AGT23014 (N559_1250)

Aliases : N559_1250

Description : outer membrane protein; export and assembly of type 1 fimbriae [Ensembl]. PapC C-terminal domain, PapC N-terminal domain [InterProScan].

Gene families : OG_02_0000166 (OrthoFinder) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AGT23014
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
AAC77273	fimD, b4317	fimbrial usher outer membrane porin protein; FimCD...	0.04	OrthoFinder
AGT22732	N559_0945, FimD	outer membrane usher protein FimD [Ensembl]. PapC...	0.04	OrthoFinder
AGT23011	N559_1247	fimbrial usher protein [Ensembl]. PapC N-terminal...	0.07	OrthoFinder
AGT24313	N559_2637	fimbrial usher protein [Ensembl]. PapC N-terminal...	0.04	OrthoFinder
AGT26409	N559_4823	putative outer membrane usher protein [Ensembl]. PapC...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009297	pilus assembly	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015288	porin activity	None	Extended
MF	GO:0015473	fimbrial usher porin activity	IEA	Interproscan
CC	GO:0016020	membrane	IEA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022829	wide pore channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0030030	cell projection organization	None	Extended
BP	GO:0030031	cell projection assembly	None	Extended
BP	GO:0043711	pilus organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0006066	alcohol metabolic process	IEP	Enrichment
BP	GO:0006071	glycerol metabolic process	IEP	Enrichment
BP	GO:0006810	transport	IEP	Enrichment
BP	GO:0007155	cell adhesion	IEP	Enrichment
CC	GO:0009279	cell outer membrane	IEP	Enrichment
CC	GO:0009289	pilus	IEP	Enrichment
BP	GO:0019400	alditol metabolic process	IEP	Enrichment
BP	GO:0019751	polyol metabolic process	IEP	Enrichment
BP	GO:0022610	biological adhesion	IEP	Enrichment
CC	GO:0030288	outer membrane-bounded periplasmic space	IEP	Enrichment
BP	GO:0034219	carbohydrate transmembrane transport	IEP	Enrichment
CC	GO:0042995	cell projection	IEP	Enrichment
BP	GO:0045229	external encapsulating structure organization	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051234	establishment of localization	IEP	Enrichment
BP	GO:0055085	transmembrane transport	IEP	Enrichment
BP	GO:0071554	cell wall organization or biogenesis	IEP	Enrichment
BP	GO:0071555	cell wall organization	IEP	Enrichment
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR025949	PapC-like_C	758	818
IPR025885	PapC_N	36	162
IPR000015	Fimb_usher	177	749

External Links

No external refs found!

AGT23014 (N559_1250)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation