | GO:0031668 | cellular response to extracellular stimulus | IEP | Enrichment |
| BP | GO:0031669 | cellular response to nutrient levels | IEP | Enrichment |
| BP | GO:0042594 | response to starvation | IEP | Enrichment |
| BP | GO:0044255 | cellular lipid metabolic process | IEP | Enrichment |
| BP | GO:0046490 | isopentenyl diphosphate metabolic process | IEP | Enrichment |
| BP | GO:0050992 | dimethylallyl diphosphate biosynthetic process | IEP | Enrichment |
| BP | GO:0050993 | dimethylallyl diphosphate metabolic process | IEP | Enrichment |
| BP | GO:0071496 | cellular response to external stimulus | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR003688 | TraG/VirD4 | 95 | 612 |
| UniProtKB | D7FD38 |