AGT23273 (N559_1520, CynR)

Aliases : N559_1520, CynR

Description : DNA-binding transcriptional regulator CynR [Ensembl]. LysR substrate binding domain, lysR family [InterProScan].

Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AGT23273
Cluster	HCCA: Cluster_21

Target	Alias	Description	ECC score	Gene Family Method
AAC74357	cysB, b1275	N-acetylserine-responsive cysteine regulon...	0.05	OrthoFinder
AAC75218	yeiE, b2157	putative DNA-binding transcriptional regulator...	0.03	OrthoFinder
AAC75458	xapR, b2405	transcriptional activator of xapAB [Ensembl]. LysR...	0.03	OrthoFinder
AAC75590	hcaR, b2537	hca operon transcriptional regulator [Ensembl]. LysR...	0.04	OrthoFinder
AAC76609	yiaU, b3585	putative DNA-binding transcriptional regulator...	0.06	OrthoFinder
AAL20406	STM1487, ynfL	putative LysR family transcriptional regulator...	0.02	OrthoFinder
AAL21105	STM2201, yeiE	putative LysR family transcriptional regulator...	0.03	OrthoFinder
AAL21314	STM2420, xapR	regulator for XapA [Ensembl]. LysR substrate binding...	0.04	OrthoFinder
AAL21995	STM3121	putative LysR family transcriptional regulator...	0.01	OrthoFinder
AAL22693	STM3834	putative LysR family transcriptional regulator...	0.04	OrthoFinder
AGT24425	N559_2752	LysR family transcriptional regulator [Ensembl]. LysR...	0.05	OrthoFinder
AKI49729	gltC, L2625_01870	transcriptional activator of the glutamate synthase...	0.02	OrthoFinder
CCL17254	BN171_1410016	Transcriptional regulator, LysR family [Ensembl]. LysR...	0.04	OrthoFinder
CCL18208	BN171_2160004	Transcriptional regulator, LysR family [Ensembl]. LysR...	0.03	OrthoFinder
CRO37348	benM_3	Ben and cat operon transcriptional regulator [Ensembl]....	0.03	OrthoFinder
CRO43121	cmpR_1	HTH-type transcriptional activator CmpR [Ensembl]. LysR...	0.02	OrthoFinder
CRO80200	cynR_3	Cyn operon transcriptional activator [Ensembl]. LysR...	0.02	OrthoFinder
CRO86371	oxyR_2	Morphology and auto-aggregation control protein...	0.01	OrthoFinder
CRP00540	cysL_3	CysJI operon transcriptional activator [Ensembl]. LysR...	0.02	OrthoFinder
CRP01952	cmpR_2	HTH-type transcriptional activator CmpR [Ensembl]. LysR...	0.01	OrthoFinder
CRP03013	gltC_5	HTH-type transcriptional regulator GltC [Ensembl]. LysR...	0.04	OrthoFinder
CRP45508	benM_8	Ben and cat operon transcriptional regulator [Ensembl]....	0.01	OrthoFinder
CRP53545	cynR_8	Cyn operon transcriptional activator [Ensembl]. LysR...	0.02	OrthoFinder
KNA54936	VCV51_031768	LysR substrate binding domain-containing protein...	0.04	OrthoFinder
KNA56848	VCV51_032860	LysR substrate binding domain-containing protein...	0.03	OrthoFinder
KNA59752	VCV51_032447	lysR family Bacterial regulatory helix-turn-helix...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0004797	thymidine kinase activity	IEP	Enrichment
MF	GO:0015105	arsenite transmembrane transporter activity	IEP	Enrichment
BP	GO:0015700	arsenite transport	IEP	Enrichment
MF	GO:0016407	acetyltransferase activity	IEP	Enrichment
MF	GO:0019136	deoxynucleoside kinase activity	IEP	Enrichment
MF	GO:0019206	nucleoside kinase activity	IEP	Enrichment
MF	GO:0031072	heat shock protein binding	IEP	Enrichment
MF	GO:0034618	arginine binding	IEP	Enrichment
MF	GO:0042802	identical protein binding	IEP	Enrichment
MF	GO:0042803	protein homodimerization activity	IEP	Enrichment
BP	GO:0043933	protein-containing complex subunit organization	IEP	Enrichment
MF	GO:0051087	chaperone binding	IEP	Enrichment
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Enrichment
MF	GO:0060590	ATPase regulator activity	IEP	Enrichment
BP	GO:0065003	protein-containing complex assembly	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000847	Tscrpt_reg_HTH_LysR	3	62
IPR005119	LysR_subst-bd	89	289

External Links

No external refs found!

AGT23273 (N559_1520, CynR)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation